Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0223:0224
Extra
PDB:
ATOM 1 O3' A A 222 53.501 110.442 16.801 1.00 48.02 O
ATOM 2 P C A 223 53.693 110.353 15.211 1.00 49.36 P
ATOM 3 OP1 C A 223 53.559 111.732 14.692 1.00 50.92 O
ATOM 4 OP2 C A 223 52.831 109.270 14.667 1.00 48.78 O
ATOM 5 O5' C A 223 55.213 109.917 15.053 1.00 48.86 O
ATOM 6 C5' C A 223 55.645 109.142 13.936 1.00 46.55 C
ATOM 7 C4' C A 223 56.998 108.562 14.220 1.00 45.40 C
ATOM 8 O4' C A 223 56.901 107.632 15.323 1.00 45.12 O
ATOM 9 C3' C A 223 57.570 107.726 13.102 1.00 45.63 C
ATOM 10 O3' C A 223 58.156 108.564 12.128 1.00 48.39 O
ATOM 11 C2' C A 223 58.575 106.857 13.840 1.00 43.96 C
ATOM 12 O2' C A 223 59.758 107.539 14.191 1.00 39.61 O
ATOM 13 C1' C A 223 57.801 106.554 15.119 1.00 44.87 C
ATOM 14 N1 C A 223 57.029 105.303 15.026 1.00 46.60 N
ATOM 15 C2 C A 223 57.721 104.080 14.988 1.00 48.42 C
ATOM 16 O2 C A 223 58.965 104.079 15.054 1.00 49.11 O
ATOM 17 N3 C A 223 57.019 102.933 14.887 1.00 49.69 N
ATOM 18 C4 C A 223 55.685 102.967 14.836 1.00 49.24 C
ATOM 19 N4 C A 223 55.041 101.804 14.739 1.00 51.67 N
ATOM 20 C5 C A 223 54.957 104.191 14.883 1.00 47.18 C
ATOM 21 C6 C A 223 55.661 105.322 14.975 1.00 47.00 C
ATOM 22 P A A 224 58.272 108.061 10.615 1.00 49.19 P
ATOM 23 OP1 A A 224 57.960 109.249 9.779 1.00 50.50 O
ATOM 24 OP2 A A 224 57.461 106.819 10.470 1.00 49.03 O
ATOM 25 O5' A A 224 59.817 107.700 10.462 1.00 44.99 O
TER
ATOM 1 O3' C B 223 58.156 108.564 12.128 1.00 48.39 O
ATOM 2 P A B 224 58.272 108.061 10.615 1.00 49.19 P
ATOM 3 OP1 A B 224 57.960 109.249 9.779 1.00 50.50 O
ATOM 4 OP2 A B 224 57.461 106.819 10.470 1.00 49.03 O
ATOM 5 O5' A B 224 59.817 107.700 10.462 1.00 44.99 O
ATOM 6 C5' A B 224 60.265 106.661 9.583 1.00 44.81 C
ATOM 7 C4' A B 224 61.675 106.274 9.941 1.00 46.98 C
ATOM 8 O4' A B 224 62.509 107.455 9.890 1.00 47.10 O
ATOM 9 C3' A B 224 61.852 105.726 11.348 1.00 49.12 C
ATOM 10 O3' A B 224 63.055 104.969 11.446 1.00 52.36 O
ATOM 11 C2' A B 224 62.034 107.001 12.157 1.00 49.59 C
ATOM 12 O2' A B 224 62.714 106.798 13.379 1.00 50.39 O
ATOM 13 C1' A B 224 62.875 107.840 11.197 1.00 47.83 C
ATOM 14 N9 A B 224 62.649 109.279 11.309 1.00 47.99 N
ATOM 15 C8 A B 224 61.492 109.985 11.068 1.00 46.85 C
ATOM 16 N7 A B 224 61.623 111.280 11.215 1.00 45.97 N
ATOM 17 C5 A B 224 62.952 111.438 11.583 1.00 46.18 C
ATOM 18 C6 A B 224 63.716 112.570 11.871 1.00 45.88 C
ATOM 19 N6 A B 224 63.232 113.811 11.834 1.00 46.70 N
ATOM 20 N1 A B 224 65.013 112.387 12.204 1.00 46.46 N
ATOM 21 C2 A B 224 65.495 111.139 12.245 1.00 46.80 C
ATOM 22 N3 A B 224 64.876 109.992 11.994 1.00 47.60 N
ATOM 23 C4 A B 224 63.591 110.214 11.661 1.00 47.26 C
ATOM 24 P G B 225 63.291 103.677 10.518 1.00 55.26 P
ATOM 25 OP1 G B 225 62.074 103.470 9.681 1.00 53.41 O
ATOM 26 OP2 G B 225 63.786 102.560 11.379 1.00 56.53 O
ATOM 27 O5' G B 225 64.499 104.157 9.590 1.00 55.40 O
TER
ATOM 2 P C A 223 53.693 110.353 15.211 1.00 49.36 P
ATOM 3 OP1 C A 223 53.559 111.732 14.692 1.00 50.92 O
ATOM 4 OP2 C A 223 52.831 109.270 14.667 1.00 48.78 O
ATOM 5 O5' C A 223 55.213 109.917 15.053 1.00 48.86 O
ATOM 6 C5' C A 223 55.645 109.142 13.936 1.00 46.55 C
ATOM 7 C4' C A 223 56.998 108.562 14.220 1.00 45.40 C
ATOM 8 O4' C A 223 56.901 107.632 15.323 1.00 45.12 O
ATOM 9 C3' C A 223 57.570 107.726 13.102 1.00 45.63 C
ATOM 10 O3' C A 223 58.156 108.564 12.128 1.00 48.39 O
ATOM 11 C2' C A 223 58.575 106.857 13.840 1.00 43.96 C
ATOM 12 O2' C A 223 59.758 107.539 14.191 1.00 39.61 O
ATOM 13 C1' C A 223 57.801 106.554 15.119 1.00 44.87 C
ATOM 14 N1 C A 223 57.029 105.303 15.026 1.00 46.60 N
ATOM 15 C2 C A 223 57.721 104.080 14.988 1.00 48.42 C
ATOM 16 O2 C A 223 58.965 104.079 15.054 1.00 49.11 O
ATOM 17 N3 C A 223 57.019 102.933 14.887 1.00 49.69 N
ATOM 18 C4 C A 223 55.685 102.967 14.836 1.00 49.24 C
ATOM 19 N4 C A 223 55.041 101.804 14.739 1.00 51.67 N
ATOM 20 C5 C A 223 54.957 104.191 14.883 1.00 47.18 C
ATOM 21 C6 C A 223 55.661 105.322 14.975 1.00 47.00 C
ATOM 22 P A A 224 58.272 108.061 10.615 1.00 49.19 P
ATOM 23 OP1 A A 224 57.960 109.249 9.779 1.00 50.50 O
ATOM 24 OP2 A A 224 57.461 106.819 10.470 1.00 49.03 O
ATOM 25 O5' A A 224 59.817 107.700 10.462 1.00 44.99 O
TER
ATOM 1 O3' C B 223 58.156 108.564 12.128 1.00 48.39 O
ATOM 2 P A B 224 58.272 108.061 10.615 1.00 49.19 P
ATOM 3 OP1 A B 224 57.960 109.249 9.779 1.00 50.50 O
ATOM 4 OP2 A B 224 57.461 106.819 10.470 1.00 49.03 O
ATOM 5 O5' A B 224 59.817 107.700 10.462 1.00 44.99 O
ATOM 6 C5' A B 224 60.265 106.661 9.583 1.00 44.81 C
ATOM 7 C4' A B 224 61.675 106.274 9.941 1.00 46.98 C
ATOM 8 O4' A B 224 62.509 107.455 9.890 1.00 47.10 O
ATOM 9 C3' A B 224 61.852 105.726 11.348 1.00 49.12 C
ATOM 10 O3' A B 224 63.055 104.969 11.446 1.00 52.36 O
ATOM 11 C2' A B 224 62.034 107.001 12.157 1.00 49.59 C
ATOM 12 O2' A B 224 62.714 106.798 13.379 1.00 50.39 O
ATOM 13 C1' A B 224 62.875 107.840 11.197 1.00 47.83 C
ATOM 14 N9 A B 224 62.649 109.279 11.309 1.00 47.99 N
ATOM 15 C8 A B 224 61.492 109.985 11.068 1.00 46.85 C
ATOM 16 N7 A B 224 61.623 111.280 11.215 1.00 45.97 N
ATOM 17 C5 A B 224 62.952 111.438 11.583 1.00 46.18 C
ATOM 18 C6 A B 224 63.716 112.570 11.871 1.00 45.88 C
ATOM 19 N6 A B 224 63.232 113.811 11.834 1.00 46.70 N
ATOM 20 N1 A B 224 65.013 112.387 12.204 1.00 46.46 N
ATOM 21 C2 A B 224 65.495 111.139 12.245 1.00 46.80 C
ATOM 22 N3 A B 224 64.876 109.992 11.994 1.00 47.60 N
ATOM 23 C4 A B 224 63.591 110.214 11.661 1.00 47.26 C
ATOM 24 P G B 225 63.291 103.677 10.518 1.00 55.26 P
ATOM 25 OP1 G B 225 62.074 103.470 9.681 1.00 53.41 O
ATOM 26 OP2 G B 225 63.786 102.560 11.379 1.00 56.53 O
ATOM 27 O5' G B 225 64.499 104.157 9.590 1.00 55.40 O
TER
Atoms:
C2: (57.721,104.080,14.988)
OP1: (53.559,111.732,14.692)
OP2: (52.831,109.270,14.667)
C4: (55.685,102.967,14.836)
O5': (55.213,109.917,15.053)
C3': (57.570,107.726,13.102)
C1': (57.801,106.554,15.119)
O4': (56.901,107.632,15.323)
C5': (55.645,109.142,13.936)
P: (53.693,110.353,15.211)
O2: (58.965,104.079,15.054)
C4': (56.998,108.562,14.220)
C2': (58.575,106.857,13.840)
O2': (59.758,107.539,14.191)
N1: (57.029,105.303,15.026)
N3: (57.019,102.933,14.887)
N4: (55.041,101.804,14.739)
C6: (55.661,105.322,14.975)
C5: (54.957,104.191,14.883)
O3': (58.156,108.564,12.128)
OP1: (53.559,111.732,14.692)
OP2: (52.831,109.270,14.667)
C4: (55.685,102.967,14.836)
O5': (55.213,109.917,15.053)
C3': (57.570,107.726,13.102)
C1': (57.801,106.554,15.119)
O4': (56.901,107.632,15.323)
C5': (55.645,109.142,13.936)
P: (53.693,110.353,15.211)
O2: (58.965,104.079,15.054)
C4': (56.998,108.562,14.220)
C2': (58.575,106.857,13.840)
O2': (59.758,107.539,14.191)
N1: (57.029,105.303,15.026)
N3: (57.019,102.933,14.887)
N4: (55.041,101.804,14.739)
C6: (55.661,105.322,14.975)
C5: (54.957,104.191,14.883)
O3': (58.156,108.564,12.128)
OP1: (57.960,109.249,9.779)
OP2: (57.461,106.819,10.470)
C3': (61.852,105.726,11.348)
C1': (62.875,107.840,11.197)
C5': (60.265,106.661,9.583)
O4': (62.509,107.455,9.890)
C8: (61.492,109.985,11.068)
O2': (62.714,106.798,13.379)
C6: (63.716,112.570,11.871)
C5: (62.952,111.438,11.583)
C4: (63.591,110.214,11.661)
P: (58.272,108.061,10.615)
C4': (61.675,106.274,9.941)
C2': (62.034,107.001,12.157)
C2: (65.495,111.139,12.245)
N1: (65.013,112.387,12.204)
N3: (64.876,109.992,11.994)
N6: (63.232,113.811,11.834)
N7: (61.623,111.280,11.215)
N9: (62.649,109.279,11.309)
O5': (59.817,107.700,10.462)
O3': (63.055,104.969,11.446)
OP2: (57.461,106.819,10.470)
C3': (61.852,105.726,11.348)
C1': (62.875,107.840,11.197)
C5': (60.265,106.661,9.583)
O4': (62.509,107.455,9.890)
C8: (61.492,109.985,11.068)
O2': (62.714,106.798,13.379)
C6: (63.716,112.570,11.871)
C5: (62.952,111.438,11.583)
C4: (63.591,110.214,11.661)
P: (58.272,108.061,10.615)
C4': (61.675,106.274,9.941)
C2': (62.034,107.001,12.157)
C2: (65.495,111.139,12.245)
N1: (65.013,112.387,12.204)
N3: (64.876,109.992,11.994)
N6: (63.232,113.811,11.834)
N7: (61.623,111.280,11.215)
N9: (62.649,109.279,11.309)
O5': (59.817,107.700,10.462)
O3': (63.055,104.969,11.446)
Image (generated by PyMOL):