Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0426:0427
Extra
PDB:
ATOM 1 O3' A A 425 53.228 112.724 23.957 1.00 44.49 O
ATOM 2 P C A 426 53.461 113.880 25.042 1.00 44.33 P
ATOM 3 OP1 C A 426 52.150 114.168 25.684 1.00 44.18 O
ATOM 4 OP2 C A 426 54.212 114.982 24.399 1.00 45.44 O
ATOM 5 O5' C A 426 54.436 113.191 26.095 1.00 43.26 O
ATOM 6 C5' C A 426 53.984 112.105 26.914 1.00 41.38 C
ATOM 7 C4' C A 426 54.874 111.958 28.123 1.00 43.15 C
ATOM 8 O4' C A 426 56.151 111.377 27.733 1.00 44.43 O
ATOM 9 C3' C A 426 55.204 113.246 28.868 1.00 42.90 C
ATOM 10 O3' C A 426 55.277 112.978 30.254 1.00 43.24 O
ATOM 11 C2' C A 426 56.590 113.598 28.339 1.00 43.35 C
ATOM 12 O2' C A 426 57.347 114.365 29.251 1.00 45.13 O
ATOM 13 C1' C A 426 57.204 112.211 28.169 1.00 42.30 C
ATOM 14 N1 C A 426 58.294 112.131 27.183 1.00 40.76 N
ATOM 15 C2 C A 426 59.529 111.614 27.589 1.00 40.16 C
ATOM 16 O2 C A 426 59.688 111.290 28.773 1.00 39.65 O
ATOM 17 N3 C A 426 60.524 111.490 26.683 1.00 39.93 N
ATOM 18 C4 C A 426 60.335 111.885 25.426 1.00 39.06 C
ATOM 19 N4 C A 426 61.347 111.747 24.577 1.00 37.92 N
ATOM 20 C5 C A 426 59.097 112.440 24.987 1.00 40.02 C
ATOM 21 C6 C A 426 58.111 112.541 25.889 1.00 40.39 C
ATOM 22 P A A 427 54.547 113.962 31.283 1.00 44.11 P
ATOM 23 OP1 A A 427 53.912 113.091 32.304 1.00 46.99 O
ATOM 24 OP2 A A 427 53.713 114.918 30.520 1.00 42.63 O
ATOM 25 O5' A A 427 55.748 114.767 31.953 1.00 43.64 O
TER
ATOM 1 O3' C B 426 55.277 112.978 30.254 1.00 43.24 O
ATOM 2 P A B 427 54.547 113.962 31.283 1.00 44.11 P
ATOM 3 OP1 A B 427 53.912 113.091 32.304 1.00 46.99 O
ATOM 4 OP2 A B 427 53.713 114.918 30.520 1.00 42.63 O
ATOM 5 O5' A B 427 55.748 114.767 31.953 1.00 43.64 O
ATOM 6 C5' A B 427 56.648 114.130 32.881 1.00 40.70 C
ATOM 7 C4' A B 427 57.633 115.137 33.432 1.00 40.78 C
ATOM 8 O4' A B 427 58.546 115.570 32.386 1.00 42.44 O
ATOM 9 C3' A B 427 57.019 116.425 33.942 1.00 39.35 C
ATOM 10 O3' A B 427 56.516 116.273 35.251 1.00 38.39 O
ATOM 11 C2' A B 427 58.187 117.397 33.855 1.00 40.47 C
ATOM 12 O2' A B 427 59.121 117.249 34.902 1.00 40.91 O
ATOM 13 C1' A B 427 58.842 116.951 32.548 1.00 42.18 C
ATOM 14 N9 A B 427 58.301 117.677 31.396 1.00 44.87 N
ATOM 15 C8 A B 427 57.317 117.266 30.524 1.00 44.83 C
ATOM 16 N7 A B 427 57.023 118.152 29.602 1.00 45.02 N
ATOM 17 C5 A B 427 57.871 119.214 29.880 1.00 44.57 C
ATOM 18 C6 A B 427 58.053 120.458 29.263 1.00 43.19 C
ATOM 19 N6 A B 427 57.358 120.866 28.204 1.00 41.69 N
ATOM 20 N1 A B 427 58.987 121.281 29.778 1.00 44.69 N
ATOM 21 C2 A B 427 59.684 120.872 30.844 1.00 44.96 C
ATOM 22 N3 A B 427 59.605 119.730 31.514 1.00 44.20 N
ATOM 23 C4 A B 427 58.669 118.934 30.977 1.00 44.51 C
ATOM 24 P C B 428 55.304 117.201 35.747 1.00 40.15 P
ATOM 25 OP1 C B 428 54.994 116.781 37.141 1.00 40.88 O
ATOM 26 OP2 C B 428 54.236 117.197 34.721 1.00 39.50 O
ATOM 27 O5' C B 428 55.916 118.670 35.804 1.00 41.69 O
TER
ATOM 2 P C A 426 53.461 113.880 25.042 1.00 44.33 P
ATOM 3 OP1 C A 426 52.150 114.168 25.684 1.00 44.18 O
ATOM 4 OP2 C A 426 54.212 114.982 24.399 1.00 45.44 O
ATOM 5 O5' C A 426 54.436 113.191 26.095 1.00 43.26 O
ATOM 6 C5' C A 426 53.984 112.105 26.914 1.00 41.38 C
ATOM 7 C4' C A 426 54.874 111.958 28.123 1.00 43.15 C
ATOM 8 O4' C A 426 56.151 111.377 27.733 1.00 44.43 O
ATOM 9 C3' C A 426 55.204 113.246 28.868 1.00 42.90 C
ATOM 10 O3' C A 426 55.277 112.978 30.254 1.00 43.24 O
ATOM 11 C2' C A 426 56.590 113.598 28.339 1.00 43.35 C
ATOM 12 O2' C A 426 57.347 114.365 29.251 1.00 45.13 O
ATOM 13 C1' C A 426 57.204 112.211 28.169 1.00 42.30 C
ATOM 14 N1 C A 426 58.294 112.131 27.183 1.00 40.76 N
ATOM 15 C2 C A 426 59.529 111.614 27.589 1.00 40.16 C
ATOM 16 O2 C A 426 59.688 111.290 28.773 1.00 39.65 O
ATOM 17 N3 C A 426 60.524 111.490 26.683 1.00 39.93 N
ATOM 18 C4 C A 426 60.335 111.885 25.426 1.00 39.06 C
ATOM 19 N4 C A 426 61.347 111.747 24.577 1.00 37.92 N
ATOM 20 C5 C A 426 59.097 112.440 24.987 1.00 40.02 C
ATOM 21 C6 C A 426 58.111 112.541 25.889 1.00 40.39 C
ATOM 22 P A A 427 54.547 113.962 31.283 1.00 44.11 P
ATOM 23 OP1 A A 427 53.912 113.091 32.304 1.00 46.99 O
ATOM 24 OP2 A A 427 53.713 114.918 30.520 1.00 42.63 O
ATOM 25 O5' A A 427 55.748 114.767 31.953 1.00 43.64 O
TER
ATOM 1 O3' C B 426 55.277 112.978 30.254 1.00 43.24 O
ATOM 2 P A B 427 54.547 113.962 31.283 1.00 44.11 P
ATOM 3 OP1 A B 427 53.912 113.091 32.304 1.00 46.99 O
ATOM 4 OP2 A B 427 53.713 114.918 30.520 1.00 42.63 O
ATOM 5 O5' A B 427 55.748 114.767 31.953 1.00 43.64 O
ATOM 6 C5' A B 427 56.648 114.130 32.881 1.00 40.70 C
ATOM 7 C4' A B 427 57.633 115.137 33.432 1.00 40.78 C
ATOM 8 O4' A B 427 58.546 115.570 32.386 1.00 42.44 O
ATOM 9 C3' A B 427 57.019 116.425 33.942 1.00 39.35 C
ATOM 10 O3' A B 427 56.516 116.273 35.251 1.00 38.39 O
ATOM 11 C2' A B 427 58.187 117.397 33.855 1.00 40.47 C
ATOM 12 O2' A B 427 59.121 117.249 34.902 1.00 40.91 O
ATOM 13 C1' A B 427 58.842 116.951 32.548 1.00 42.18 C
ATOM 14 N9 A B 427 58.301 117.677 31.396 1.00 44.87 N
ATOM 15 C8 A B 427 57.317 117.266 30.524 1.00 44.83 C
ATOM 16 N7 A B 427 57.023 118.152 29.602 1.00 45.02 N
ATOM 17 C5 A B 427 57.871 119.214 29.880 1.00 44.57 C
ATOM 18 C6 A B 427 58.053 120.458 29.263 1.00 43.19 C
ATOM 19 N6 A B 427 57.358 120.866 28.204 1.00 41.69 N
ATOM 20 N1 A B 427 58.987 121.281 29.778 1.00 44.69 N
ATOM 21 C2 A B 427 59.684 120.872 30.844 1.00 44.96 C
ATOM 22 N3 A B 427 59.605 119.730 31.514 1.00 44.20 N
ATOM 23 C4 A B 427 58.669 118.934 30.977 1.00 44.51 C
ATOM 24 P C B 428 55.304 117.201 35.747 1.00 40.15 P
ATOM 25 OP1 C B 428 54.994 116.781 37.141 1.00 40.88 O
ATOM 26 OP2 C B 428 54.236 117.197 34.721 1.00 39.50 O
ATOM 27 O5' C B 428 55.916 118.670 35.804 1.00 41.69 O
TER
Atoms:
C2: (59.529,111.614,27.589)
OP1: (52.150,114.168,25.684)
OP2: (54.212,114.982,24.399)
C4: (60.335,111.885,25.426)
O5': (54.436,113.191,26.095)
C3': (55.204,113.246,28.868)
C1': (57.204,112.211,28.169)
O4': (56.151,111.377,27.733)
C5': (53.984,112.105,26.914)
P: (53.461,113.880,25.042)
O2: (59.688,111.290,28.773)
C4': (54.874,111.958,28.123)
C2': (56.590,113.598,28.339)
O2': (57.347,114.365,29.251)
N1: (58.294,112.131,27.183)
N3: (60.524,111.490,26.683)
N4: (61.347,111.747,24.577)
C6: (58.111,112.541,25.889)
C5: (59.097,112.440,24.987)
O3': (55.277,112.978,30.254)
OP1: (52.150,114.168,25.684)
OP2: (54.212,114.982,24.399)
C4: (60.335,111.885,25.426)
O5': (54.436,113.191,26.095)
C3': (55.204,113.246,28.868)
C1': (57.204,112.211,28.169)
O4': (56.151,111.377,27.733)
C5': (53.984,112.105,26.914)
P: (53.461,113.880,25.042)
O2: (59.688,111.290,28.773)
C4': (54.874,111.958,28.123)
C2': (56.590,113.598,28.339)
O2': (57.347,114.365,29.251)
N1: (58.294,112.131,27.183)
N3: (60.524,111.490,26.683)
N4: (61.347,111.747,24.577)
C6: (58.111,112.541,25.889)
C5: (59.097,112.440,24.987)
O3': (55.277,112.978,30.254)
OP1: (53.912,113.091,32.304)
OP2: (53.713,114.918,30.520)
C3': (57.019,116.425,33.942)
C1': (58.842,116.951,32.548)
C5': (56.648,114.130,32.881)
O4': (58.546,115.570,32.386)
C8: (57.317,117.266,30.524)
O2': (59.121,117.249,34.902)
C6: (58.053,120.458,29.263)
C5: (57.871,119.214,29.880)
C4: (58.669,118.934,30.977)
P: (54.547,113.962,31.283)
C4': (57.633,115.137,33.432)
C2': (58.187,117.397,33.855)
C2: (59.684,120.872,30.844)
N1: (58.987,121.281,29.778)
N3: (59.605,119.730,31.514)
N6: (57.358,120.866,28.204)
N7: (57.023,118.152,29.602)
N9: (58.301,117.677,31.396)
O5': (55.748,114.767,31.953)
O3': (56.516,116.273,35.251)
OP2: (53.713,114.918,30.520)
C3': (57.019,116.425,33.942)
C1': (58.842,116.951,32.548)
C5': (56.648,114.130,32.881)
O4': (58.546,115.570,32.386)
C8: (57.317,117.266,30.524)
O2': (59.121,117.249,34.902)
C6: (58.053,120.458,29.263)
C5: (57.871,119.214,29.880)
C4: (58.669,118.934,30.977)
P: (54.547,113.962,31.283)
C4': (57.633,115.137,33.432)
C2': (58.187,117.397,33.855)
C2: (59.684,120.872,30.844)
N1: (58.987,121.281,29.778)
N3: (59.605,119.730,31.514)
N6: (57.358,120.866,28.204)
N7: (57.023,118.152,29.602)
N9: (58.301,117.677,31.396)
O5': (55.748,114.767,31.953)
O3': (56.516,116.273,35.251)
Image (generated by PyMOL):