Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01086:02016
Extra
PDB:
ATOM 1 O3' C A1085 45.671 99.356 111.833 1.00 46.83 O
ATOM 2 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C A1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C A1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C A1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C A1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C A1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C A1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C A1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C A1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C A1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C A1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C A1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C A1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C A1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C A1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C A1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
TER
ATOM 1 O3' U B2015 42.386 108.780 109.860 1.00 34.73 O
ATOM 2 P G B2016 43.594 108.075 109.071 1.00 35.35 P
ATOM 3 OP1 G B2016 43.253 106.637 108.939 1.00 35.60 O
ATOM 4 OP2 G B2016 44.875 108.463 109.717 1.00 33.36 O
ATOM 5 O5' G B2016 43.563 108.758 107.633 1.00 33.49 O
ATOM 6 C5' G B2016 42.506 108.511 106.700 1.00 29.80 C
ATOM 7 C4' G B2016 42.609 109.480 105.549 1.00 31.42 C
ATOM 8 O4' G B2016 42.521 110.837 106.064 1.00 31.88 O
ATOM 9 C3' G B2016 43.925 109.461 104.793 1.00 31.13 C
ATOM 10 O3' G B2016 43.946 108.424 103.813 1.00 33.39 O
ATOM 11 C2' G B2016 43.958 110.852 104.177 1.00 30.55 C
ATOM 12 O2' G B2016 43.135 110.972 103.041 1.00 29.03 O
ATOM 13 C1' G B2016 43.356 111.695 105.302 1.00 32.12 C
ATOM 14 N9 G B2016 44.362 112.278 106.191 1.00 34.71 N
ATOM 15 C8 G B2016 44.905 111.700 107.313 1.00 34.65 C
ATOM 16 N7 G B2016 45.801 112.449 107.894 1.00 35.21 N
ATOM 17 C5 G B2016 45.859 113.594 107.110 1.00 34.40 C
ATOM 18 C6 G B2016 46.666 114.751 107.236 1.00 35.08 C
ATOM 19 O6 G B2016 47.531 115.002 108.089 1.00 36.76 O
ATOM 20 N1 G B2016 46.397 115.672 106.232 1.00 34.21 N
ATOM 21 C2 G B2016 45.478 115.502 105.233 1.00 33.60 C
ATOM 22 N2 G B2016 45.354 116.517 104.371 1.00 34.54 N
ATOM 23 N3 G B2016 44.732 114.424 105.093 1.00 33.57 N
ATOM 24 C4 G B2016 44.971 113.515 106.062 1.00 34.14 C
ATOM 25 P C B2017 45.245 107.481 103.664 1.00 35.09 P
ATOM 26 OP1 C B2017 44.869 106.382 102.750 1.00 34.21 O
ATOM 27 OP2 C B2017 45.749 107.160 105.027 1.00 33.85 O
ATOM 28 O5' C B2017 46.307 108.398 102.910 1.00 34.95 O
TER
ATOM 2 P C A1086 47.099 99.203 111.093 1.00 48.27 P
ATOM 3 OP1 C A1086 46.983 99.737 109.715 1.00 48.36 O
ATOM 4 OP2 C A1086 47.594 97.813 111.296 1.00 47.35 O
ATOM 5 O5' C A1086 48.037 100.207 111.888 1.00 46.14 O
ATOM 6 C5' C A1086 49.373 99.852 112.238 1.00 45.90 C
ATOM 7 C4' C A1086 50.121 101.081 112.667 1.00 45.84 C
ATOM 8 O4' C A1086 50.308 101.940 111.521 1.00 44.41 O
ATOM 9 C3' C A1086 49.395 101.940 113.686 1.00 44.93 C
ATOM 10 O3' C A1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 11 C2' C A1086 50.004 103.313 113.442 1.00 44.48 C
ATOM 12 O2' C A1086 51.258 103.436 114.083 1.00 42.97 O
ATOM 13 C1' C A1086 50.209 103.295 111.921 1.00 43.83 C
ATOM 14 N1 C A1086 49.160 103.943 111.101 1.00 43.24 N
ATOM 15 C2 C A1086 48.941 105.327 111.222 1.00 42.24 C
ATOM 16 O2 C A1086 49.617 105.982 112.027 1.00 41.79 O
ATOM 17 N3 C A1086 47.999 105.910 110.453 1.00 42.65 N
ATOM 18 C4 C A1086 47.292 105.178 109.589 1.00 43.93 C
ATOM 19 N4 C A1086 46.374 105.803 108.837 1.00 45.42 N
ATOM 20 C5 C A1086 47.489 103.775 109.451 1.00 42.24 C
ATOM 21 C6 C A1086 48.417 103.205 110.220 1.00 42.32 C
ATOM 22 P U A1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 23 OP1 U A1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 24 OP2 U A1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 25 O5' U A1087 47.508 102.398 115.912 1.00 47.41 O
TER
ATOM 1 O3' U B2015 42.386 108.780 109.860 1.00 34.73 O
ATOM 2 P G B2016 43.594 108.075 109.071 1.00 35.35 P
ATOM 3 OP1 G B2016 43.253 106.637 108.939 1.00 35.60 O
ATOM 4 OP2 G B2016 44.875 108.463 109.717 1.00 33.36 O
ATOM 5 O5' G B2016 43.563 108.758 107.633 1.00 33.49 O
ATOM 6 C5' G B2016 42.506 108.511 106.700 1.00 29.80 C
ATOM 7 C4' G B2016 42.609 109.480 105.549 1.00 31.42 C
ATOM 8 O4' G B2016 42.521 110.837 106.064 1.00 31.88 O
ATOM 9 C3' G B2016 43.925 109.461 104.793 1.00 31.13 C
ATOM 10 O3' G B2016 43.946 108.424 103.813 1.00 33.39 O
ATOM 11 C2' G B2016 43.958 110.852 104.177 1.00 30.55 C
ATOM 12 O2' G B2016 43.135 110.972 103.041 1.00 29.03 O
ATOM 13 C1' G B2016 43.356 111.695 105.302 1.00 32.12 C
ATOM 14 N9 G B2016 44.362 112.278 106.191 1.00 34.71 N
ATOM 15 C8 G B2016 44.905 111.700 107.313 1.00 34.65 C
ATOM 16 N7 G B2016 45.801 112.449 107.894 1.00 35.21 N
ATOM 17 C5 G B2016 45.859 113.594 107.110 1.00 34.40 C
ATOM 18 C6 G B2016 46.666 114.751 107.236 1.00 35.08 C
ATOM 19 O6 G B2016 47.531 115.002 108.089 1.00 36.76 O
ATOM 20 N1 G B2016 46.397 115.672 106.232 1.00 34.21 N
ATOM 21 C2 G B2016 45.478 115.502 105.233 1.00 33.60 C
ATOM 22 N2 G B2016 45.354 116.517 104.371 1.00 34.54 N
ATOM 23 N3 G B2016 44.732 114.424 105.093 1.00 33.57 N
ATOM 24 C4 G B2016 44.971 113.515 106.062 1.00 34.14 C
ATOM 25 P C B2017 45.245 107.481 103.664 1.00 35.09 P
ATOM 26 OP1 C B2017 44.869 106.382 102.750 1.00 34.21 O
ATOM 27 OP2 C B2017 45.749 107.160 105.027 1.00 33.85 O
ATOM 28 O5' C B2017 46.307 108.398 102.910 1.00 34.95 O
TER
Atoms:
C2: (48.941,105.327,111.222)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
OP1: (46.983,99.737,109.715)
OP2: (47.594,97.813,111.296)
C4: (47.292,105.178,109.589)
O5': (48.037,100.207,111.888)
C3': (49.395,101.940,113.686)
C1': (50.209,103.295,111.921)
O4': (50.308,101.940,111.521)
C5': (49.373,99.852,112.238)
P: (47.099,99.203,111.093)
O2: (49.617,105.982,112.027)
C4': (50.121,101.081,112.667)
C2': (50.004,103.313,113.442)
O2': (51.258,103.436,114.083)
N1: (49.160,103.943,111.101)
N3: (47.999,105.910,110.453)
N4: (46.374,105.803,108.837)
C6: (48.417,103.205,110.220)
C5: (47.489,103.775,109.451)
O3': (49.670,101.478,115.007)
OP1: (43.253,106.637,108.939)
OP2: (44.875,108.463,109.717)
C3': (43.925,109.461,104.793)
C1': (43.356,111.695,105.302)
C5': (42.506,108.511,106.700)
O6: (47.531,115.002,108.089)
O4': (42.521,110.837,106.064)
C8: (44.905,111.700,107.313)
C2: (45.478,115.502,105.233)
C6: (46.666,114.751,107.236)
C5: (45.859,113.594,107.110)
C4: (44.971,113.515,106.062)
P: (43.594,108.075,109.071)
C4': (42.609,109.480,105.549)
C2': (43.958,110.852,104.177)
O2': (43.135,110.972,103.041)
N1: (46.397,115.672,106.232)
N2: (45.354,116.517,104.371)
N3: (44.732,114.424,105.093)
N7: (45.801,112.449,107.894)
N9: (44.362,112.278,106.191)
O5': (43.563,108.758,107.633)
O3': (43.946,108.424,103.813)
OP2: (44.875,108.463,109.717)
C3': (43.925,109.461,104.793)
C1': (43.356,111.695,105.302)
C5': (42.506,108.511,106.700)
O6: (47.531,115.002,108.089)
O4': (42.521,110.837,106.064)
C8: (44.905,111.700,107.313)
C2: (45.478,115.502,105.233)
C6: (46.666,114.751,107.236)
C5: (45.859,113.594,107.110)
C4: (44.971,113.515,106.062)
P: (43.594,108.075,109.071)
C4': (42.609,109.480,105.549)
C2': (43.958,110.852,104.177)
O2': (43.135,110.972,103.041)
N1: (46.397,115.672,106.232)
N2: (45.354,116.517,104.371)
N3: (44.732,114.424,105.093)
N7: (45.801,112.449,107.894)
N9: (44.362,112.278,106.191)
O5': (43.563,108.758,107.633)
O3': (43.946,108.424,103.813)
Image (generated by PyMOL):