Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0426:0427
Extra
PDB:
ATOM 1 O3' A A 425 53.614 112.748 24.285 1.00 59.97 O
ATOM 2 P C A 426 53.748 113.983 25.301 1.00 60.33 P
ATOM 3 OP1 C A 426 52.402 114.236 25.886 1.00 59.16 O
ATOM 4 OP2 C A 426 54.455 115.080 24.593 1.00 60.08 O
ATOM 5 O5' C A 426 54.731 113.415 26.419 1.00 59.40 O
ATOM 6 C5' C A 426 54.362 112.287 27.231 1.00 57.08 C
ATOM 7 C4' C A 426 55.290 112.174 28.422 1.00 57.44 C
ATOM 8 O4' C A 426 56.563 111.597 28.011 1.00 57.62 O
ATOM 9 C3' C A 426 55.620 113.482 29.131 1.00 56.28 C
ATOM 10 O3' C A 426 55.671 113.286 30.534 1.00 54.62 O
ATOM 11 C2' C A 426 56.995 113.836 28.565 1.00 55.69 C
ATOM 12 O2' C A 426 57.761 114.644 29.431 1.00 55.53 O
ATOM 13 C1' C A 426 57.625 112.454 28.384 1.00 55.98 C
ATOM 14 N1 C A 426 58.650 112.386 27.323 1.00 56.05 N
ATOM 15 C2 C A 426 59.898 111.800 27.602 1.00 55.99 C
ATOM 16 O2 C A 426 60.127 111.368 28.738 1.00 55.99 O
ATOM 17 N3 C A 426 60.826 111.725 26.619 1.00 55.79 N
ATOM 18 C4 C A 426 60.558 112.217 25.408 1.00 55.47 C
ATOM 19 N4 C A 426 61.501 112.137 24.477 1.00 55.00 N
ATOM 20 C5 C A 426 59.308 112.819 25.100 1.00 57.15 C
ATOM 21 C6 C A 426 58.391 112.881 26.076 1.00 57.25 C
ATOM 22 P A A 427 54.875 114.294 31.503 1.00 55.58 P
ATOM 23 OP1 A A 427 54.157 113.455 32.491 1.00 56.04 O
ATOM 24 OP2 A A 427 54.109 115.267 30.677 1.00 53.14 O
ATOM 25 O5' A A 427 56.036 115.075 32.270 1.00 55.10 O
TER
ATOM 1 O3' C B 426 55.671 113.286 30.534 1.00 54.62 O
ATOM 2 P A B 427 54.875 114.294 31.503 1.00 55.58 P
ATOM 3 OP1 A B 427 54.157 113.455 32.491 1.00 56.04 O
ATOM 4 OP2 A B 427 54.109 115.267 30.677 1.00 53.14 O
ATOM 5 O5' A B 427 56.036 115.075 32.270 1.00 55.10 O
ATOM 6 C5' A B 427 56.949 114.376 33.151 1.00 53.00 C
ATOM 7 C4' A B 427 57.968 115.335 33.727 1.00 52.47 C
ATOM 8 O4' A B 427 58.926 115.729 32.707 1.00 53.93 O
ATOM 9 C3' A B 427 57.410 116.648 34.239 1.00 51.61 C
ATOM 10 O3' A B 427 56.861 116.526 35.537 1.00 51.06 O
ATOM 11 C2' A B 427 58.628 117.557 34.182 1.00 52.77 C
ATOM 12 O2' A B 427 59.536 117.338 35.240 1.00 53.24 O
ATOM 13 C1' A B 427 59.273 117.098 32.874 1.00 53.63 C
ATOM 14 N9 A B 427 58.739 117.843 31.733 1.00 55.63 N
ATOM 15 C8 A B 427 57.739 117.446 30.875 1.00 56.76 C
ATOM 16 N7 A B 427 57.440 118.338 29.963 1.00 57.22 N
ATOM 17 C5 A B 427 58.308 119.386 30.227 1.00 54.94 C
ATOM 18 C6 A B 427 58.498 120.617 29.606 1.00 54.13 C
ATOM 19 N6 A B 427 57.804 121.022 28.545 1.00 54.14 N
ATOM 20 N1 A B 427 59.442 121.432 30.110 1.00 54.25 N
ATOM 21 C2 A B 427 60.143 121.021 31.165 1.00 53.66 C
ATOM 22 N3 A B 427 60.063 119.883 31.834 1.00 54.16 N
ATOM 23 C4 A B 427 59.114 119.096 31.310 1.00 54.95 C
ATOM 24 P C B 428 55.657 117.494 35.980 1.00 52.53 P
ATOM 25 OP1 C B 428 55.288 117.135 37.374 1.00 51.62 O
ATOM 26 OP2 C B 428 54.619 117.487 34.917 1.00 54.46 O
ATOM 27 O5' C B 428 56.301 118.951 35.993 1.00 54.91 O
TER
ATOM 2 P C A 426 53.748 113.983 25.301 1.00 60.33 P
ATOM 3 OP1 C A 426 52.402 114.236 25.886 1.00 59.16 O
ATOM 4 OP2 C A 426 54.455 115.080 24.593 1.00 60.08 O
ATOM 5 O5' C A 426 54.731 113.415 26.419 1.00 59.40 O
ATOM 6 C5' C A 426 54.362 112.287 27.231 1.00 57.08 C
ATOM 7 C4' C A 426 55.290 112.174 28.422 1.00 57.44 C
ATOM 8 O4' C A 426 56.563 111.597 28.011 1.00 57.62 O
ATOM 9 C3' C A 426 55.620 113.482 29.131 1.00 56.28 C
ATOM 10 O3' C A 426 55.671 113.286 30.534 1.00 54.62 O
ATOM 11 C2' C A 426 56.995 113.836 28.565 1.00 55.69 C
ATOM 12 O2' C A 426 57.761 114.644 29.431 1.00 55.53 O
ATOM 13 C1' C A 426 57.625 112.454 28.384 1.00 55.98 C
ATOM 14 N1 C A 426 58.650 112.386 27.323 1.00 56.05 N
ATOM 15 C2 C A 426 59.898 111.800 27.602 1.00 55.99 C
ATOM 16 O2 C A 426 60.127 111.368 28.738 1.00 55.99 O
ATOM 17 N3 C A 426 60.826 111.725 26.619 1.00 55.79 N
ATOM 18 C4 C A 426 60.558 112.217 25.408 1.00 55.47 C
ATOM 19 N4 C A 426 61.501 112.137 24.477 1.00 55.00 N
ATOM 20 C5 C A 426 59.308 112.819 25.100 1.00 57.15 C
ATOM 21 C6 C A 426 58.391 112.881 26.076 1.00 57.25 C
ATOM 22 P A A 427 54.875 114.294 31.503 1.00 55.58 P
ATOM 23 OP1 A A 427 54.157 113.455 32.491 1.00 56.04 O
ATOM 24 OP2 A A 427 54.109 115.267 30.677 1.00 53.14 O
ATOM 25 O5' A A 427 56.036 115.075 32.270 1.00 55.10 O
TER
ATOM 1 O3' C B 426 55.671 113.286 30.534 1.00 54.62 O
ATOM 2 P A B 427 54.875 114.294 31.503 1.00 55.58 P
ATOM 3 OP1 A B 427 54.157 113.455 32.491 1.00 56.04 O
ATOM 4 OP2 A B 427 54.109 115.267 30.677 1.00 53.14 O
ATOM 5 O5' A B 427 56.036 115.075 32.270 1.00 55.10 O
ATOM 6 C5' A B 427 56.949 114.376 33.151 1.00 53.00 C
ATOM 7 C4' A B 427 57.968 115.335 33.727 1.00 52.47 C
ATOM 8 O4' A B 427 58.926 115.729 32.707 1.00 53.93 O
ATOM 9 C3' A B 427 57.410 116.648 34.239 1.00 51.61 C
ATOM 10 O3' A B 427 56.861 116.526 35.537 1.00 51.06 O
ATOM 11 C2' A B 427 58.628 117.557 34.182 1.00 52.77 C
ATOM 12 O2' A B 427 59.536 117.338 35.240 1.00 53.24 O
ATOM 13 C1' A B 427 59.273 117.098 32.874 1.00 53.63 C
ATOM 14 N9 A B 427 58.739 117.843 31.733 1.00 55.63 N
ATOM 15 C8 A B 427 57.739 117.446 30.875 1.00 56.76 C
ATOM 16 N7 A B 427 57.440 118.338 29.963 1.00 57.22 N
ATOM 17 C5 A B 427 58.308 119.386 30.227 1.00 54.94 C
ATOM 18 C6 A B 427 58.498 120.617 29.606 1.00 54.13 C
ATOM 19 N6 A B 427 57.804 121.022 28.545 1.00 54.14 N
ATOM 20 N1 A B 427 59.442 121.432 30.110 1.00 54.25 N
ATOM 21 C2 A B 427 60.143 121.021 31.165 1.00 53.66 C
ATOM 22 N3 A B 427 60.063 119.883 31.834 1.00 54.16 N
ATOM 23 C4 A B 427 59.114 119.096 31.310 1.00 54.95 C
ATOM 24 P C B 428 55.657 117.494 35.980 1.00 52.53 P
ATOM 25 OP1 C B 428 55.288 117.135 37.374 1.00 51.62 O
ATOM 26 OP2 C B 428 54.619 117.487 34.917 1.00 54.46 O
ATOM 27 O5' C B 428 56.301 118.951 35.993 1.00 54.91 O
TER
Atoms:
C2: (59.898,111.800,27.602)
OP1: (52.402,114.236,25.886)
OP2: (54.455,115.080,24.593)
C4: (60.558,112.217,25.408)
O5': (54.731,113.415,26.419)
C3': (55.620,113.482,29.131)
C1': (57.625,112.454,28.384)
O4': (56.563,111.597,28.011)
C5': (54.362,112.287,27.231)
P: (53.748,113.983,25.301)
O2: (60.127,111.368,28.738)
C4': (55.290,112.174,28.422)
C2': (56.995,113.836,28.565)
O2': (57.761,114.644,29.431)
N1: (58.650,112.386,27.323)
N3: (60.826,111.725,26.619)
N4: (61.501,112.137,24.477)
C6: (58.391,112.881,26.076)
C5: (59.308,112.819,25.100)
O3': (55.671,113.286,30.534)
OP1: (52.402,114.236,25.886)
OP2: (54.455,115.080,24.593)
C4: (60.558,112.217,25.408)
O5': (54.731,113.415,26.419)
C3': (55.620,113.482,29.131)
C1': (57.625,112.454,28.384)
O4': (56.563,111.597,28.011)
C5': (54.362,112.287,27.231)
P: (53.748,113.983,25.301)
O2: (60.127,111.368,28.738)
C4': (55.290,112.174,28.422)
C2': (56.995,113.836,28.565)
O2': (57.761,114.644,29.431)
N1: (58.650,112.386,27.323)
N3: (60.826,111.725,26.619)
N4: (61.501,112.137,24.477)
C6: (58.391,112.881,26.076)
C5: (59.308,112.819,25.100)
O3': (55.671,113.286,30.534)
OP1: (54.157,113.455,32.491)
OP2: (54.109,115.267,30.677)
C3': (57.410,116.648,34.239)
C1': (59.273,117.098,32.874)
C5': (56.949,114.376,33.151)
O4': (58.926,115.729,32.707)
C8: (57.739,117.446,30.875)
O2': (59.536,117.338,35.240)
C6: (58.498,120.617,29.606)
C5: (58.308,119.386,30.227)
C4: (59.114,119.096,31.310)
P: (54.875,114.294,31.503)
C4': (57.968,115.335,33.727)
C2': (58.628,117.557,34.182)
C2: (60.143,121.021,31.165)
N1: (59.442,121.432,30.110)
N3: (60.063,119.883,31.834)
N6: (57.804,121.022,28.545)
N7: (57.440,118.338,29.963)
N9: (58.739,117.843,31.733)
O5': (56.036,115.075,32.270)
O3': (56.861,116.526,35.537)
OP2: (54.109,115.267,30.677)
C3': (57.410,116.648,34.239)
C1': (59.273,117.098,32.874)
C5': (56.949,114.376,33.151)
O4': (58.926,115.729,32.707)
C8: (57.739,117.446,30.875)
O2': (59.536,117.338,35.240)
C6: (58.498,120.617,29.606)
C5: (58.308,119.386,30.227)
C4: (59.114,119.096,31.310)
P: (54.875,114.294,31.503)
C4': (57.968,115.335,33.727)
C2': (58.628,117.557,34.182)
C2: (60.143,121.021,31.165)
N1: (59.442,121.432,30.110)
N3: (60.063,119.883,31.834)
N6: (57.804,121.022,28.545)
N7: (57.440,118.338,29.963)
N9: (58.739,117.843,31.733)
O5': (56.036,115.075,32.270)
O3': (56.861,116.526,35.537)
Image (generated by PyMOL):