Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12566:12570
Extra
PDB:
ATOM 1 O3' A A2565 42.164 -8.065 75.238 1.00 41.33 O
ATOM 2 P G A2566 42.495 -6.968 74.115 1.00 34.17 P
ATOM 3 OP1 G A2566 43.956 -6.654 74.245 1.00 34.20 O
ATOM 4 OP2 G A2566 41.533 -5.876 74.238 1.00 34.20 O
ATOM 5 O5' G A2566 42.245 -7.799 72.779 1.00 34.10 O
ATOM 6 C5' G A2566 41.438 -7.333 71.713 1.00 34.05 C
ATOM 7 C4' G A2566 40.933 -8.512 70.936 1.00 34.02 C
ATOM 8 O4' G A2566 39.859 -9.149 71.666 1.00 34.05 O
ATOM 9 C3' G A2566 40.353 -8.246 69.571 1.00 33.98 C
ATOM 10 O3' G A2566 41.338 -8.160 68.579 1.00 33.96 O
ATOM 11 C2' G A2566 39.432 -9.438 69.379 1.00 33.99 C
ATOM 12 O2' G A2566 40.167 -10.593 69.076 1.00 33.98 O
ATOM 13 C1' G A2566 38.884 -9.617 70.771 1.00 34.03 C
ATOM 14 N9 G A2566 37.670 -8.828 70.937 1.00 34.05 N
ATOM 15 C8 G A2566 37.493 -7.732 71.699 1.00 34.09 C
ATOM 16 N7 G A2566 36.308 -7.283 71.521 1.00 34.12 N
ATOM 17 C5 G A2566 35.706 -8.099 70.607 1.00 34.09 C
ATOM 18 C6 G A2566 34.408 -8.057 70.096 1.00 34.12 C
ATOM 19 O6 G A2566 33.574 -7.190 70.406 1.00 34.17 O
ATOM 20 N1 G A2566 34.156 -9.104 69.203 1.00 34.11 N
ATOM 21 C2 G A2566 35.095 -10.051 68.863 1.00 34.07 C
ATOM 22 N2 G A2566 34.718 -11.000 67.998 1.00 34.08 N
ATOM 23 N3 G A2566 36.328 -10.095 69.353 1.00 34.05 N
ATOM 24 C4 G A2566 36.547 -9.080 70.218 1.00 34.06 C
ATOM 25 P G A2567 41.223 -7.091 67.386 1.00 36.61 P
ATOM 26 OP1 G A2567 42.556 -7.013 66.773 1.00 36.60 O
ATOM 27 OP2 G A2567 40.631 -5.849 67.938 1.00 36.64 O
ATOM 28 O5' G A2567 40.205 -7.777 66.398 1.00 36.60 O
TER
ATOM 1 O3' A B2569 34.836 -13.314 58.898 1.00 35.58 O
ATOM 2 P U B2570 34.118 -12.670 57.597 1.00 39.78 P
ATOM 3 OP1 U B2570 34.703 -13.376 56.429 1.00 39.84 O
ATOM 4 OP2 U B2570 34.220 -11.187 57.670 1.00 39.74 O
ATOM 5 O5' U B2570 32.589 -13.052 57.742 1.00 39.85 O
ATOM 6 C5' U B2570 31.923 -12.871 58.959 1.00 39.81 C
ATOM 7 C4' U B2570 30.867 -11.790 58.956 1.00 39.85 C
ATOM 8 O4' U B2570 30.393 -11.759 60.299 1.00 39.81 O
ATOM 9 C3' U B2570 31.371 -10.369 58.746 1.00 39.81 C
ATOM 10 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 11 C2' U B2570 32.129 -10.178 60.060 1.00 39.71 C
ATOM 12 O2' U B2570 32.415 -8.838 60.390 1.00 39.68 O
ATOM 13 C1' U B2570 31.159 -10.819 61.049 1.00 39.73 C
ATOM 14 N1 U B2570 31.825 -11.547 62.146 1.00 39.67 N
ATOM 15 C2 U B2570 31.644 -11.064 63.399 1.00 39.64 C
ATOM 16 O2 U B2570 30.995 -10.104 63.612 1.00 39.66 O
ATOM 17 N3 U B2570 32.314 -11.704 64.390 1.00 39.59 N
ATOM 18 C4 U B2570 33.159 -12.809 64.249 1.00 39.58 C
ATOM 19 O4 U B2570 33.689 -13.315 65.266 1.00 39.56 O
ATOM 20 C5 U B2570 33.298 -13.282 62.895 1.00 39.61 C
ATOM 21 C6 U B2570 32.641 -12.640 61.943 1.00 39.65 C
ATOM 22 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 23 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 24 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 25 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
TER
ATOM 2 P G A2566 42.495 -6.968 74.115 1.00 34.17 P
ATOM 3 OP1 G A2566 43.956 -6.654 74.245 1.00 34.20 O
ATOM 4 OP2 G A2566 41.533 -5.876 74.238 1.00 34.20 O
ATOM 5 O5' G A2566 42.245 -7.799 72.779 1.00 34.10 O
ATOM 6 C5' G A2566 41.438 -7.333 71.713 1.00 34.05 C
ATOM 7 C4' G A2566 40.933 -8.512 70.936 1.00 34.02 C
ATOM 8 O4' G A2566 39.859 -9.149 71.666 1.00 34.05 O
ATOM 9 C3' G A2566 40.353 -8.246 69.571 1.00 33.98 C
ATOM 10 O3' G A2566 41.338 -8.160 68.579 1.00 33.96 O
ATOM 11 C2' G A2566 39.432 -9.438 69.379 1.00 33.99 C
ATOM 12 O2' G A2566 40.167 -10.593 69.076 1.00 33.98 O
ATOM 13 C1' G A2566 38.884 -9.617 70.771 1.00 34.03 C
ATOM 14 N9 G A2566 37.670 -8.828 70.937 1.00 34.05 N
ATOM 15 C8 G A2566 37.493 -7.732 71.699 1.00 34.09 C
ATOM 16 N7 G A2566 36.308 -7.283 71.521 1.00 34.12 N
ATOM 17 C5 G A2566 35.706 -8.099 70.607 1.00 34.09 C
ATOM 18 C6 G A2566 34.408 -8.057 70.096 1.00 34.12 C
ATOM 19 O6 G A2566 33.574 -7.190 70.406 1.00 34.17 O
ATOM 20 N1 G A2566 34.156 -9.104 69.203 1.00 34.11 N
ATOM 21 C2 G A2566 35.095 -10.051 68.863 1.00 34.07 C
ATOM 22 N2 G A2566 34.718 -11.000 67.998 1.00 34.08 N
ATOM 23 N3 G A2566 36.328 -10.095 69.353 1.00 34.05 N
ATOM 24 C4 G A2566 36.547 -9.080 70.218 1.00 34.06 C
ATOM 25 P G A2567 41.223 -7.091 67.386 1.00 36.61 P
ATOM 26 OP1 G A2567 42.556 -7.013 66.773 1.00 36.60 O
ATOM 27 OP2 G A2567 40.631 -5.849 67.938 1.00 36.64 O
ATOM 28 O5' G A2567 40.205 -7.777 66.398 1.00 36.60 O
TER
ATOM 1 O3' A B2569 34.836 -13.314 58.898 1.00 35.58 O
ATOM 2 P U B2570 34.118 -12.670 57.597 1.00 39.78 P
ATOM 3 OP1 U B2570 34.703 -13.376 56.429 1.00 39.84 O
ATOM 4 OP2 U B2570 34.220 -11.187 57.670 1.00 39.74 O
ATOM 5 O5' U B2570 32.589 -13.052 57.742 1.00 39.85 O
ATOM 6 C5' U B2570 31.923 -12.871 58.959 1.00 39.81 C
ATOM 7 C4' U B2570 30.867 -11.790 58.956 1.00 39.85 C
ATOM 8 O4' U B2570 30.393 -11.759 60.299 1.00 39.81 O
ATOM 9 C3' U B2570 31.371 -10.369 58.746 1.00 39.81 C
ATOM 10 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 11 C2' U B2570 32.129 -10.178 60.060 1.00 39.71 C
ATOM 12 O2' U B2570 32.415 -8.838 60.390 1.00 39.68 O
ATOM 13 C1' U B2570 31.159 -10.819 61.049 1.00 39.73 C
ATOM 14 N1 U B2570 31.825 -11.547 62.146 1.00 39.67 N
ATOM 15 C2 U B2570 31.644 -11.064 63.399 1.00 39.64 C
ATOM 16 O2 U B2570 30.995 -10.104 63.612 1.00 39.66 O
ATOM 17 N3 U B2570 32.314 -11.704 64.390 1.00 39.59 N
ATOM 18 C4 U B2570 33.159 -12.809 64.249 1.00 39.58 C
ATOM 19 O4 U B2570 33.689 -13.315 65.266 1.00 39.56 O
ATOM 20 C5 U B2570 33.298 -13.282 62.895 1.00 39.61 C
ATOM 21 C6 U B2570 32.641 -12.640 61.943 1.00 39.65 C
ATOM 22 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 23 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 24 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 25 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
TER
Atoms:
OP1: (43.956,-6.654,74.245)
OP2: (41.533,-5.876,74.238)
C3': (40.353,-8.246,69.571)
C1': (38.884,-9.617,70.771)
C5': (41.438,-7.333,71.713)
O6: (33.574,-7.190,70.406)
O4': (39.859,-9.149,71.666)
C8: (37.493,-7.732,71.699)
C2: (35.095,-10.051,68.863)
C6: (34.408,-8.057,70.096)
C5: (35.706,-8.099,70.607)
C4: (36.547,-9.080,70.218)
P: (42.495,-6.968,74.115)
C4': (40.933,-8.512,70.936)
C2': (39.432,-9.438,69.379)
O2': (40.167,-10.593,69.076)
N1: (34.156,-9.104,69.203)
N2: (34.718,-11.000,67.998)
N3: (36.328,-10.095,69.353)
N7: (36.308,-7.283,71.521)
N9: (37.670,-8.828,70.937)
O5': (42.245,-7.799,72.779)
O3': (41.338,-8.160,68.579)
OP2: (41.533,-5.876,74.238)
C3': (40.353,-8.246,69.571)
C1': (38.884,-9.617,70.771)
C5': (41.438,-7.333,71.713)
O6: (33.574,-7.190,70.406)
O4': (39.859,-9.149,71.666)
C8: (37.493,-7.732,71.699)
C2: (35.095,-10.051,68.863)
C6: (34.408,-8.057,70.096)
C5: (35.706,-8.099,70.607)
C4: (36.547,-9.080,70.218)
P: (42.495,-6.968,74.115)
C4': (40.933,-8.512,70.936)
C2': (39.432,-9.438,69.379)
O2': (40.167,-10.593,69.076)
N1: (34.156,-9.104,69.203)
N2: (34.718,-11.000,67.998)
N3: (36.328,-10.095,69.353)
N7: (36.308,-7.283,71.521)
N9: (37.670,-8.828,70.937)
O5': (42.245,-7.799,72.779)
O3': (41.338,-8.160,68.579)
C4: (33.159,-12.809,64.249)
N3: (32.314,-11.704,64.390)
OP1: (34.703,-13.376,56.429)
OP2: (34.220,-11.187,57.670)
C2: (31.644,-11.064,63.399)
C1': (31.159,-10.819,61.049)
C3': (31.371,-10.369,58.746)
O5': (32.589,-13.052,57.742)
O4': (30.393,-11.759,60.299)
C5': (31.923,-12.871,58.959)
P: (34.118,-12.670,57.597)
C4': (30.867,-11.790,58.956)
C2': (32.129,-10.178,60.060)
O2': (32.415,-8.838,60.390)
N1: (31.825,-11.547,62.146)
O4: (33.689,-13.315,65.266)
O2: (30.995,-10.104,63.612)
C6: (32.641,-12.640,61.943)
C5: (33.298,-13.282,62.895)
O3': (30.244,-9.431,58.715)
N3: (32.314,-11.704,64.390)
OP1: (34.703,-13.376,56.429)
OP2: (34.220,-11.187,57.670)
C2: (31.644,-11.064,63.399)
C1': (31.159,-10.819,61.049)
C3': (31.371,-10.369,58.746)
O5': (32.589,-13.052,57.742)
O4': (30.393,-11.759,60.299)
C5': (31.923,-12.871,58.959)
P: (34.118,-12.670,57.597)
C4': (30.867,-11.790,58.956)
C2': (32.129,-10.178,60.060)
O2': (32.415,-8.838,60.390)
N1: (31.825,-11.547,62.146)
O4: (33.689,-13.315,65.266)
O2: (30.995,-10.104,63.612)
C6: (32.641,-12.640,61.943)
C5: (33.298,-13.282,62.895)
O3': (30.244,-9.431,58.715)
Image (generated by PyMOL):