Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0223:0224
Extra
PDB:
ATOM 1 O3' A A 222 53.778 110.622 16.928 1.00 56.42 O
ATOM 2 P C A 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 3 OP1 C A 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 4 OP2 C A 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 5 O5' C A 223 55.587 109.892 15.337 1.00 59.76 O
ATOM 6 C5' C A 223 56.148 109.274 14.169 1.00 58.12 C
ATOM 7 C4' C A 223 57.468 108.636 14.520 1.00 58.90 C
ATOM 8 O4' C A 223 57.266 107.717 15.623 1.00 59.34 O
ATOM 9 C3' C A 223 58.094 107.775 13.439 1.00 60.20 C
ATOM 10 O3' C A 223 58.834 108.550 12.507 1.00 61.60 O
ATOM 11 C2' C A 223 58.986 106.843 14.242 1.00 58.55 C
ATOM 12 O2' C A 223 60.179 107.463 14.663 1.00 59.10 O
ATOM 13 C1' C A 223 58.108 106.580 15.465 1.00 58.77 C
ATOM 14 N1 C A 223 57.256 105.384 15.320 1.00 58.13 N
ATOM 15 C2 C A 223 57.859 104.106 15.247 1.00 59.01 C
ATOM 16 O2 C A 223 59.099 104.006 15.325 1.00 58.18 O
ATOM 17 N3 C A 223 57.069 103.017 15.097 1.00 59.76 N
ATOM 18 C4 C A 223 55.738 103.160 15.029 1.00 59.54 C
ATOM 19 N4 C A 223 54.998 102.063 14.878 1.00 60.28 N
ATOM 20 C5 C A 223 55.107 104.435 15.111 1.00 58.38 C
ATOM 21 C6 C A 223 55.893 105.506 15.253 1.00 58.62 C
ATOM 22 P A A 224 58.640 108.303 10.928 1.00 61.83 P
ATOM 23 OP1 A A 224 58.093 109.573 10.374 1.00 62.02 O
ATOM 24 OP2 A A 224 57.895 107.027 10.708 1.00 60.61 O
ATOM 25 O5' A A 224 60.133 108.121 10.404 1.00 58.24 O
TER
ATOM 1 O3' C B 223 58.834 108.550 12.507 1.00 61.60 O
ATOM 2 P A B 224 58.640 108.303 10.928 1.00 61.83 P
ATOM 3 OP1 A B 224 58.093 109.573 10.374 1.00 62.02 O
ATOM 4 OP2 A B 224 57.895 107.027 10.708 1.00 60.61 O
ATOM 5 O5' A B 224 60.133 108.121 10.404 1.00 58.24 O
ATOM 6 C5' A B 224 60.536 106.952 9.676 1.00 57.11 C
ATOM 7 C4' A B 224 61.923 106.557 10.099 1.00 57.19 C
ATOM 8 O4' A B 224 62.741 107.753 10.099 1.00 56.98 O
ATOM 9 C3' A B 224 62.020 105.994 11.510 1.00 57.59 C
ATOM 10 O3' A B 224 63.197 105.196 11.653 1.00 60.64 O
ATOM 11 C2' A B 224 62.199 107.263 12.338 1.00 58.06 C
ATOM 12 O2' A B 224 62.827 107.038 13.588 1.00 58.67 O
ATOM 13 C1' A B 224 63.097 108.088 11.420 1.00 55.88 C
ATOM 14 N9 A B 224 62.972 109.537 11.559 1.00 53.79 N
ATOM 15 C8 A B 224 61.868 110.336 11.379 1.00 52.28 C
ATOM 16 N7 A B 224 62.104 111.614 11.562 1.00 50.47 N
ATOM 17 C5 A B 224 63.451 111.656 11.891 1.00 51.69 C
ATOM 18 C6 A B 224 64.311 112.715 12.208 1.00 52.45 C
ATOM 19 N6 A B 224 63.924 113.993 12.263 1.00 54.17 N
ATOM 20 N1 A B 224 65.603 112.416 12.478 1.00 52.77 N
ATOM 21 C2 A B 224 65.988 111.135 12.439 1.00 52.75 C
ATOM 22 N3 A B 224 65.272 110.052 12.163 1.00 52.77 N
ATOM 23 C4 A B 224 63.997 110.385 11.894 1.00 52.85 C
ATOM 24 P G B 225 63.486 103.956 10.662 1.00 62.86 P
ATOM 25 OP1 G B 225 62.571 104.038 9.498 1.00 62.82 O
ATOM 26 OP2 G B 225 63.538 102.698 11.463 1.00 64.39 O
ATOM 27 O5' G B 225 64.983 104.249 10.192 1.00 64.07 O
TER
ATOM 2 P C A 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 3 OP1 C A 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 4 OP2 C A 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 5 O5' C A 223 55.587 109.892 15.337 1.00 59.76 O
ATOM 6 C5' C A 223 56.148 109.274 14.169 1.00 58.12 C
ATOM 7 C4' C A 223 57.468 108.636 14.520 1.00 58.90 C
ATOM 8 O4' C A 223 57.266 107.717 15.623 1.00 59.34 O
ATOM 9 C3' C A 223 58.094 107.775 13.439 1.00 60.20 C
ATOM 10 O3' C A 223 58.834 108.550 12.507 1.00 61.60 O
ATOM 11 C2' C A 223 58.986 106.843 14.242 1.00 58.55 C
ATOM 12 O2' C A 223 60.179 107.463 14.663 1.00 59.10 O
ATOM 13 C1' C A 223 58.108 106.580 15.465 1.00 58.77 C
ATOM 14 N1 C A 223 57.256 105.384 15.320 1.00 58.13 N
ATOM 15 C2 C A 223 57.859 104.106 15.247 1.00 59.01 C
ATOM 16 O2 C A 223 59.099 104.006 15.325 1.00 58.18 O
ATOM 17 N3 C A 223 57.069 103.017 15.097 1.00 59.76 N
ATOM 18 C4 C A 223 55.738 103.160 15.029 1.00 59.54 C
ATOM 19 N4 C A 223 54.998 102.063 14.878 1.00 60.28 N
ATOM 20 C5 C A 223 55.107 104.435 15.111 1.00 58.38 C
ATOM 21 C6 C A 223 55.893 105.506 15.253 1.00 58.62 C
ATOM 22 P A A 224 58.640 108.303 10.928 1.00 61.83 P
ATOM 23 OP1 A A 224 58.093 109.573 10.374 1.00 62.02 O
ATOM 24 OP2 A A 224 57.895 107.027 10.708 1.00 60.61 O
ATOM 25 O5' A A 224 60.133 108.121 10.404 1.00 58.24 O
TER
ATOM 1 O3' C B 223 58.834 108.550 12.507 1.00 61.60 O
ATOM 2 P A B 224 58.640 108.303 10.928 1.00 61.83 P
ATOM 3 OP1 A B 224 58.093 109.573 10.374 1.00 62.02 O
ATOM 4 OP2 A B 224 57.895 107.027 10.708 1.00 60.61 O
ATOM 5 O5' A B 224 60.133 108.121 10.404 1.00 58.24 O
ATOM 6 C5' A B 224 60.536 106.952 9.676 1.00 57.11 C
ATOM 7 C4' A B 224 61.923 106.557 10.099 1.00 57.19 C
ATOM 8 O4' A B 224 62.741 107.753 10.099 1.00 56.98 O
ATOM 9 C3' A B 224 62.020 105.994 11.510 1.00 57.59 C
ATOM 10 O3' A B 224 63.197 105.196 11.653 1.00 60.64 O
ATOM 11 C2' A B 224 62.199 107.263 12.338 1.00 58.06 C
ATOM 12 O2' A B 224 62.827 107.038 13.588 1.00 58.67 O
ATOM 13 C1' A B 224 63.097 108.088 11.420 1.00 55.88 C
ATOM 14 N9 A B 224 62.972 109.537 11.559 1.00 53.79 N
ATOM 15 C8 A B 224 61.868 110.336 11.379 1.00 52.28 C
ATOM 16 N7 A B 224 62.104 111.614 11.562 1.00 50.47 N
ATOM 17 C5 A B 224 63.451 111.656 11.891 1.00 51.69 C
ATOM 18 C6 A B 224 64.311 112.715 12.208 1.00 52.45 C
ATOM 19 N6 A B 224 63.924 113.993 12.263 1.00 54.17 N
ATOM 20 N1 A B 224 65.603 112.416 12.478 1.00 52.77 N
ATOM 21 C2 A B 224 65.988 111.135 12.439 1.00 52.75 C
ATOM 22 N3 A B 224 65.272 110.052 12.163 1.00 52.77 N
ATOM 23 C4 A B 224 63.997 110.385 11.894 1.00 52.85 C
ATOM 24 P G B 225 63.486 103.956 10.662 1.00 62.86 P
ATOM 25 OP1 G B 225 62.571 104.038 9.498 1.00 62.82 O
ATOM 26 OP2 G B 225 63.538 102.698 11.463 1.00 64.39 O
ATOM 27 O5' G B 225 64.983 104.249 10.192 1.00 64.07 O
TER
Atoms:
C2: (57.859,104.106,15.247)
OP1: (54.129,111.854,14.805)
OP2: (53.192,109.464,14.761)
C4: (55.738,103.160,15.029)
O5': (55.587,109.892,15.337)
C3': (58.094,107.775,13.439)
C1': (58.108,106.580,15.465)
O4': (57.266,107.717,15.623)
C5': (56.148,109.274,14.169)
P: (54.101,110.475,15.357)
O2: (59.099,104.006,15.325)
C4': (57.468,108.636,14.520)
C2': (58.986,106.843,14.242)
O2': (60.179,107.463,14.663)
N1: (57.256,105.384,15.320)
N3: (57.069,103.017,15.097)
N4: (54.998,102.063,14.878)
C6: (55.893,105.506,15.253)
C5: (55.107,104.435,15.111)
O3': (58.834,108.550,12.507)
OP1: (54.129,111.854,14.805)
OP2: (53.192,109.464,14.761)
C4: (55.738,103.160,15.029)
O5': (55.587,109.892,15.337)
C3': (58.094,107.775,13.439)
C1': (58.108,106.580,15.465)
O4': (57.266,107.717,15.623)
C5': (56.148,109.274,14.169)
P: (54.101,110.475,15.357)
O2: (59.099,104.006,15.325)
C4': (57.468,108.636,14.520)
C2': (58.986,106.843,14.242)
O2': (60.179,107.463,14.663)
N1: (57.256,105.384,15.320)
N3: (57.069,103.017,15.097)
N4: (54.998,102.063,14.878)
C6: (55.893,105.506,15.253)
C5: (55.107,104.435,15.111)
O3': (58.834,108.550,12.507)
OP1: (58.093,109.573,10.374)
OP2: (57.895,107.027,10.708)
C3': (62.020,105.994,11.510)
C1': (63.097,108.088,11.420)
C5': (60.536,106.952,9.676)
O4': (62.741,107.753,10.099)
C8: (61.868,110.336,11.379)
O2': (62.827,107.038,13.588)
C6: (64.311,112.715,12.208)
C5: (63.451,111.656,11.891)
C4: (63.997,110.385,11.894)
P: (58.640,108.303,10.928)
C4': (61.923,106.557,10.099)
C2': (62.199,107.263,12.338)
C2: (65.988,111.135,12.439)
N1: (65.603,112.416,12.478)
N3: (65.272,110.052,12.163)
N6: (63.924,113.993,12.263)
N7: (62.104,111.614,11.562)
N9: (62.972,109.537,11.559)
O5': (60.133,108.121,10.404)
O3': (63.197,105.196,11.653)
OP2: (57.895,107.027,10.708)
C3': (62.020,105.994,11.510)
C1': (63.097,108.088,11.420)
C5': (60.536,106.952,9.676)
O4': (62.741,107.753,10.099)
C8: (61.868,110.336,11.379)
O2': (62.827,107.038,13.588)
C6: (64.311,112.715,12.208)
C5: (63.451,111.656,11.891)
C4: (63.997,110.385,11.894)
P: (58.640,108.303,10.928)
C4': (61.923,106.557,10.099)
C2': (62.199,107.263,12.338)
C2: (65.988,111.135,12.439)
N1: (65.603,112.416,12.478)
N3: (65.272,110.052,12.163)
N6: (63.924,113.993,12.263)
N7: (62.104,111.614,11.562)
N9: (62.972,109.537,11.559)
O5': (60.133,108.121,10.404)
O3': (63.197,105.196,11.653)
Image (generated by PyMOL):