Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NPQ:C39:C32
Extra
PDB:
ATOM 1 O3' A A 38 -2.613 -9.709 36.850 1.00 42.85 O
ATOM 2 P A A 39 -2.783 -8.121 36.932 1.00 48.59 P
ATOM 3 OP1 A A 39 -4.104 -7.775 36.362 1.00 53.82 O
ATOM 4 OP2 A A 39 -1.556 -7.507 36.379 1.00 52.79 O
ATOM 5 O5' A A 39 -2.810 -7.840 38.507 1.00 45.91 O
ATOM 6 C5' A A 39 -3.834 -8.400 39.320 1.00 37.21 C
ATOM 7 C4' A A 39 -3.713 -7.899 40.747 1.00 36.36 C
ATOM 8 O4' A A 39 -2.564 -8.508 41.388 1.00 36.81 O
ATOM 9 C3' A A 39 -3.484 -6.400 40.867 1.00 37.90 C
ATOM 10 O3' A A 39 -4.730 -5.717 40.887 1.00 38.36 O
ATOM 11 C2' A A 39 -2.764 -6.296 42.207 1.00 32.06 C
ATOM 12 O2' A A 39 -3.656 -6.332 43.304 1.00 32.79 O
ATOM 13 C1' A A 39 -1.896 -7.551 42.189 1.00 34.88 C
ATOM 14 N9 A A 39 -0.565 -7.331 41.631 1.00 32.47 N
ATOM 15 C8 A A 39 -0.109 -7.731 40.406 1.00 32.54 C
ATOM 16 N7 A A 39 1.137 -7.394 40.171 1.00 35.79 N
ATOM 17 C5 A A 39 1.525 -6.726 41.321 1.00 33.31 C
ATOM 18 C6 A A 39 2.736 -6.117 41.704 1.00 30.94 C
ATOM 19 N6 A A 39 3.822 -6.087 40.925 1.00 31.91 N
ATOM 20 N1 A A 39 2.787 -5.539 42.921 1.00 27.74 N
ATOM 21 C2 A A 39 1.698 -5.570 43.698 1.00 23.14 C
ATOM 22 N3 A A 39 0.507 -6.111 43.448 1.00 29.52 N
ATOM 23 C4 A A 39 0.487 -6.678 42.232 1.00 33.04 C
ATOM 24 P A A 40 -4.912 -4.382 40.027 1.00 41.99 P
ATOM 25 OP1 A A 40 -6.355 -4.058 39.991 1.00 50.17 O
ATOM 26 OP2 A A 40 -4.156 -4.543 38.765 1.00 40.11 O
ATOM 27 O5' A A 40 -4.156 -3.287 40.914 1.00 40.02 O
TER
ATOM 1 O3' C B 31 9.430 0.519 46.339 1.00 37.44 O
ATOM 2 P U B 32 9.668 -0.863 47.109 1.00 32.53 P
ATOM 3 OP1 U B 32 9.474 -0.617 48.555 1.00 51.71 O
ATOM 4 OP2 U B 32 10.937 -1.449 46.622 1.00 30.82 O
ATOM 5 O5' U B 32 8.466 -1.772 46.577 1.00 31.51 O
ATOM 6 C5' U B 32 7.125 -1.335 46.743 1.00 31.18 C
ATOM 7 C4' U B 32 6.188 -2.182 45.904 1.00 32.38 C
ATOM 8 O4' U B 32 6.419 -1.924 44.496 1.00 32.81 O
ATOM 9 C3' U B 32 6.392 -3.682 46.042 1.00 27.87 C
ATOM 10 O3' U B 32 5.719 -4.172 47.193 1.00 27.78 O
ATOM 11 C2' U B 32 5.746 -4.175 44.754 1.00 29.79 C
ATOM 12 O2' U B 32 4.335 -4.182 44.832 1.00 33.95 O
ATOM 13 C1' U B 32 6.213 -3.116 43.759 1.00 36.24 C
ATOM 14 N1 U B 32 7.479 -3.479 43.056 1.00 38.96 N
ATOM 15 C2 U B 32 7.423 -4.319 41.963 1.00 38.20 C
ATOM 16 O2 U B 32 6.384 -4.787 41.533 1.00 38.48 O
ATOM 17 N3 U B 32 8.637 -4.595 41.384 1.00 39.41 N
ATOM 18 C4 U B 32 9.875 -4.125 41.781 1.00 40.61 C
ATOM 19 O4 U B 32 10.880 -4.460 41.162 1.00 47.48 O
ATOM 20 C5 U B 32 9.852 -3.256 42.928 1.00 39.05 C
ATOM 21 C6 U B 32 8.680 -2.973 43.508 1.00 35.26 C
ATOM 22 P C B 33 6.362 -5.374 48.030 1.00 38.35 P
ATOM 23 OP1 C B 33 5.639 -5.468 49.318 1.00 35.74 O
ATOM 24 OP2 C B 33 7.833 -5.207 48.018 1.00 34.70 O
ATOM 25 O5' C B 33 6.005 -6.651 47.138 1.00 30.00 O
TER
ATOM 2 P A A 39 -2.783 -8.121 36.932 1.00 48.59 P
ATOM 3 OP1 A A 39 -4.104 -7.775 36.362 1.00 53.82 O
ATOM 4 OP2 A A 39 -1.556 -7.507 36.379 1.00 52.79 O
ATOM 5 O5' A A 39 -2.810 -7.840 38.507 1.00 45.91 O
ATOM 6 C5' A A 39 -3.834 -8.400 39.320 1.00 37.21 C
ATOM 7 C4' A A 39 -3.713 -7.899 40.747 1.00 36.36 C
ATOM 8 O4' A A 39 -2.564 -8.508 41.388 1.00 36.81 O
ATOM 9 C3' A A 39 -3.484 -6.400 40.867 1.00 37.90 C
ATOM 10 O3' A A 39 -4.730 -5.717 40.887 1.00 38.36 O
ATOM 11 C2' A A 39 -2.764 -6.296 42.207 1.00 32.06 C
ATOM 12 O2' A A 39 -3.656 -6.332 43.304 1.00 32.79 O
ATOM 13 C1' A A 39 -1.896 -7.551 42.189 1.00 34.88 C
ATOM 14 N9 A A 39 -0.565 -7.331 41.631 1.00 32.47 N
ATOM 15 C8 A A 39 -0.109 -7.731 40.406 1.00 32.54 C
ATOM 16 N7 A A 39 1.137 -7.394 40.171 1.00 35.79 N
ATOM 17 C5 A A 39 1.525 -6.726 41.321 1.00 33.31 C
ATOM 18 C6 A A 39 2.736 -6.117 41.704 1.00 30.94 C
ATOM 19 N6 A A 39 3.822 -6.087 40.925 1.00 31.91 N
ATOM 20 N1 A A 39 2.787 -5.539 42.921 1.00 27.74 N
ATOM 21 C2 A A 39 1.698 -5.570 43.698 1.00 23.14 C
ATOM 22 N3 A A 39 0.507 -6.111 43.448 1.00 29.52 N
ATOM 23 C4 A A 39 0.487 -6.678 42.232 1.00 33.04 C
ATOM 24 P A A 40 -4.912 -4.382 40.027 1.00 41.99 P
ATOM 25 OP1 A A 40 -6.355 -4.058 39.991 1.00 50.17 O
ATOM 26 OP2 A A 40 -4.156 -4.543 38.765 1.00 40.11 O
ATOM 27 O5' A A 40 -4.156 -3.287 40.914 1.00 40.02 O
TER
ATOM 1 O3' C B 31 9.430 0.519 46.339 1.00 37.44 O
ATOM 2 P U B 32 9.668 -0.863 47.109 1.00 32.53 P
ATOM 3 OP1 U B 32 9.474 -0.617 48.555 1.00 51.71 O
ATOM 4 OP2 U B 32 10.937 -1.449 46.622 1.00 30.82 O
ATOM 5 O5' U B 32 8.466 -1.772 46.577 1.00 31.51 O
ATOM 6 C5' U B 32 7.125 -1.335 46.743 1.00 31.18 C
ATOM 7 C4' U B 32 6.188 -2.182 45.904 1.00 32.38 C
ATOM 8 O4' U B 32 6.419 -1.924 44.496 1.00 32.81 O
ATOM 9 C3' U B 32 6.392 -3.682 46.042 1.00 27.87 C
ATOM 10 O3' U B 32 5.719 -4.172 47.193 1.00 27.78 O
ATOM 11 C2' U B 32 5.746 -4.175 44.754 1.00 29.79 C
ATOM 12 O2' U B 32 4.335 -4.182 44.832 1.00 33.95 O
ATOM 13 C1' U B 32 6.213 -3.116 43.759 1.00 36.24 C
ATOM 14 N1 U B 32 7.479 -3.479 43.056 1.00 38.96 N
ATOM 15 C2 U B 32 7.423 -4.319 41.963 1.00 38.20 C
ATOM 16 O2 U B 32 6.384 -4.787 41.533 1.00 38.48 O
ATOM 17 N3 U B 32 8.637 -4.595 41.384 1.00 39.41 N
ATOM 18 C4 U B 32 9.875 -4.125 41.781 1.00 40.61 C
ATOM 19 O4 U B 32 10.880 -4.460 41.162 1.00 47.48 O
ATOM 20 C5 U B 32 9.852 -3.256 42.928 1.00 39.05 C
ATOM 21 C6 U B 32 8.680 -2.973 43.508 1.00 35.26 C
ATOM 22 P C B 33 6.362 -5.374 48.030 1.00 38.35 P
ATOM 23 OP1 C B 33 5.639 -5.468 49.318 1.00 35.74 O
ATOM 24 OP2 C B 33 7.833 -5.207 48.018 1.00 34.70 O
ATOM 25 O5' C B 33 6.005 -6.651 47.138 1.00 30.00 O
TER
Atoms:
OP1: (-4.104,-7.775,36.362)
OP2: (-1.556,-7.507,36.379)
C3': (-3.484,-6.400,40.867)
C1': (-1.896,-7.551,42.189)
C5': (-3.834,-8.400,39.320)
O4': (-2.564,-8.508,41.388)
C8: (-0.109,-7.731,40.406)
O2': (-3.656,-6.332,43.304)
C6: (2.736,-6.117,41.704)
C5: (1.525,-6.726,41.321)
C4: (0.487,-6.678,42.232)
P: (-2.783,-8.121,36.932)
C4': (-3.713,-7.899,40.747)
C2': (-2.764,-6.296,42.207)
C2: (1.698,-5.570,43.698)
N1: (2.787,-5.539,42.921)
N3: (0.507,-6.111,43.448)
N6: (3.822,-6.087,40.925)
N7: (1.137,-7.394,40.171)
N9: (-0.565,-7.331,41.631)
O5': (-2.810,-7.840,38.507)
O3': (-4.730,-5.717,40.887)
OP2: (-1.556,-7.507,36.379)
C3': (-3.484,-6.400,40.867)
C1': (-1.896,-7.551,42.189)
C5': (-3.834,-8.400,39.320)
O4': (-2.564,-8.508,41.388)
C8: (-0.109,-7.731,40.406)
O2': (-3.656,-6.332,43.304)
C6: (2.736,-6.117,41.704)
C5: (1.525,-6.726,41.321)
C4: (0.487,-6.678,42.232)
P: (-2.783,-8.121,36.932)
C4': (-3.713,-7.899,40.747)
C2': (-2.764,-6.296,42.207)
C2: (1.698,-5.570,43.698)
N1: (2.787,-5.539,42.921)
N3: (0.507,-6.111,43.448)
N6: (3.822,-6.087,40.925)
N7: (1.137,-7.394,40.171)
N9: (-0.565,-7.331,41.631)
O5': (-2.810,-7.840,38.507)
O3': (-4.730,-5.717,40.887)
C4: (9.875,-4.125,41.781)
N3: (8.637,-4.595,41.384)
OP1: (9.474,-0.617,48.555)
OP2: (10.937,-1.449,46.622)
C2: (7.423,-4.319,41.963)
C1': (6.213,-3.116,43.759)
C3': (6.392,-3.682,46.042)
O5': (8.466,-1.772,46.577)
O4': (6.419,-1.924,44.496)
C5': (7.125,-1.335,46.743)
P: (9.668,-0.863,47.109)
C4': (6.188,-2.182,45.904)
C2': (5.746,-4.175,44.754)
O2': (4.335,-4.182,44.832)
N1: (7.479,-3.479,43.056)
O4: (10.880,-4.460,41.162)
O2: (6.384,-4.787,41.533)
C6: (8.680,-2.973,43.508)
C5: (9.852,-3.256,42.928)
O3': (5.719,-4.172,47.193)
N3: (8.637,-4.595,41.384)
OP1: (9.474,-0.617,48.555)
OP2: (10.937,-1.449,46.622)
C2: (7.423,-4.319,41.963)
C1': (6.213,-3.116,43.759)
C3': (6.392,-3.682,46.042)
O5': (8.466,-1.772,46.577)
O4': (6.419,-1.924,44.496)
C5': (7.125,-1.335,46.743)
P: (9.668,-0.863,47.109)
C4': (6.188,-2.182,45.904)
C2': (5.746,-4.175,44.754)
O2': (4.335,-4.182,44.832)
N1: (7.479,-3.479,43.056)
O4: (10.880,-4.460,41.162)
O2: (6.384,-4.787,41.533)
C6: (8.680,-2.973,43.508)
C5: (9.852,-3.256,42.928)
O3': (5.719,-4.172,47.193)
Image (generated by PyMOL):