Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:388:389
Extra
PDB:
ATOM 1 O3' G A 87 39.556 -9.181 14.607 1.00 47.98 O
ATOM 2 P G A 88 38.940 -8.031 15.525 1.00 44.10 P
ATOM 3 OP1 G A 88 38.634 -6.896 14.624 1.00 44.65 O
ATOM 4 OP2 G A 88 39.846 -7.814 16.667 1.00 43.37 O
ATOM 5 O5' G A 88 37.618 -8.697 16.028 1.00 43.91 O
ATOM 6 C5' G A 88 36.483 -8.740 15.186 1.00 44.49 C
ATOM 7 C4' G A 88 35.365 -9.422 15.867 1.00 44.20 C
ATOM 8 O4' G A 88 35.789 -10.730 16.297 1.00 43.93 O
ATOM 9 C3' G A 88 34.871 -8.780 17.151 1.00 43.50 C
ATOM 10 O3' G A 88 34.087 -7.614 16.916 1.00 43.71 O
ATOM 11 C2' G A 88 34.092 -9.946 17.759 1.00 43.24 C
ATOM 12 O2' G A 88 32.862 -10.146 17.034 1.00 43.78 O
ATOM 13 C1' G A 88 35.031 -11.117 17.411 1.00 43.36 C
ATOM 14 N9 G A 88 35.956 -11.441 18.489 1.00 42.67 N
ATOM 15 C8 G A 88 37.259 -11.092 18.518 1.00 42.53 C
ATOM 16 N7 G A 88 37.870 -11.497 19.576 1.00 41.88 N
ATOM 17 C5 G A 88 36.931 -12.156 20.280 1.00 41.59 C
ATOM 18 C6 G A 88 37.046 -12.788 21.505 1.00 40.91 C
ATOM 19 O6 G A 88 38.072 -12.872 22.170 1.00 40.44 O
ATOM 20 N1 G A 88 35.860 -13.361 21.934 1.00 40.80 N
ATOM 21 C2 G A 88 34.697 -13.311 21.236 1.00 41.30 C
ATOM 22 N2 G A 88 33.650 -13.900 21.772 1.00 41.14 N
ATOM 23 N3 G A 88 34.568 -12.718 20.075 1.00 41.94 N
ATOM 24 C4 G A 88 35.733 -12.154 19.643 1.00 42.06 C
ATOM 25 P U A 89 34.337 -6.271 17.722 1.00 55.10 P
ATOM 26 OP1 U A 89 33.264 -5.353 17.364 1.00 55.42 O
ATOM 27 OP2 U A 89 35.731 -5.863 17.499 1.00 55.10 O
ATOM 28 O5' U A 89 34.154 -6.731 19.219 1.00 54.28 O
TER
ATOM 1 O3' G B 88 34.087 -7.614 16.916 1.00 43.71 O
ATOM 2 P U B 89 34.337 -6.271 17.722 1.00 55.10 P
ATOM 3 OP1 U B 89 33.264 -5.353 17.364 1.00 55.42 O
ATOM 4 OP2 U B 89 35.731 -5.863 17.499 1.00 55.10 O
ATOM 5 O5' U B 89 34.154 -6.731 19.219 1.00 54.28 O
ATOM 6 C5' U B 89 34.405 -5.836 20.296 1.00 53.68 C
ATOM 7 C4' U B 89 33.336 -5.940 21.371 1.00 53.20 C
ATOM 8 O4' U B 89 32.021 -5.589 20.851 1.00 53.63 O
ATOM 9 C3' U B 89 33.075 -7.304 21.979 1.00 52.88 C
ATOM 10 O3' U B 89 34.094 -7.728 22.834 1.00 52.31 O
ATOM 11 C2' U B 89 31.781 -7.041 22.708 1.00 52.64 C
ATOM 12 O2' U B 89 32.028 -6.246 23.850 1.00 52.03 O
ATOM 13 C1' U B 89 31.044 -6.180 21.688 1.00 53.28 C
ATOM 14 N1 U B 89 30.126 -6.975 20.875 1.00 53.81 N
ATOM 15 C2 U B 89 29.064 -7.529 21.591 1.00 53.55 C
ATOM 16 O2 U B 89 28.874 -7.378 22.818 1.00 52.93 O
ATOM 17 N3 U B 89 28.202 -8.266 20.809 1.00 54.08 N
ATOM 18 C4 U B 89 28.313 -8.502 19.462 1.00 54.79 C
ATOM 19 O4 U B 89 27.443 -9.212 18.948 1.00 55.18 O
ATOM 20 C5 U B 89 29.428 -7.899 18.803 1.00 55.01 C
ATOM 21 C6 U B 89 30.285 -7.169 19.519 1.00 54.52 C
ATOM 22 P G B 90 34.640 -9.225 22.759 1.00 43.74 P
ATOM 23 OP1 G B 90 35.597 -9.389 23.905 1.00 43.02 O
ATOM 24 OP2 G B 90 35.132 -9.433 21.370 1.00 44.44 O
ATOM 25 O5' G B 90 33.351 -10.097 22.993 1.00 43.75 O
TER
ATOM 2 P G A 88 38.940 -8.031 15.525 1.00 44.10 P
ATOM 3 OP1 G A 88 38.634 -6.896 14.624 1.00 44.65 O
ATOM 4 OP2 G A 88 39.846 -7.814 16.667 1.00 43.37 O
ATOM 5 O5' G A 88 37.618 -8.697 16.028 1.00 43.91 O
ATOM 6 C5' G A 88 36.483 -8.740 15.186 1.00 44.49 C
ATOM 7 C4' G A 88 35.365 -9.422 15.867 1.00 44.20 C
ATOM 8 O4' G A 88 35.789 -10.730 16.297 1.00 43.93 O
ATOM 9 C3' G A 88 34.871 -8.780 17.151 1.00 43.50 C
ATOM 10 O3' G A 88 34.087 -7.614 16.916 1.00 43.71 O
ATOM 11 C2' G A 88 34.092 -9.946 17.759 1.00 43.24 C
ATOM 12 O2' G A 88 32.862 -10.146 17.034 1.00 43.78 O
ATOM 13 C1' G A 88 35.031 -11.117 17.411 1.00 43.36 C
ATOM 14 N9 G A 88 35.956 -11.441 18.489 1.00 42.67 N
ATOM 15 C8 G A 88 37.259 -11.092 18.518 1.00 42.53 C
ATOM 16 N7 G A 88 37.870 -11.497 19.576 1.00 41.88 N
ATOM 17 C5 G A 88 36.931 -12.156 20.280 1.00 41.59 C
ATOM 18 C6 G A 88 37.046 -12.788 21.505 1.00 40.91 C
ATOM 19 O6 G A 88 38.072 -12.872 22.170 1.00 40.44 O
ATOM 20 N1 G A 88 35.860 -13.361 21.934 1.00 40.80 N
ATOM 21 C2 G A 88 34.697 -13.311 21.236 1.00 41.30 C
ATOM 22 N2 G A 88 33.650 -13.900 21.772 1.00 41.14 N
ATOM 23 N3 G A 88 34.568 -12.718 20.075 1.00 41.94 N
ATOM 24 C4 G A 88 35.733 -12.154 19.643 1.00 42.06 C
ATOM 25 P U A 89 34.337 -6.271 17.722 1.00 55.10 P
ATOM 26 OP1 U A 89 33.264 -5.353 17.364 1.00 55.42 O
ATOM 27 OP2 U A 89 35.731 -5.863 17.499 1.00 55.10 O
ATOM 28 O5' U A 89 34.154 -6.731 19.219 1.00 54.28 O
TER
ATOM 1 O3' G B 88 34.087 -7.614 16.916 1.00 43.71 O
ATOM 2 P U B 89 34.337 -6.271 17.722 1.00 55.10 P
ATOM 3 OP1 U B 89 33.264 -5.353 17.364 1.00 55.42 O
ATOM 4 OP2 U B 89 35.731 -5.863 17.499 1.00 55.10 O
ATOM 5 O5' U B 89 34.154 -6.731 19.219 1.00 54.28 O
ATOM 6 C5' U B 89 34.405 -5.836 20.296 1.00 53.68 C
ATOM 7 C4' U B 89 33.336 -5.940 21.371 1.00 53.20 C
ATOM 8 O4' U B 89 32.021 -5.589 20.851 1.00 53.63 O
ATOM 9 C3' U B 89 33.075 -7.304 21.979 1.00 52.88 C
ATOM 10 O3' U B 89 34.094 -7.728 22.834 1.00 52.31 O
ATOM 11 C2' U B 89 31.781 -7.041 22.708 1.00 52.64 C
ATOM 12 O2' U B 89 32.028 -6.246 23.850 1.00 52.03 O
ATOM 13 C1' U B 89 31.044 -6.180 21.688 1.00 53.28 C
ATOM 14 N1 U B 89 30.126 -6.975 20.875 1.00 53.81 N
ATOM 15 C2 U B 89 29.064 -7.529 21.591 1.00 53.55 C
ATOM 16 O2 U B 89 28.874 -7.378 22.818 1.00 52.93 O
ATOM 17 N3 U B 89 28.202 -8.266 20.809 1.00 54.08 N
ATOM 18 C4 U B 89 28.313 -8.502 19.462 1.00 54.79 C
ATOM 19 O4 U B 89 27.443 -9.212 18.948 1.00 55.18 O
ATOM 20 C5 U B 89 29.428 -7.899 18.803 1.00 55.01 C
ATOM 21 C6 U B 89 30.285 -7.169 19.519 1.00 54.52 C
ATOM 22 P G B 90 34.640 -9.225 22.759 1.00 43.74 P
ATOM 23 OP1 G B 90 35.597 -9.389 23.905 1.00 43.02 O
ATOM 24 OP2 G B 90 35.132 -9.433 21.370 1.00 44.44 O
ATOM 25 O5' G B 90 33.351 -10.097 22.993 1.00 43.75 O
TER
Atoms:
OP1: (38.634,-6.896,14.624)
OP2: (39.846,-7.814,16.667)
C3': (34.871,-8.780,17.151)
C1': (35.031,-11.117,17.411)
C5': (36.483,-8.740,15.186)
O6: (38.072,-12.872,22.170)
O4': (35.789,-10.730,16.297)
C8: (37.259,-11.092,18.518)
C2: (34.697,-13.311,21.236)
C6: (37.046,-12.788,21.505)
C5: (36.931,-12.156,20.280)
C4: (35.733,-12.154,19.643)
P: (38.940,-8.031,15.525)
C4': (35.365,-9.422,15.867)
C2': (34.092,-9.946,17.759)
O2': (32.862,-10.146,17.034)
N1: (35.860,-13.361,21.934)
N2: (33.650,-13.900,21.772)
N3: (34.568,-12.718,20.075)
N7: (37.870,-11.497,19.576)
N9: (35.956,-11.441,18.489)
O5': (37.618,-8.697,16.028)
O3': (34.087,-7.614,16.916)
OP2: (39.846,-7.814,16.667)
C3': (34.871,-8.780,17.151)
C1': (35.031,-11.117,17.411)
C5': (36.483,-8.740,15.186)
O6: (38.072,-12.872,22.170)
O4': (35.789,-10.730,16.297)
C8: (37.259,-11.092,18.518)
C2: (34.697,-13.311,21.236)
C6: (37.046,-12.788,21.505)
C5: (36.931,-12.156,20.280)
C4: (35.733,-12.154,19.643)
P: (38.940,-8.031,15.525)
C4': (35.365,-9.422,15.867)
C2': (34.092,-9.946,17.759)
O2': (32.862,-10.146,17.034)
N1: (35.860,-13.361,21.934)
N2: (33.650,-13.900,21.772)
N3: (34.568,-12.718,20.075)
N7: (37.870,-11.497,19.576)
N9: (35.956,-11.441,18.489)
O5': (37.618,-8.697,16.028)
O3': (34.087,-7.614,16.916)
C4: (28.313,-8.502,19.462)
N3: (28.202,-8.266,20.809)
OP1: (33.264,-5.353,17.364)
OP2: (35.731,-5.863,17.499)
C2: (29.064,-7.529,21.591)
C1': (31.044,-6.180,21.688)
C3': (33.075,-7.304,21.979)
O5': (34.154,-6.731,19.219)
O4': (32.021,-5.589,20.851)
C5': (34.405,-5.836,20.296)
P: (34.337,-6.271,17.722)
C4': (33.336,-5.940,21.371)
C2': (31.781,-7.041,22.708)
O2': (32.028,-6.246,23.850)
N1: (30.126,-6.975,20.875)
O4: (27.443,-9.212,18.948)
O2: (28.874,-7.378,22.818)
C6: (30.285,-7.169,19.519)
C5: (29.428,-7.899,18.803)
O3': (34.094,-7.728,22.834)
N3: (28.202,-8.266,20.809)
OP1: (33.264,-5.353,17.364)
OP2: (35.731,-5.863,17.499)
C2: (29.064,-7.529,21.591)
C1': (31.044,-6.180,21.688)
C3': (33.075,-7.304,21.979)
O5': (34.154,-6.731,19.219)
O4': (32.021,-5.589,20.851)
C5': (34.405,-5.836,20.296)
P: (34.337,-6.271,17.722)
C4': (33.336,-5.940,21.371)
C2': (31.781,-7.041,22.708)
O2': (32.028,-6.246,23.850)
N1: (30.126,-6.975,20.875)
O4: (27.443,-9.212,18.948)
O2: (28.874,-7.378,22.818)
C6: (30.285,-7.169,19.519)
C5: (29.428,-7.899,18.803)
O3': (34.094,-7.728,22.834)
Image (generated by PyMOL):