Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11089:11275
Extra
PDB:
ATOM 1 O3' U A1088 58.728 -9.047 44.738 1.00 34.58 O
ATOM 2 P G A1089 58.210 -7.614 45.171 1.00 33.46 P
ATOM 3 OP1 G A1089 57.668 -7.717 46.562 1.00 33.27 O
ATOM 4 OP2 G A1089 57.335 -7.162 44.092 1.00 33.54 O
ATOM 5 O5' G A1089 59.512 -6.764 45.194 1.00 33.53 O
ATOM 6 C5' G A1089 59.970 -6.142 44.029 1.00 33.69 C
ATOM 7 C4' G A1089 61.457 -6.221 43.911 1.00 33.80 C
ATOM 8 O4' G A1089 61.888 -7.566 44.129 1.00 33.81 O
ATOM 9 C3' G A1089 61.982 -5.874 42.558 1.00 34.01 C
ATOM 10 O3' G A1089 62.167 -4.512 42.409 1.00 34.05 O
ATOM 11 C2' G A1089 63.233 -6.715 42.406 1.00 34.12 C
ATOM 12 O2' G A1089 64.307 -6.135 43.073 1.00 34.12 O
ATOM 13 C1' G A1089 62.829 -7.944 43.169 1.00 34.00 C
ATOM 14 N9 G A1089 62.190 -8.939 42.303 1.00 34.08 N
ATOM 15 C8 G A1089 60.946 -9.424 42.486 1.00 33.98 C
ATOM 16 N7 G A1089 60.700 -10.304 41.597 1.00 34.10 N
ATOM 17 C5 G A1089 61.821 -10.407 40.799 1.00 34.29 C
ATOM 18 C6 G A1089 62.127 -11.203 39.692 1.00 34.50 C
ATOM 19 O6 G A1089 61.478 -12.066 39.116 1.00 34.57 O
ATOM 20 N1 G A1089 63.369 -10.979 39.203 1.00 34.65 N
ATOM 21 C2 G A1089 64.283 -10.138 39.715 1.00 34.63 C
ATOM 22 N2 G A1089 65.461 -10.154 39.064 1.00 34.82 N
ATOM 23 N3 G A1089 64.029 -9.385 40.767 1.00 34.44 N
ATOM 24 C4 G A1089 62.777 -9.580 41.239 1.00 34.28 C
ATOM 25 P C A1090 61.759 -3.874 41.048 1.00 33.51 P
ATOM 26 OP1 C A1090 62.045 -2.473 41.170 1.00 33.54 O
ATOM 27 OP2 C A1090 60.394 -4.293 40.737 1.00 33.46 O
ATOM 28 O5' C A1090 62.740 -4.578 40.016 1.00 33.71 O
TER
ATOM 1 O3' A B1274 69.323 -5.063 32.365 1.00 38.23 O
ATOM 2 P U B1275 70.796 -5.695 32.319 1.00 32.36 P
ATOM 3 OP1 U B1275 71.698 -4.626 32.781 1.00 32.37 O
ATOM 4 OP2 U B1275 71.005 -6.278 30.974 1.00 32.64 O
ATOM 5 O5' U B1275 70.731 -6.871 33.373 1.00 32.16 O
ATOM 6 C5' U B1275 70.285 -6.669 34.687 1.00 31.88 C
ATOM 7 C4' U B1275 70.339 -7.950 35.461 1.00 31.77 C
ATOM 8 O4' U B1275 70.159 -7.657 36.853 1.00 31.52 O
ATOM 9 C3' U B1275 69.276 -8.959 35.139 1.00 31.74 C
ATOM 10 O3' U B1275 69.671 -10.180 35.697 1.00 31.71 O
ATOM 11 C2' U B1275 68.160 -8.459 36.019 1.00 31.47 C
ATOM 12 O2' U B1275 67.132 -9.406 36.216 1.00 31.36 O
ATOM 13 C1' U B1275 68.964 -8.206 37.299 1.00 31.33 C
ATOM 14 N1 U B1275 68.417 -7.235 38.209 1.00 31.13 N
ATOM 15 C2 U B1275 67.961 -7.563 39.481 1.00 30.90 C
ATOM 16 O2 U B1275 67.869 -8.714 39.865 1.00 30.85 O
ATOM 17 N3 U B1275 67.568 -6.502 40.274 1.00 30.74 N
ATOM 18 C4 U B1275 67.628 -5.165 39.864 1.00 30.80 C
ATOM 19 O4 U B1275 67.253 -4.237 40.607 1.00 30.67 O
ATOM 20 C5 U B1275 68.167 -4.939 38.549 1.00 31.05 C
ATOM 21 C6 U B1275 68.574 -5.952 37.792 1.00 31.20 C
ATOM 22 P A B1276 70.517 -11.273 34.909 1.00 33.52 P
ATOM 23 OP1 A B1276 70.839 -12.320 35.890 1.00 33.42 O
ATOM 24 OP2 A B1276 71.625 -10.592 34.202 1.00 33.74 O
ATOM 25 O5' A B1276 69.469 -11.849 33.868 1.00 33.61 O
TER
ATOM 2 P G A1089 58.210 -7.614 45.171 1.00 33.46 P
ATOM 3 OP1 G A1089 57.668 -7.717 46.562 1.00 33.27 O
ATOM 4 OP2 G A1089 57.335 -7.162 44.092 1.00 33.54 O
ATOM 5 O5' G A1089 59.512 -6.764 45.194 1.00 33.53 O
ATOM 6 C5' G A1089 59.970 -6.142 44.029 1.00 33.69 C
ATOM 7 C4' G A1089 61.457 -6.221 43.911 1.00 33.80 C
ATOM 8 O4' G A1089 61.888 -7.566 44.129 1.00 33.81 O
ATOM 9 C3' G A1089 61.982 -5.874 42.558 1.00 34.01 C
ATOM 10 O3' G A1089 62.167 -4.512 42.409 1.00 34.05 O
ATOM 11 C2' G A1089 63.233 -6.715 42.406 1.00 34.12 C
ATOM 12 O2' G A1089 64.307 -6.135 43.073 1.00 34.12 O
ATOM 13 C1' G A1089 62.829 -7.944 43.169 1.00 34.00 C
ATOM 14 N9 G A1089 62.190 -8.939 42.303 1.00 34.08 N
ATOM 15 C8 G A1089 60.946 -9.424 42.486 1.00 33.98 C
ATOM 16 N7 G A1089 60.700 -10.304 41.597 1.00 34.10 N
ATOM 17 C5 G A1089 61.821 -10.407 40.799 1.00 34.29 C
ATOM 18 C6 G A1089 62.127 -11.203 39.692 1.00 34.50 C
ATOM 19 O6 G A1089 61.478 -12.066 39.116 1.00 34.57 O
ATOM 20 N1 G A1089 63.369 -10.979 39.203 1.00 34.65 N
ATOM 21 C2 G A1089 64.283 -10.138 39.715 1.00 34.63 C
ATOM 22 N2 G A1089 65.461 -10.154 39.064 1.00 34.82 N
ATOM 23 N3 G A1089 64.029 -9.385 40.767 1.00 34.44 N
ATOM 24 C4 G A1089 62.777 -9.580 41.239 1.00 34.28 C
ATOM 25 P C A1090 61.759 -3.874 41.048 1.00 33.51 P
ATOM 26 OP1 C A1090 62.045 -2.473 41.170 1.00 33.54 O
ATOM 27 OP2 C A1090 60.394 -4.293 40.737 1.00 33.46 O
ATOM 28 O5' C A1090 62.740 -4.578 40.016 1.00 33.71 O
TER
ATOM 1 O3' A B1274 69.323 -5.063 32.365 1.00 38.23 O
ATOM 2 P U B1275 70.796 -5.695 32.319 1.00 32.36 P
ATOM 3 OP1 U B1275 71.698 -4.626 32.781 1.00 32.37 O
ATOM 4 OP2 U B1275 71.005 -6.278 30.974 1.00 32.64 O
ATOM 5 O5' U B1275 70.731 -6.871 33.373 1.00 32.16 O
ATOM 6 C5' U B1275 70.285 -6.669 34.687 1.00 31.88 C
ATOM 7 C4' U B1275 70.339 -7.950 35.461 1.00 31.77 C
ATOM 8 O4' U B1275 70.159 -7.657 36.853 1.00 31.52 O
ATOM 9 C3' U B1275 69.276 -8.959 35.139 1.00 31.74 C
ATOM 10 O3' U B1275 69.671 -10.180 35.697 1.00 31.71 O
ATOM 11 C2' U B1275 68.160 -8.459 36.019 1.00 31.47 C
ATOM 12 O2' U B1275 67.132 -9.406 36.216 1.00 31.36 O
ATOM 13 C1' U B1275 68.964 -8.206 37.299 1.00 31.33 C
ATOM 14 N1 U B1275 68.417 -7.235 38.209 1.00 31.13 N
ATOM 15 C2 U B1275 67.961 -7.563 39.481 1.00 30.90 C
ATOM 16 O2 U B1275 67.869 -8.714 39.865 1.00 30.85 O
ATOM 17 N3 U B1275 67.568 -6.502 40.274 1.00 30.74 N
ATOM 18 C4 U B1275 67.628 -5.165 39.864 1.00 30.80 C
ATOM 19 O4 U B1275 67.253 -4.237 40.607 1.00 30.67 O
ATOM 20 C5 U B1275 68.167 -4.939 38.549 1.00 31.05 C
ATOM 21 C6 U B1275 68.574 -5.952 37.792 1.00 31.20 C
ATOM 22 P A B1276 70.517 -11.273 34.909 1.00 33.52 P
ATOM 23 OP1 A B1276 70.839 -12.320 35.890 1.00 33.42 O
ATOM 24 OP2 A B1276 71.625 -10.592 34.202 1.00 33.74 O
ATOM 25 O5' A B1276 69.469 -11.849 33.868 1.00 33.61 O
TER
Atoms:
OP1: (57.668,-7.717,46.562)
OP2: (57.335,-7.162,44.092)
C3': (61.982,-5.874,42.558)
C1': (62.829,-7.944,43.169)
C5': (59.970,-6.142,44.029)
O6: (61.478,-12.066,39.116)
O4': (61.888,-7.566,44.129)
C8: (60.946,-9.424,42.486)
C2: (64.283,-10.138,39.715)
C6: (62.127,-11.203,39.692)
C5: (61.821,-10.407,40.799)
C4: (62.777,-9.580,41.239)
P: (58.210,-7.614,45.171)
C4': (61.457,-6.221,43.911)
C2': (63.233,-6.715,42.406)
O2': (64.307,-6.135,43.073)
N1: (63.369,-10.979,39.203)
N2: (65.461,-10.154,39.064)
N3: (64.029,-9.385,40.767)
N7: (60.700,-10.304,41.597)
N9: (62.190,-8.939,42.303)
O5': (59.512,-6.764,45.194)
O3': (62.167,-4.512,42.409)
OP2: (57.335,-7.162,44.092)
C3': (61.982,-5.874,42.558)
C1': (62.829,-7.944,43.169)
C5': (59.970,-6.142,44.029)
O6: (61.478,-12.066,39.116)
O4': (61.888,-7.566,44.129)
C8: (60.946,-9.424,42.486)
C2: (64.283,-10.138,39.715)
C6: (62.127,-11.203,39.692)
C5: (61.821,-10.407,40.799)
C4: (62.777,-9.580,41.239)
P: (58.210,-7.614,45.171)
C4': (61.457,-6.221,43.911)
C2': (63.233,-6.715,42.406)
O2': (64.307,-6.135,43.073)
N1: (63.369,-10.979,39.203)
N2: (65.461,-10.154,39.064)
N3: (64.029,-9.385,40.767)
N7: (60.700,-10.304,41.597)
N9: (62.190,-8.939,42.303)
O5': (59.512,-6.764,45.194)
O3': (62.167,-4.512,42.409)
C4: (67.628,-5.165,39.864)
N3: (67.568,-6.502,40.274)
OP1: (71.698,-4.626,32.781)
OP2: (71.005,-6.278,30.974)
C2: (67.961,-7.563,39.481)
C1': (68.964,-8.206,37.299)
C3': (69.276,-8.959,35.139)
O5': (70.731,-6.871,33.373)
O4': (70.159,-7.657,36.853)
C5': (70.285,-6.669,34.687)
P: (70.796,-5.695,32.319)
C4': (70.339,-7.950,35.461)
C2': (68.160,-8.459,36.019)
O2': (67.132,-9.406,36.216)
N1: (68.417,-7.235,38.209)
O4: (67.253,-4.237,40.607)
O2: (67.869,-8.714,39.865)
C6: (68.574,-5.952,37.792)
C5: (68.167,-4.939,38.549)
O3': (69.671,-10.180,35.697)
N3: (67.568,-6.502,40.274)
OP1: (71.698,-4.626,32.781)
OP2: (71.005,-6.278,30.974)
C2: (67.961,-7.563,39.481)
C1': (68.964,-8.206,37.299)
C3': (69.276,-8.959,35.139)
O5': (70.731,-6.871,33.373)
O4': (70.159,-7.657,36.853)
C5': (70.285,-6.669,34.687)
P: (70.796,-5.695,32.319)
C4': (70.339,-7.950,35.461)
C2': (68.160,-8.459,36.019)
O2': (67.132,-9.406,36.216)
N1: (68.417,-7.235,38.209)
O4: (67.253,-4.237,40.607)
O2: (67.869,-8.714,39.865)
C6: (68.574,-5.952,37.792)
C5: (68.167,-4.939,38.549)
O3': (69.671,-10.180,35.697)
Image (generated by PyMOL):