Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01086:02016
Extra
PDB:
ATOM 1 O3' C A1085 45.630 99.357 111.733 1.00 45.70 O
ATOM 2 P C A1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C A1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C A1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C A1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C A1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C A1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C A1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C A1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C A1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C A1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C A1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C A1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C A1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C A1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C A1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C A1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C A1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C A1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C A1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C A1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U A1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U A1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U A1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U A1087 47.550 102.545 115.997 1.00 42.63 O
TER
ATOM 1 O3' U B2015 42.386 108.740 109.893 1.00 29.91 O
ATOM 2 P G B2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G B2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G B2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G B2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G B2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G B2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G B2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G B2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G B2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G B2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G B2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G B2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G B2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G B2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G B2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G B2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G B2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G B2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G B2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G B2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G B2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G B2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G B2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C B2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C B2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C B2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C B2017 46.220 108.396 102.991 1.00 31.79 O
TER
ATOM 2 P C A1086 47.087 99.353 111.052 1.00 46.52 P
ATOM 3 OP1 C A1086 47.019 100.139 109.790 1.00 46.61 O
ATOM 4 OP2 C A1086 47.569 97.948 111.012 1.00 46.12 O
ATOM 5 O5' C A1086 47.966 100.184 112.086 1.00 44.52 O
ATOM 6 C5' C A1086 49.343 99.875 112.317 1.00 41.80 C
ATOM 7 C4' C A1086 50.083 101.128 112.694 1.00 41.91 C
ATOM 8 O4' C A1086 50.249 101.961 111.521 1.00 40.34 O
ATOM 9 C3' C A1086 49.379 102.012 113.714 1.00 40.95 C
ATOM 10 O3' C A1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 11 C2' C A1086 49.969 103.387 113.420 1.00 39.79 C
ATOM 12 O2' C A1086 51.211 103.586 114.056 1.00 41.29 O
ATOM 13 C1' C A1086 50.181 103.326 111.899 1.00 39.90 C
ATOM 14 N1 C A1086 49.143 103.990 111.081 1.00 39.03 N
ATOM 15 C2 C A1086 48.964 105.379 111.199 1.00 36.87 C
ATOM 16 O2 C A1086 49.683 106.017 111.979 1.00 36.14 O
ATOM 17 N3 C A1086 48.015 105.986 110.452 1.00 35.65 N
ATOM 18 C4 C A1086 47.278 105.271 109.602 1.00 34.78 C
ATOM 19 N4 C A1086 46.373 105.917 108.868 1.00 36.34 N
ATOM 20 C5 C A1086 47.439 103.864 109.461 1.00 35.51 C
ATOM 21 C6 C A1086 48.367 103.269 110.214 1.00 36.50 C
ATOM 22 P U A1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 23 OP1 U A1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 24 OP2 U A1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 25 O5' U A1087 47.550 102.545 115.997 1.00 42.63 O
TER
ATOM 1 O3' U B2015 42.386 108.740 109.893 1.00 29.91 O
ATOM 2 P G B2016 43.611 108.071 109.080 1.00 30.67 P
ATOM 3 OP1 G B2016 43.290 106.635 108.910 1.00 32.75 O
ATOM 4 OP2 G B2016 44.894 108.455 109.720 1.00 29.63 O
ATOM 5 O5' G B2016 43.561 108.765 107.648 1.00 29.09 O
ATOM 6 C5' G B2016 42.447 108.585 106.754 1.00 27.55 C
ATOM 7 C4' G B2016 42.549 109.566 105.605 1.00 30.25 C
ATOM 8 O4' G B2016 42.488 110.924 106.128 1.00 29.97 O
ATOM 9 C3' G B2016 43.871 109.517 104.852 1.00 30.37 C
ATOM 10 O3' G B2016 43.859 108.487 103.870 1.00 31.74 O
ATOM 11 C2' G B2016 43.979 110.920 104.266 1.00 29.82 C
ATOM 12 O2' G B2016 43.229 111.122 103.090 1.00 31.20 O
ATOM 13 C1' G B2016 43.354 111.762 105.379 1.00 30.35 C
ATOM 14 N9 G B2016 44.345 112.359 106.271 1.00 31.98 N
ATOM 15 C8 G B2016 44.913 111.803 107.395 1.00 31.37 C
ATOM 16 N7 G B2016 45.802 112.581 107.956 1.00 31.41 N
ATOM 17 C5 G B2016 45.821 113.718 107.159 1.00 30.78 C
ATOM 18 C6 G B2016 46.604 114.897 107.254 1.00 31.41 C
ATOM 19 O6 G B2016 47.489 115.172 108.080 1.00 31.92 O
ATOM 20 N1 G B2016 46.286 115.803 106.244 1.00 29.98 N
ATOM 21 C2 G B2016 45.349 115.593 105.261 1.00 28.70 C
ATOM 22 N2 G B2016 45.178 116.577 104.375 1.00 27.42 N
ATOM 23 N3 G B2016 44.632 114.498 105.153 1.00 29.27 N
ATOM 24 C4 G B2016 44.915 113.607 106.126 1.00 31.20 C
ATOM 25 P C B2017 45.124 107.500 103.720 1.00 32.75 P
ATOM 26 OP1 C B2017 44.703 106.417 102.804 1.00 29.74 O
ATOM 27 OP2 C B2017 45.652 107.147 105.072 1.00 34.09 O
ATOM 28 O5' C B2017 46.220 108.396 102.991 1.00 31.79 O
TER
Atoms:
C2: (48.964,105.379,111.199)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
OP1: (47.019,100.139,109.790)
OP2: (47.569,97.948,111.012)
C4: (47.278,105.271,109.602)
O5': (47.966,100.184,112.086)
C3': (49.379,102.012,113.714)
C1': (50.181,103.326,111.899)
O4': (50.249,101.961,111.521)
C5': (49.343,99.875,112.317)
P: (47.087,99.353,111.052)
O2: (49.683,106.017,111.979)
C4': (50.083,101.128,112.694)
C2': (49.969,103.387,113.420)
O2': (51.211,103.586,114.056)
N1: (49.143,103.990,111.081)
N3: (48.015,105.986,110.452)
N4: (46.373,105.917,108.868)
C6: (48.367,103.269,110.214)
C5: (47.439,103.864,109.461)
O3': (49.684,101.587,115.050)
OP1: (43.290,106.635,108.910)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
OP2: (44.894,108.455,109.720)
C3': (43.871,109.517,104.852)
C1': (43.354,111.762,105.379)
C5': (42.447,108.585,106.754)
O6: (47.489,115.172,108.080)
O4': (42.488,110.924,106.128)
C8: (44.913,111.803,107.395)
C2: (45.349,115.593,105.261)
C6: (46.604,114.897,107.254)
C5: (45.821,113.718,107.159)
C4: (44.915,113.607,106.126)
P: (43.611,108.071,109.080)
C4': (42.549,109.566,105.605)
C2': (43.979,110.920,104.266)
O2': (43.229,111.122,103.090)
N1: (46.286,115.803,106.244)
N2: (45.178,116.577,104.375)
N3: (44.632,114.498,105.153)
N7: (45.802,112.581,107.956)
N9: (44.345,112.359,106.271)
O5': (43.561,108.765,107.648)
O3': (43.859,108.487,103.870)
Image (generated by PyMOL):