Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0223:0224
Extra
PDB:
ATOM 1 O3' A A 222 53.480 110.521 16.771 1.00 45.07 O
ATOM 2 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 3 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 4 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 5 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
ATOM 6 C5' C A 223 55.676 109.152 13.952 1.00 44.80 C
ATOM 7 C4' C A 223 57.045 108.590 14.231 1.00 45.52 C
ATOM 8 O4' C A 223 56.975 107.664 15.346 1.00 46.13 O
ATOM 9 C3' C A 223 57.596 107.773 13.085 1.00 46.18 C
ATOM 10 O3' C A 223 58.199 108.633 12.123 1.00 47.83 O
ATOM 11 C2' C A 223 58.546 106.808 13.785 1.00 44.10 C
ATOM 12 O2' C A 223 59.794 107.365 14.126 1.00 42.96 O
ATOM 13 C1' C A 223 57.780 106.525 15.078 1.00 43.87 C
ATOM 14 N1 C A 223 56.901 105.342 14.999 1.00 42.79 N
ATOM 15 C2 C A 223 57.478 104.058 14.963 1.00 43.14 C
ATOM 16 O2 C A 223 58.713 103.943 15.016 1.00 44.90 O
ATOM 17 N3 C A 223 56.671 102.977 14.873 1.00 42.70 N
ATOM 18 C4 C A 223 55.344 103.133 14.828 1.00 42.82 C
ATOM 19 N4 C A 223 54.591 102.038 14.733 1.00 44.35 N
ATOM 20 C5 C A 223 54.732 104.420 14.878 1.00 42.70 C
ATOM 21 C6 C A 223 55.539 105.485 14.958 1.00 43.68 C
ATOM 22 P A A 224 58.317 108.159 10.595 1.00 47.74 P
ATOM 23 OP1 A A 224 58.927 109.258 9.804 1.00 49.30 O
ATOM 24 OP2 A A 224 56.981 107.628 10.210 1.00 45.96 O
ATOM 25 O5' A A 224 59.363 106.965 10.690 1.00 44.02 O
TER
ATOM 1 O3' C B 223 58.199 108.633 12.123 1.00 47.83 O
ATOM 2 P A B 224 58.317 108.159 10.595 1.00 47.74 P
ATOM 3 OP1 A B 224 58.927 109.258 9.804 1.00 49.30 O
ATOM 4 OP2 A B 224 56.981 107.628 10.210 1.00 45.96 O
ATOM 5 O5' A B 224 59.363 106.965 10.690 1.00 44.02 O
ATOM 6 C5' A B 224 60.085 106.501 9.550 1.00 44.05 C
ATOM 7 C4' A B 224 61.555 106.435 9.877 1.00 45.37 C
ATOM 8 O4' A B 224 62.113 107.773 9.804 1.00 45.63 O
ATOM 9 C3' A B 224 61.880 105.911 11.274 1.00 45.85 C
ATOM 10 O3' A B 224 63.146 105.248 11.286 1.00 46.68 O
ATOM 11 C2' A B 224 62.002 107.210 12.068 1.00 45.95 C
ATOM 12 O2' A B 224 62.800 107.098 13.225 1.00 47.95 O
ATOM 13 C1' A B 224 62.686 108.109 11.046 1.00 45.32 C
ATOM 14 N9 A B 224 62.523 109.546 11.247 1.00 43.46 N
ATOM 15 C8 A B 224 61.396 110.314 11.080 1.00 43.08 C
ATOM 16 N7 A B 224 61.595 111.594 11.281 1.00 41.62 N
ATOM 17 C5 A B 224 62.940 111.672 11.614 1.00 40.95 C
ATOM 18 C6 A B 224 63.766 112.753 11.932 1.00 41.16 C
ATOM 19 N6 A B 224 63.340 114.017 11.962 1.00 42.13 N
ATOM 20 N1 A B 224 65.063 112.492 12.222 1.00 40.79 N
ATOM 21 C2 A B 224 65.484 111.222 12.192 1.00 40.83 C
ATOM 22 N3 A B 224 64.801 110.119 11.905 1.00 41.81 N
ATOM 23 C4 A B 224 63.519 110.417 11.616 1.00 42.05 C
ATOM 24 P G B 225 63.340 103.844 10.517 1.00 48.55 P
ATOM 25 OP1 G B 225 62.062 103.551 9.814 1.00 45.24 O
ATOM 26 OP2 G B 225 63.916 102.830 11.440 1.00 47.75 O
ATOM 27 O5' G B 225 64.469 104.202 9.446 1.00 49.18 O
TER
ATOM 2 P C A 223 53.696 110.367 15.188 1.00 47.54 P
ATOM 3 OP1 C A 223 53.668 111.744 14.627 1.00 47.81 O
ATOM 4 OP2 C A 223 52.760 109.337 14.662 1.00 45.60 O
ATOM 5 O5' C A 223 55.185 109.808 15.111 1.00 45.81 O
ATOM 6 C5' C A 223 55.676 109.152 13.952 1.00 44.80 C
ATOM 7 C4' C A 223 57.045 108.590 14.231 1.00 45.52 C
ATOM 8 O4' C A 223 56.975 107.664 15.346 1.00 46.13 O
ATOM 9 C3' C A 223 57.596 107.773 13.085 1.00 46.18 C
ATOM 10 O3' C A 223 58.199 108.633 12.123 1.00 47.83 O
ATOM 11 C2' C A 223 58.546 106.808 13.785 1.00 44.10 C
ATOM 12 O2' C A 223 59.794 107.365 14.126 1.00 42.96 O
ATOM 13 C1' C A 223 57.780 106.525 15.078 1.00 43.87 C
ATOM 14 N1 C A 223 56.901 105.342 14.999 1.00 42.79 N
ATOM 15 C2 C A 223 57.478 104.058 14.963 1.00 43.14 C
ATOM 16 O2 C A 223 58.713 103.943 15.016 1.00 44.90 O
ATOM 17 N3 C A 223 56.671 102.977 14.873 1.00 42.70 N
ATOM 18 C4 C A 223 55.344 103.133 14.828 1.00 42.82 C
ATOM 19 N4 C A 223 54.591 102.038 14.733 1.00 44.35 N
ATOM 20 C5 C A 223 54.732 104.420 14.878 1.00 42.70 C
ATOM 21 C6 C A 223 55.539 105.485 14.958 1.00 43.68 C
ATOM 22 P A A 224 58.317 108.159 10.595 1.00 47.74 P
ATOM 23 OP1 A A 224 58.927 109.258 9.804 1.00 49.30 O
ATOM 24 OP2 A A 224 56.981 107.628 10.210 1.00 45.96 O
ATOM 25 O5' A A 224 59.363 106.965 10.690 1.00 44.02 O
TER
ATOM 1 O3' C B 223 58.199 108.633 12.123 1.00 47.83 O
ATOM 2 P A B 224 58.317 108.159 10.595 1.00 47.74 P
ATOM 3 OP1 A B 224 58.927 109.258 9.804 1.00 49.30 O
ATOM 4 OP2 A B 224 56.981 107.628 10.210 1.00 45.96 O
ATOM 5 O5' A B 224 59.363 106.965 10.690 1.00 44.02 O
ATOM 6 C5' A B 224 60.085 106.501 9.550 1.00 44.05 C
ATOM 7 C4' A B 224 61.555 106.435 9.877 1.00 45.37 C
ATOM 8 O4' A B 224 62.113 107.773 9.804 1.00 45.63 O
ATOM 9 C3' A B 224 61.880 105.911 11.274 1.00 45.85 C
ATOM 10 O3' A B 224 63.146 105.248 11.286 1.00 46.68 O
ATOM 11 C2' A B 224 62.002 107.210 12.068 1.00 45.95 C
ATOM 12 O2' A B 224 62.800 107.098 13.225 1.00 47.95 O
ATOM 13 C1' A B 224 62.686 108.109 11.046 1.00 45.32 C
ATOM 14 N9 A B 224 62.523 109.546 11.247 1.00 43.46 N
ATOM 15 C8 A B 224 61.396 110.314 11.080 1.00 43.08 C
ATOM 16 N7 A B 224 61.595 111.594 11.281 1.00 41.62 N
ATOM 17 C5 A B 224 62.940 111.672 11.614 1.00 40.95 C
ATOM 18 C6 A B 224 63.766 112.753 11.932 1.00 41.16 C
ATOM 19 N6 A B 224 63.340 114.017 11.962 1.00 42.13 N
ATOM 20 N1 A B 224 65.063 112.492 12.222 1.00 40.79 N
ATOM 21 C2 A B 224 65.484 111.222 12.192 1.00 40.83 C
ATOM 22 N3 A B 224 64.801 110.119 11.905 1.00 41.81 N
ATOM 23 C4 A B 224 63.519 110.417 11.616 1.00 42.05 C
ATOM 24 P G B 225 63.340 103.844 10.517 1.00 48.55 P
ATOM 25 OP1 G B 225 62.062 103.551 9.814 1.00 45.24 O
ATOM 26 OP2 G B 225 63.916 102.830 11.440 1.00 47.75 O
ATOM 27 O5' G B 225 64.469 104.202 9.446 1.00 49.18 O
TER
Atoms:
C2: (57.478,104.058,14.963)
OP1: (53.668,111.744,14.627)
OP2: (52.760,109.337,14.662)
C4: (55.344,103.133,14.828)
O5': (55.185,109.808,15.111)
C3': (57.596,107.773,13.085)
C1': (57.780,106.525,15.078)
O4': (56.975,107.664,15.346)
C5': (55.676,109.152,13.952)
P: (53.696,110.367,15.188)
O2: (58.713,103.943,15.016)
C4': (57.045,108.590,14.231)
C2': (58.546,106.808,13.785)
O2': (59.794,107.365,14.126)
N1: (56.901,105.342,14.999)
N3: (56.671,102.977,14.873)
N4: (54.591,102.038,14.733)
C6: (55.539,105.485,14.958)
C5: (54.732,104.420,14.878)
O3': (58.199,108.633,12.123)
OP1: (53.668,111.744,14.627)
OP2: (52.760,109.337,14.662)
C4: (55.344,103.133,14.828)
O5': (55.185,109.808,15.111)
C3': (57.596,107.773,13.085)
C1': (57.780,106.525,15.078)
O4': (56.975,107.664,15.346)
C5': (55.676,109.152,13.952)
P: (53.696,110.367,15.188)
O2: (58.713,103.943,15.016)
C4': (57.045,108.590,14.231)
C2': (58.546,106.808,13.785)
O2': (59.794,107.365,14.126)
N1: (56.901,105.342,14.999)
N3: (56.671,102.977,14.873)
N4: (54.591,102.038,14.733)
C6: (55.539,105.485,14.958)
C5: (54.732,104.420,14.878)
O3': (58.199,108.633,12.123)
OP1: (58.927,109.258,9.804)
OP2: (56.981,107.628,10.210)
C3': (61.880,105.911,11.274)
C1': (62.686,108.109,11.046)
C5': (60.085,106.501,9.550)
O4': (62.113,107.773,9.804)
C8: (61.396,110.314,11.080)
O2': (62.800,107.098,13.225)
C6: (63.766,112.753,11.932)
C5: (62.940,111.672,11.614)
C4: (63.519,110.417,11.616)
P: (58.317,108.159,10.595)
C4': (61.555,106.435,9.877)
C2': (62.002,107.210,12.068)
C2: (65.484,111.222,12.192)
N1: (65.063,112.492,12.222)
N3: (64.801,110.119,11.905)
N6: (63.340,114.017,11.962)
N7: (61.595,111.594,11.281)
N9: (62.523,109.546,11.247)
O5': (59.363,106.965,10.690)
O3': (63.146,105.248,11.286)
OP2: (56.981,107.628,10.210)
C3': (61.880,105.911,11.274)
C1': (62.686,108.109,11.046)
C5': (60.085,106.501,9.550)
O4': (62.113,107.773,9.804)
C8: (61.396,110.314,11.080)
O2': (62.800,107.098,13.225)
C6: (63.766,112.753,11.932)
C5: (62.940,111.672,11.614)
C4: (63.519,110.417,11.616)
P: (58.317,108.159,10.595)
C4': (61.555,106.435,9.877)
C2': (62.002,107.210,12.068)
C2: (65.484,111.222,12.192)
N1: (65.063,112.492,12.222)
N3: (64.801,110.119,11.905)
N6: (63.340,114.017,11.962)
N7: (61.595,111.594,11.281)
N9: (62.523,109.546,11.247)
O5': (59.363,106.965,10.690)
O3': (63.146,105.248,11.286)
Image (generated by PyMOL):