Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01086:02016
Extra
PDB:
ATOM 1 O3' C A1085 45.859 99.581 112.154 1.00 48.41 O
ATOM 2 P C A1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 3 OP1 C A1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 4 OP2 C A1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 5 O5' C A1086 48.195 100.463 112.122 1.00 48.84 O
ATOM 6 C5' C A1086 49.460 100.037 112.627 1.00 46.71 C
ATOM 7 C4' C A1086 50.247 101.237 113.066 1.00 46.33 C
ATOM 8 O4' C A1086 50.449 102.097 111.920 1.00 44.48 O
ATOM 9 C3' C A1086 49.546 102.117 114.087 1.00 45.84 C
ATOM 10 O3' C A1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 11 C2' C A1086 50.197 103.471 113.845 1.00 45.53 C
ATOM 12 O2' C A1086 51.482 103.545 114.421 1.00 48.35 O
ATOM 13 C1' C A1086 50.393 103.451 112.329 1.00 44.85 C
ATOM 14 N1 C A1086 49.366 104.150 111.527 1.00 44.59 N
ATOM 15 C2 C A1086 49.200 105.544 111.675 1.00 42.68 C
ATOM 16 O2 C A1086 49.858 106.150 112.533 1.00 41.62 O
ATOM 17 N3 C A1086 48.323 106.186 110.879 1.00 42.05 N
ATOM 18 C4 C A1086 47.621 105.504 109.974 1.00 42.98 C
ATOM 19 N4 C A1086 46.791 106.188 109.179 1.00 43.59 N
ATOM 20 C5 C A1086 47.740 104.093 109.833 1.00 42.86 C
ATOM 21 C6 C A1086 48.606 103.462 110.624 1.00 42.42 C
ATOM 22 P U A1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 23 OP1 U A1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 24 OP2 U A1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 25 O5' U A1087 47.692 102.654 116.304 1.00 46.78 O
TER
ATOM 1 O3' U B2015 42.446 108.973 110.191 1.00 35.07 O
ATOM 2 P G B2016 43.653 108.301 109.368 1.00 33.41 P
ATOM 3 OP1 G B2016 43.280 106.884 109.148 1.00 34.70 O
ATOM 4 OP2 G B2016 44.930 108.630 110.040 1.00 33.82 O
ATOM 5 O5' G B2016 43.636 109.032 107.958 1.00 31.87 O
ATOM 6 C5' G B2016 42.641 108.729 106.966 1.00 29.42 C
ATOM 7 C4' G B2016 42.777 109.684 105.806 1.00 30.00 C
ATOM 8 O4' G B2016 42.685 111.044 106.304 1.00 30.02 O
ATOM 9 C3' G B2016 44.122 109.639 105.108 1.00 29.43 C
ATOM 10 O3' G B2016 44.138 108.594 104.142 1.00 31.70 O
ATOM 11 C2' G B2016 44.219 111.028 104.496 1.00 28.12 C
ATOM 12 O2' G B2016 43.447 111.181 103.337 1.00 30.64 O
ATOM 13 C1' G B2016 43.565 111.880 105.577 1.00 30.04 C
ATOM 14 N9 G B2016 44.518 112.486 106.504 1.00 33.06 N
ATOM 15 C8 G B2016 45.016 111.939 107.662 1.00 34.64 C
ATOM 16 N7 G B2016 45.887 112.708 108.258 1.00 35.58 N
ATOM 17 C5 G B2016 45.969 113.831 107.447 1.00 34.09 C
ATOM 18 C6 G B2016 46.771 114.989 107.567 1.00 34.89 C
ATOM 19 O6 G B2016 47.632 115.245 108.419 1.00 36.21 O
ATOM 20 N1 G B2016 46.509 115.898 106.547 1.00 33.03 N
ATOM 21 C2 G B2016 45.608 115.706 105.532 1.00 31.70 C
ATOM 22 N2 G B2016 45.468 116.711 104.663 1.00 31.96 N
ATOM 23 N3 G B2016 44.890 114.614 105.384 1.00 31.40 N
ATOM 24 C4 G B2016 45.115 113.723 106.373 1.00 32.83 C
ATOM 25 P C B2017 45.420 107.633 104.018 1.00 33.86 P
ATOM 26 OP1 C B2017 45.113 106.612 103.004 1.00 34.01 O
ATOM 27 OP2 C B2017 45.844 107.209 105.367 1.00 32.60 O
ATOM 28 O5' C B2017 46.537 108.585 103.417 1.00 32.30 O
TER
ATOM 2 P C A1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 3 OP1 C A1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 4 OP2 C A1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 5 O5' C A1086 48.195 100.463 112.122 1.00 48.84 O
ATOM 6 C5' C A1086 49.460 100.037 112.627 1.00 46.71 C
ATOM 7 C4' C A1086 50.247 101.237 113.066 1.00 46.33 C
ATOM 8 O4' C A1086 50.449 102.097 111.920 1.00 44.48 O
ATOM 9 C3' C A1086 49.546 102.117 114.087 1.00 45.84 C
ATOM 10 O3' C A1086 49.827 101.651 115.404 1.00 46.85 O
ATOM 11 C2' C A1086 50.197 103.471 113.845 1.00 45.53 C
ATOM 12 O2' C A1086 51.482 103.545 114.421 1.00 48.35 O
ATOM 13 C1' C A1086 50.393 103.451 112.329 1.00 44.85 C
ATOM 14 N1 C A1086 49.366 104.150 111.527 1.00 44.59 N
ATOM 15 C2 C A1086 49.200 105.544 111.675 1.00 42.68 C
ATOM 16 O2 C A1086 49.858 106.150 112.533 1.00 41.62 O
ATOM 17 N3 C A1086 48.323 106.186 110.879 1.00 42.05 N
ATOM 18 C4 C A1086 47.621 105.504 109.974 1.00 42.98 C
ATOM 19 N4 C A1086 46.791 106.188 109.179 1.00 43.59 N
ATOM 20 C5 C A1086 47.740 104.093 109.833 1.00 42.86 C
ATOM 21 C6 C A1086 48.606 103.462 110.624 1.00 42.42 C
ATOM 22 P U A1087 48.632 101.382 116.440 1.00 47.27 P
ATOM 23 OP1 U A1087 49.207 101.395 117.803 1.00 47.07 O
ATOM 24 OP2 U A1087 47.907 100.178 115.959 1.00 46.84 O
ATOM 25 O5' U A1087 47.692 102.654 116.304 1.00 46.78 O
TER
ATOM 1 O3' U B2015 42.446 108.973 110.191 1.00 35.07 O
ATOM 2 P G B2016 43.653 108.301 109.368 1.00 33.41 P
ATOM 3 OP1 G B2016 43.280 106.884 109.148 1.00 34.70 O
ATOM 4 OP2 G B2016 44.930 108.630 110.040 1.00 33.82 O
ATOM 5 O5' G B2016 43.636 109.032 107.958 1.00 31.87 O
ATOM 6 C5' G B2016 42.641 108.729 106.966 1.00 29.42 C
ATOM 7 C4' G B2016 42.777 109.684 105.806 1.00 30.00 C
ATOM 8 O4' G B2016 42.685 111.044 106.304 1.00 30.02 O
ATOM 9 C3' G B2016 44.122 109.639 105.108 1.00 29.43 C
ATOM 10 O3' G B2016 44.138 108.594 104.142 1.00 31.70 O
ATOM 11 C2' G B2016 44.219 111.028 104.496 1.00 28.12 C
ATOM 12 O2' G B2016 43.447 111.181 103.337 1.00 30.64 O
ATOM 13 C1' G B2016 43.565 111.880 105.577 1.00 30.04 C
ATOM 14 N9 G B2016 44.518 112.486 106.504 1.00 33.06 N
ATOM 15 C8 G B2016 45.016 111.939 107.662 1.00 34.64 C
ATOM 16 N7 G B2016 45.887 112.708 108.258 1.00 35.58 N
ATOM 17 C5 G B2016 45.969 113.831 107.447 1.00 34.09 C
ATOM 18 C6 G B2016 46.771 114.989 107.567 1.00 34.89 C
ATOM 19 O6 G B2016 47.632 115.245 108.419 1.00 36.21 O
ATOM 20 N1 G B2016 46.509 115.898 106.547 1.00 33.03 N
ATOM 21 C2 G B2016 45.608 115.706 105.532 1.00 31.70 C
ATOM 22 N2 G B2016 45.468 116.711 104.663 1.00 31.96 N
ATOM 23 N3 G B2016 44.890 114.614 105.384 1.00 31.40 N
ATOM 24 C4 G B2016 45.115 113.723 106.373 1.00 32.83 C
ATOM 25 P C B2017 45.420 107.633 104.018 1.00 33.86 P
ATOM 26 OP1 C B2017 45.113 106.612 103.004 1.00 34.01 O
ATOM 27 OP2 C B2017 45.844 107.209 105.367 1.00 32.60 O
ATOM 28 O5' C B2017 46.537 108.585 103.417 1.00 32.30 O
TER
Atoms:
C2: (49.200,105.544,111.675)
OP1: (47.005,100.072,109.991)
OP2: (47.771,98.086,111.426)
C4: (47.621,105.504,109.974)
O5': (48.195,100.463,112.122)
C3': (49.546,102.117,114.087)
C1': (50.393,103.451,112.329)
O4': (50.449,102.097,111.920)
C5': (49.460,100.037,112.627)
P: (47.238,99.472,111.330)
O2: (49.858,106.150,112.533)
C4': (50.247,101.237,113.066)
C2': (50.197,103.471,113.845)
O2': (51.482,103.545,114.421)
N1: (49.366,104.150,111.527)
N3: (48.323,106.186,110.879)
N4: (46.791,106.188,109.179)
C6: (48.606,103.462,110.624)
C5: (47.740,104.093,109.833)
O3': (49.827,101.651,115.404)
OP1: (47.005,100.072,109.991)
OP2: (47.771,98.086,111.426)
C4: (47.621,105.504,109.974)
O5': (48.195,100.463,112.122)
C3': (49.546,102.117,114.087)
C1': (50.393,103.451,112.329)
O4': (50.449,102.097,111.920)
C5': (49.460,100.037,112.627)
P: (47.238,99.472,111.330)
O2: (49.858,106.150,112.533)
C4': (50.247,101.237,113.066)
C2': (50.197,103.471,113.845)
O2': (51.482,103.545,114.421)
N1: (49.366,104.150,111.527)
N3: (48.323,106.186,110.879)
N4: (46.791,106.188,109.179)
C6: (48.606,103.462,110.624)
C5: (47.740,104.093,109.833)
O3': (49.827,101.651,115.404)
OP1: (43.280,106.884,109.148)
OP2: (44.930,108.630,110.040)
C3': (44.122,109.639,105.108)
C1': (43.565,111.880,105.577)
C5': (42.641,108.729,106.966)
O6: (47.632,115.245,108.419)
O4': (42.685,111.044,106.304)
C8: (45.016,111.939,107.662)
C2: (45.608,115.706,105.532)
C6: (46.771,114.989,107.567)
C5: (45.969,113.831,107.447)
C4: (45.115,113.723,106.373)
P: (43.653,108.301,109.368)
C4': (42.777,109.684,105.806)
C2': (44.219,111.028,104.496)
O2': (43.447,111.181,103.337)
N1: (46.509,115.898,106.547)
N2: (45.468,116.711,104.663)
N3: (44.890,114.614,105.384)
N7: (45.887,112.708,108.258)
N9: (44.518,112.486,106.504)
O5': (43.636,109.032,107.958)
O3': (44.138,108.594,104.142)
OP2: (44.930,108.630,110.040)
C3': (44.122,109.639,105.108)
C1': (43.565,111.880,105.577)
C5': (42.641,108.729,106.966)
O6: (47.632,115.245,108.419)
O4': (42.685,111.044,106.304)
C8: (45.016,111.939,107.662)
C2: (45.608,115.706,105.532)
C6: (46.771,114.989,107.567)
C5: (45.969,113.831,107.447)
C4: (45.115,113.723,106.373)
P: (43.653,108.301,109.368)
C4': (42.777,109.684,105.806)
C2': (44.219,111.028,104.496)
O2': (43.447,111.181,103.337)
N1: (46.509,115.898,106.547)
N2: (45.468,116.711,104.663)
N3: (44.890,114.614,105.384)
N7: (45.887,112.708,108.258)
N9: (44.518,112.486,106.504)
O5': (43.636,109.032,107.958)
O3': (44.138,108.594,104.142)
Image (generated by PyMOL):