Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12120:12121
Extra
PDB:
ATOM 1 O3' A A2119 -11.728 -5.325 89.074 1.00 50.35 O
ATOM 2 P A A2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A A2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A A2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A A2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A A2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A A2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A A2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A A2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A A2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A A2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A A2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A A2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A A2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A A2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A A2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A A2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A A2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A A2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A A2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A A2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A A2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A A2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U A2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U A2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U A2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U A2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
ATOM 1 O3' A B2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 2 P U B2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 3 OP1 U B2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 4 OP2 U B2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 5 O5' U B2121 -6.394 -5.859 91.701 1.00 57.01 O
ATOM 6 C5' U B2121 -6.158 -6.877 90.780 1.00 56.80 C
ATOM 7 C4' U B2121 -4.944 -6.587 89.999 1.00 56.47 C
ATOM 8 O4' U B2121 -4.809 -7.636 89.020 1.00 56.30 O
ATOM 9 C3' U B2121 -5.015 -5.271 89.228 1.00 56.45 C
ATOM 10 O3' U B2121 -3.890 -4.416 89.420 1.00 56.29 O
ATOM 11 C2' U B2121 -5.059 -5.699 87.788 1.00 56.28 C
ATOM 12 O2' U B2121 -4.415 -4.805 86.878 1.00 56.10 O
ATOM 13 C1' U B2121 -4.399 -7.072 87.824 1.00 56.10 C
ATOM 14 N1 U B2121 -4.852 -7.901 86.703 1.00 56.05 N
ATOM 15 C2 U B2121 -4.079 -8.852 86.025 1.00 55.80 C
ATOM 16 O2 U B2121 -2.963 -9.302 86.398 1.00 55.61 O
ATOM 17 N3 U B2121 -4.811 -9.260 84.896 1.00 55.84 N
ATOM 18 C4 U B2121 -6.075 -8.805 84.424 1.00 56.07 C
ATOM 19 O4 U B2121 -6.609 -9.245 83.389 1.00 56.08 O
ATOM 20 C5 U B2121 -6.725 -7.801 85.177 1.00 56.29 C
ATOM 21 C6 U B2121 -6.075 -7.407 86.231 1.00 56.27 C
ATOM 22 P G B2122 -4.081 -2.862 89.007 1.00 39.27 P
ATOM 23 OP1 G B2122 -4.442 -2.800 87.598 1.00 39.19 O
ATOM 24 OP2 G B2122 -2.885 -2.137 89.426 1.00 39.14 O
ATOM 25 O5' G B2122 -5.349 -2.426 89.873 1.00 39.66 O
TER
ATOM 2 P A A2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A A2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A A2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A A2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A A2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A A2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A A2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A A2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A A2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A A2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A A2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A A2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A A2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A A2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A A2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A A2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A A2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A A2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A A2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A A2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A A2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A A2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U A2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U A2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U A2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U A2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
ATOM 1 O3' A B2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 2 P U B2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 3 OP1 U B2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 4 OP2 U B2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 5 O5' U B2121 -6.394 -5.859 91.701 1.00 57.01 O
ATOM 6 C5' U B2121 -6.158 -6.877 90.780 1.00 56.80 C
ATOM 7 C4' U B2121 -4.944 -6.587 89.999 1.00 56.47 C
ATOM 8 O4' U B2121 -4.809 -7.636 89.020 1.00 56.30 O
ATOM 9 C3' U B2121 -5.015 -5.271 89.228 1.00 56.45 C
ATOM 10 O3' U B2121 -3.890 -4.416 89.420 1.00 56.29 O
ATOM 11 C2' U B2121 -5.059 -5.699 87.788 1.00 56.28 C
ATOM 12 O2' U B2121 -4.415 -4.805 86.878 1.00 56.10 O
ATOM 13 C1' U B2121 -4.399 -7.072 87.824 1.00 56.10 C
ATOM 14 N1 U B2121 -4.852 -7.901 86.703 1.00 56.05 N
ATOM 15 C2 U B2121 -4.079 -8.852 86.025 1.00 55.80 C
ATOM 16 O2 U B2121 -2.963 -9.302 86.398 1.00 55.61 O
ATOM 17 N3 U B2121 -4.811 -9.260 84.896 1.00 55.84 N
ATOM 18 C4 U B2121 -6.075 -8.805 84.424 1.00 56.07 C
ATOM 19 O4 U B2121 -6.609 -9.245 83.389 1.00 56.08 O
ATOM 20 C5 U B2121 -6.725 -7.801 85.177 1.00 56.29 C
ATOM 21 C6 U B2121 -6.075 -7.407 86.231 1.00 56.27 C
ATOM 22 P G B2122 -4.081 -2.862 89.007 1.00 39.27 P
ATOM 23 OP1 G B2122 -4.442 -2.800 87.598 1.00 39.19 O
ATOM 24 OP2 G B2122 -2.885 -2.137 89.426 1.00 39.14 O
ATOM 25 O5' G B2122 -5.349 -2.426 89.873 1.00 39.66 O
TER
Atoms:
OP1: (-11.012,-7.403,90.189)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
C4: (-6.075,-8.805,84.424)
N3: (-4.811,-9.260,84.896)
OP1: (-6.507,-7.351,93.624)
OP2: (-4.638,-5.752,93.367)
C2: (-4.079,-8.852,86.025)
C1': (-4.399,-7.072,87.824)
C3': (-5.015,-5.271,89.228)
O5': (-6.394,-5.859,91.701)
O4': (-4.809,-7.636,89.020)
C5': (-6.158,-6.877,90.780)
P: (-6.023,-6.074,93.185)
C4': (-4.944,-6.587,89.999)
C2': (-5.059,-5.699,87.788)
O2': (-4.415,-4.805,86.878)
N1: (-4.852,-7.901,86.703)
O4: (-6.609,-9.245,83.389)
O2: (-2.963,-9.302,86.398)
C6: (-6.075,-7.407,86.231)
C5: (-6.725,-7.801,85.177)
O3': (-3.890,-4.416,89.420)
N3: (-4.811,-9.260,84.896)
OP1: (-6.507,-7.351,93.624)
OP2: (-4.638,-5.752,93.367)
C2: (-4.079,-8.852,86.025)
C1': (-4.399,-7.072,87.824)
C3': (-5.015,-5.271,89.228)
O5': (-6.394,-5.859,91.701)
O4': (-4.809,-7.636,89.020)
C5': (-6.158,-6.877,90.780)
P: (-6.023,-6.074,93.185)
C4': (-4.944,-6.587,89.999)
C2': (-5.059,-5.699,87.788)
O2': (-4.415,-4.805,86.878)
N1: (-4.852,-7.901,86.703)
O4: (-6.609,-9.245,83.389)
O2: (-2.963,-9.302,86.398)
C6: (-6.075,-7.407,86.231)
C5: (-6.725,-7.801,85.177)
O3': (-3.890,-4.416,89.420)
Image (generated by PyMOL):