Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A223:A224
Extra
PDB:
ATOM 1 O3' A A 222 53.662 110.561 17.198 1.00 55.49 O
ATOM 2 P C A 223 53.846 110.433 15.610 1.00 57.83 P
ATOM 3 OP1 C A 223 53.707 111.778 14.998 1.00 55.82 O
ATOM 4 OP2 C A 223 52.953 109.332 15.177 1.00 58.39 O
ATOM 5 O5' C A 223 55.353 109.932 15.464 1.00 56.73 O
ATOM 6 C5' C A 223 55.752 109.095 14.370 1.00 54.30 C
ATOM 7 C4' C A 223 57.107 108.511 14.641 1.00 52.84 C
ATOM 8 O4' C A 223 57.016 107.547 15.720 1.00 52.24 O
ATOM 9 C3' C A 223 57.682 107.724 13.483 1.00 53.35 C
ATOM 10 O3' C A 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 11 C2' C A 223 58.656 106.789 14.179 1.00 52.26 C
ATOM 12 O2' C A 223 59.869 107.429 14.512 1.00 51.68 O
ATOM 13 C1' C A 223 57.884 106.451 15.458 1.00 52.40 C
ATOM 14 N1 C A 223 57.085 105.193 15.388 1.00 52.67 N
ATOM 15 C2 C A 223 57.761 103.956 15.406 1.00 52.89 C
ATOM 16 O2 C A 223 58.993 103.936 15.511 1.00 52.28 O
ATOM 17 N3 C A 223 57.051 102.808 15.314 1.00 53.72 N
ATOM 18 C4 C A 223 55.722 102.847 15.224 1.00 53.76 C
ATOM 19 N4 C A 223 55.080 101.677 15.116 1.00 53.50 N
ATOM 20 C5 C A 223 55.000 104.080 15.231 1.00 52.25 C
ATOM 21 C6 C A 223 55.714 105.218 15.306 1.00 52.92 C
ATOM 22 P A A 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 23 OP1 A A 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 24 OP2 A A 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 25 O5' A A 224 59.847 107.193 11.114 1.00 51.08 O
TER
ATOM 1 O3' C B 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 2 P A B 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 3 OP1 A B 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 4 OP2 A B 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 5 O5' A B 224 59.847 107.193 11.114 1.00 51.08 O
ATOM 6 C5' A B 224 60.355 106.454 9.991 1.00 50.44 C
ATOM 7 C4' A B 224 61.814 106.243 10.200 1.00 50.02 C
ATOM 8 O4' A B 224 62.452 107.545 10.103 1.00 50.04 O
ATOM 9 C3' A B 224 62.080 105.750 11.619 1.00 50.97 C
ATOM 10 O3' A B 224 63.321 105.056 11.694 1.00 53.36 O
ATOM 11 C2' A B 224 62.207 107.066 12.382 1.00 51.03 C
ATOM 12 O2' A B 224 62.921 106.965 13.594 1.00 51.32 O
ATOM 13 C1' A B 224 62.971 107.909 11.367 1.00 50.61 C
ATOM 14 N9 A B 224 62.818 109.350 11.540 1.00 49.90 N
ATOM 15 C8 A B 224 61.694 110.122 11.357 1.00 48.99 C
ATOM 16 N7 A B 224 61.898 111.406 11.539 1.00 48.18 N
ATOM 17 C5 A B 224 63.241 111.483 11.883 1.00 48.40 C
ATOM 18 C6 A B 224 64.070 112.569 12.199 1.00 48.10 C
ATOM 19 N6 A B 224 63.646 113.833 12.222 1.00 47.87 N
ATOM 20 N1 A B 224 65.367 112.308 12.495 1.00 48.34 N
ATOM 21 C2 A B 224 65.790 111.035 12.474 1.00 48.96 C
ATOM 22 N3 A B 224 65.105 109.922 12.193 1.00 49.33 N
ATOM 23 C4 A B 224 63.819 110.221 11.901 1.00 49.56 C
ATOM 24 P G B 225 63.546 103.709 10.852 1.00 55.04 P
ATOM 25 OP1 G B 225 62.293 103.494 10.073 1.00 54.87 O
ATOM 26 OP2 G B 225 64.037 102.641 11.759 1.00 56.30 O
ATOM 27 O5' G B 225 64.733 104.101 9.860 1.00 55.80 O
TER
ATOM 2 P C A 223 53.846 110.433 15.610 1.00 57.83 P
ATOM 3 OP1 C A 223 53.707 111.778 14.998 1.00 55.82 O
ATOM 4 OP2 C A 223 52.953 109.332 15.177 1.00 58.39 O
ATOM 5 O5' C A 223 55.353 109.932 15.464 1.00 56.73 O
ATOM 6 C5' C A 223 55.752 109.095 14.370 1.00 54.30 C
ATOM 7 C4' C A 223 57.107 108.511 14.641 1.00 52.84 C
ATOM 8 O4' C A 223 57.016 107.547 15.720 1.00 52.24 O
ATOM 9 C3' C A 223 57.682 107.724 13.483 1.00 53.35 C
ATOM 10 O3' C A 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 11 C2' C A 223 58.656 106.789 14.179 1.00 52.26 C
ATOM 12 O2' C A 223 59.869 107.429 14.512 1.00 51.68 O
ATOM 13 C1' C A 223 57.884 106.451 15.458 1.00 52.40 C
ATOM 14 N1 C A 223 57.085 105.193 15.388 1.00 52.67 N
ATOM 15 C2 C A 223 57.761 103.956 15.406 1.00 52.89 C
ATOM 16 O2 C A 223 58.993 103.936 15.511 1.00 52.28 O
ATOM 17 N3 C A 223 57.051 102.808 15.314 1.00 53.72 N
ATOM 18 C4 C A 223 55.722 102.847 15.224 1.00 53.76 C
ATOM 19 N4 C A 223 55.080 101.677 15.116 1.00 53.50 N
ATOM 20 C5 C A 223 55.000 104.080 15.231 1.00 52.25 C
ATOM 21 C6 C A 223 55.714 105.218 15.306 1.00 52.92 C
ATOM 22 P A A 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 23 OP1 A A 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 24 OP2 A A 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 25 O5' A A 224 59.847 107.193 11.114 1.00 51.08 O
TER
ATOM 1 O3' C B 223 58.292 108.588 12.522 1.00 54.15 O
ATOM 2 P A B 224 58.533 108.070 11.013 1.00 52.91 P
ATOM 3 OP1 A B 224 58.848 109.260 10.189 1.00 53.38 O
ATOM 4 OP2 A B 224 57.443 107.146 10.600 1.00 53.16 O
ATOM 5 O5' A B 224 59.847 107.193 11.114 1.00 51.08 O
ATOM 6 C5' A B 224 60.355 106.454 9.991 1.00 50.44 C
ATOM 7 C4' A B 224 61.814 106.243 10.200 1.00 50.02 C
ATOM 8 O4' A B 224 62.452 107.545 10.103 1.00 50.04 O
ATOM 9 C3' A B 224 62.080 105.750 11.619 1.00 50.97 C
ATOM 10 O3' A B 224 63.321 105.056 11.694 1.00 53.36 O
ATOM 11 C2' A B 224 62.207 107.066 12.382 1.00 51.03 C
ATOM 12 O2' A B 224 62.921 106.965 13.594 1.00 51.32 O
ATOM 13 C1' A B 224 62.971 107.909 11.367 1.00 50.61 C
ATOM 14 N9 A B 224 62.818 109.350 11.540 1.00 49.90 N
ATOM 15 C8 A B 224 61.694 110.122 11.357 1.00 48.99 C
ATOM 16 N7 A B 224 61.898 111.406 11.539 1.00 48.18 N
ATOM 17 C5 A B 224 63.241 111.483 11.883 1.00 48.40 C
ATOM 18 C6 A B 224 64.070 112.569 12.199 1.00 48.10 C
ATOM 19 N6 A B 224 63.646 113.833 12.222 1.00 47.87 N
ATOM 20 N1 A B 224 65.367 112.308 12.495 1.00 48.34 N
ATOM 21 C2 A B 224 65.790 111.035 12.474 1.00 48.96 C
ATOM 22 N3 A B 224 65.105 109.922 12.193 1.00 49.33 N
ATOM 23 C4 A B 224 63.819 110.221 11.901 1.00 49.56 C
ATOM 24 P G B 225 63.546 103.709 10.852 1.00 55.04 P
ATOM 25 OP1 G B 225 62.293 103.494 10.073 1.00 54.87 O
ATOM 26 OP2 G B 225 64.037 102.641 11.759 1.00 56.30 O
ATOM 27 O5' G B 225 64.733 104.101 9.860 1.00 55.80 O
TER
Atoms:
C2: (57.761,103.956,15.406)
OP1: (53.707,111.778,14.998)
OP2: (52.953,109.332,15.177)
C4: (55.722,102.847,15.224)
O5': (55.353,109.932,15.464)
C3': (57.682,107.724,13.483)
C1': (57.884,106.451,15.458)
O4': (57.016,107.547,15.720)
C5': (55.752,109.095,14.370)
P: (53.846,110.433,15.610)
O2: (58.993,103.936,15.511)
C4': (57.107,108.511,14.641)
C2': (58.656,106.789,14.179)
O2': (59.869,107.429,14.512)
N1: (57.085,105.193,15.388)
N3: (57.051,102.808,15.314)
N4: (55.080,101.677,15.116)
C6: (55.714,105.218,15.306)
C5: (55.000,104.080,15.231)
O3': (58.292,108.588,12.522)
OP1: (53.707,111.778,14.998)
OP2: (52.953,109.332,15.177)
C4: (55.722,102.847,15.224)
O5': (55.353,109.932,15.464)
C3': (57.682,107.724,13.483)
C1': (57.884,106.451,15.458)
O4': (57.016,107.547,15.720)
C5': (55.752,109.095,14.370)
P: (53.846,110.433,15.610)
O2: (58.993,103.936,15.511)
C4': (57.107,108.511,14.641)
C2': (58.656,106.789,14.179)
O2': (59.869,107.429,14.512)
N1: (57.085,105.193,15.388)
N3: (57.051,102.808,15.314)
N4: (55.080,101.677,15.116)
C6: (55.714,105.218,15.306)
C5: (55.000,104.080,15.231)
O3': (58.292,108.588,12.522)
OP1: (58.848,109.260,10.189)
OP2: (57.443,107.146,10.600)
C3': (62.080,105.750,11.619)
C1': (62.971,107.909,11.367)
C5': (60.355,106.454,9.991)
O4': (62.452,107.545,10.103)
C8: (61.694,110.122,11.357)
O2': (62.921,106.965,13.594)
C6: (64.070,112.569,12.199)
C5: (63.241,111.483,11.883)
C4: (63.819,110.221,11.901)
P: (58.533,108.070,11.013)
C4': (61.814,106.243,10.200)
C2': (62.207,107.066,12.382)
C2: (65.790,111.035,12.474)
N1: (65.367,112.308,12.495)
N3: (65.105,109.922,12.193)
N6: (63.646,113.833,12.222)
N7: (61.898,111.406,11.539)
N9: (62.818,109.350,11.540)
O5': (59.847,107.193,11.114)
O3': (63.321,105.056,11.694)
OP2: (57.443,107.146,10.600)
C3': (62.080,105.750,11.619)
C1': (62.971,107.909,11.367)
C5': (60.355,106.454,9.991)
O4': (62.452,107.545,10.103)
C8: (61.694,110.122,11.357)
O2': (62.921,106.965,13.594)
C6: (64.070,112.569,12.199)
C5: (63.241,111.483,11.883)
C4: (63.819,110.221,11.901)
P: (58.533,108.070,11.013)
C4': (61.814,106.243,10.200)
C2': (62.207,107.066,12.382)
C2: (65.790,111.035,12.474)
N1: (65.367,112.308,12.495)
N3: (65.105,109.922,12.193)
N6: (63.646,113.833,12.222)
N7: (61.898,111.406,11.539)
N9: (62.818,109.350,11.540)
O5': (59.847,107.193,11.114)
O3': (63.321,105.056,11.694)
Image (generated by PyMOL):