Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:911:912
Extra
PDB:
ATOM 1 O3' A A 10 54.194 40.535 107.911 1.00 51.05 O
ATOM 2 P C A 11 53.260 41.753 108.379 1.00 53.59 P
ATOM 3 OP1 C A 11 52.442 42.164 107.209 1.00 53.50 O
ATOM 4 OP2 C A 11 54.121 42.752 109.070 1.00 51.52 O
ATOM 5 O5' C A 11 52.274 41.101 109.445 1.00 53.36 O
ATOM 6 C5' C A 11 52.661 40.955 110.822 1.00 53.31 C
ATOM 7 C4' C A 11 52.199 39.622 111.358 1.00 52.70 C
ATOM 8 O4' C A 11 50.745 39.554 111.305 1.00 53.68 O
ATOM 9 C3' C A 11 52.704 38.395 110.608 1.00 52.00 C
ATOM 10 O3' C A 11 52.864 37.344 111.547 1.00 52.71 O
ATOM 11 C2' C A 11 51.547 38.091 109.661 1.00 52.46 C
ATOM 12 O2' C A 11 51.482 36.749 109.236 1.00 52.68 O
ATOM 13 C1' C A 11 50.351 38.429 110.545 1.00 53.79 C
ATOM 14 N1 C A 11 49.125 38.768 109.809 1.00 56.30 N
ATOM 15 C2 C A 11 48.019 37.917 109.910 1.00 58.98 C
ATOM 16 O2 C A 11 48.104 36.895 110.609 1.00 61.16 O
ATOM 17 N3 C A 11 46.883 38.228 109.244 1.00 60.13 N
ATOM 18 C4 C A 11 46.828 39.335 108.502 1.00 59.37 C
ATOM 19 N4 C A 11 45.687 39.606 107.871 1.00 60.58 N
ATOM 20 C5 C A 11 47.939 40.214 108.377 1.00 58.70 C
ATOM 21 C6 C A 11 49.056 39.896 109.041 1.00 57.67 C
ATOM 22 P A A 12 54.333 36.847 111.945 1.00 53.56 P
ATOM 23 OP1 A A 12 54.190 35.834 113.015 1.00 55.25 O
ATOM 24 OP2 A A 12 55.185 38.039 112.189 1.00 54.80 O
ATOM 25 O5' A A 12 54.837 36.123 110.622 1.00 52.70 O
TER
ATOM 1 O3' C B 11 52.864 37.344 111.547 1.00 52.71 O
ATOM 2 P A B 12 54.333 36.847 111.945 1.00 53.56 P
ATOM 3 OP1 A B 12 54.190 35.834 113.015 1.00 55.25 O
ATOM 4 OP2 A B 12 55.185 38.039 112.189 1.00 54.80 O
ATOM 5 O5' A B 12 54.837 36.123 110.622 1.00 52.70 O
ATOM 6 C5' A B 12 54.753 34.702 110.484 1.00 50.91 C
ATOM 7 C4' A B 12 55.475 34.260 109.237 1.00 50.64 C
ATOM 8 O4' A B 12 54.696 34.643 108.069 1.00 49.75 O
ATOM 9 C3' A B 12 56.870 34.847 109.031 1.00 49.41 C
ATOM 10 O3' A B 12 57.686 33.876 108.383 1.00 48.84 O
ATOM 11 C2' A B 12 56.587 35.995 108.065 1.00 50.46 C
ATOM 12 O2' A B 12 57.676 36.394 107.261 1.00 50.60 O
ATOM 13 C1' A B 12 55.521 35.362 107.182 1.00 50.79 C
ATOM 14 N9 A B 12 54.718 36.331 106.439 1.00 50.56 N
ATOM 15 C8 A B 12 53.619 37.045 106.845 1.00 49.22 C
ATOM 16 N7 A B 12 53.147 37.852 105.927 1.00 48.25 N
ATOM 17 C5 A B 12 53.989 37.653 104.844 1.00 48.83 C
ATOM 18 C6 A B 12 54.021 38.213 103.560 1.00 48.86 C
ATOM 19 N6 A B 12 53.158 39.136 103.141 1.00 49.57 N
ATOM 20 N1 A B 12 54.984 37.790 102.712 1.00 49.79 N
ATOM 21 C2 A B 12 55.858 36.870 103.143 1.00 50.77 C
ATOM 22 N3 A B 12 55.935 36.273 104.331 1.00 50.42 N
ATOM 23 C4 A B 12 54.958 36.714 105.143 1.00 49.83 C
ATOM 24 P G B 13 59.025 33.343 109.095 1.00 49.30 P
ATOM 25 OP1 G B 13 59.462 32.162 108.317 1.00 48.60 O
ATOM 26 OP2 G B 13 58.778 33.213 110.552 1.00 48.78 O
ATOM 27 O5' G B 13 60.109 34.495 108.863 1.00 51.18 O
TER
ATOM 2 P C A 11 53.260 41.753 108.379 1.00 53.59 P
ATOM 3 OP1 C A 11 52.442 42.164 107.209 1.00 53.50 O
ATOM 4 OP2 C A 11 54.121 42.752 109.070 1.00 51.52 O
ATOM 5 O5' C A 11 52.274 41.101 109.445 1.00 53.36 O
ATOM 6 C5' C A 11 52.661 40.955 110.822 1.00 53.31 C
ATOM 7 C4' C A 11 52.199 39.622 111.358 1.00 52.70 C
ATOM 8 O4' C A 11 50.745 39.554 111.305 1.00 53.68 O
ATOM 9 C3' C A 11 52.704 38.395 110.608 1.00 52.00 C
ATOM 10 O3' C A 11 52.864 37.344 111.547 1.00 52.71 O
ATOM 11 C2' C A 11 51.547 38.091 109.661 1.00 52.46 C
ATOM 12 O2' C A 11 51.482 36.749 109.236 1.00 52.68 O
ATOM 13 C1' C A 11 50.351 38.429 110.545 1.00 53.79 C
ATOM 14 N1 C A 11 49.125 38.768 109.809 1.00 56.30 N
ATOM 15 C2 C A 11 48.019 37.917 109.910 1.00 58.98 C
ATOM 16 O2 C A 11 48.104 36.895 110.609 1.00 61.16 O
ATOM 17 N3 C A 11 46.883 38.228 109.244 1.00 60.13 N
ATOM 18 C4 C A 11 46.828 39.335 108.502 1.00 59.37 C
ATOM 19 N4 C A 11 45.687 39.606 107.871 1.00 60.58 N
ATOM 20 C5 C A 11 47.939 40.214 108.377 1.00 58.70 C
ATOM 21 C6 C A 11 49.056 39.896 109.041 1.00 57.67 C
ATOM 22 P A A 12 54.333 36.847 111.945 1.00 53.56 P
ATOM 23 OP1 A A 12 54.190 35.834 113.015 1.00 55.25 O
ATOM 24 OP2 A A 12 55.185 38.039 112.189 1.00 54.80 O
ATOM 25 O5' A A 12 54.837 36.123 110.622 1.00 52.70 O
TER
ATOM 1 O3' C B 11 52.864 37.344 111.547 1.00 52.71 O
ATOM 2 P A B 12 54.333 36.847 111.945 1.00 53.56 P
ATOM 3 OP1 A B 12 54.190 35.834 113.015 1.00 55.25 O
ATOM 4 OP2 A B 12 55.185 38.039 112.189 1.00 54.80 O
ATOM 5 O5' A B 12 54.837 36.123 110.622 1.00 52.70 O
ATOM 6 C5' A B 12 54.753 34.702 110.484 1.00 50.91 C
ATOM 7 C4' A B 12 55.475 34.260 109.237 1.00 50.64 C
ATOM 8 O4' A B 12 54.696 34.643 108.069 1.00 49.75 O
ATOM 9 C3' A B 12 56.870 34.847 109.031 1.00 49.41 C
ATOM 10 O3' A B 12 57.686 33.876 108.383 1.00 48.84 O
ATOM 11 C2' A B 12 56.587 35.995 108.065 1.00 50.46 C
ATOM 12 O2' A B 12 57.676 36.394 107.261 1.00 50.60 O
ATOM 13 C1' A B 12 55.521 35.362 107.182 1.00 50.79 C
ATOM 14 N9 A B 12 54.718 36.331 106.439 1.00 50.56 N
ATOM 15 C8 A B 12 53.619 37.045 106.845 1.00 49.22 C
ATOM 16 N7 A B 12 53.147 37.852 105.927 1.00 48.25 N
ATOM 17 C5 A B 12 53.989 37.653 104.844 1.00 48.83 C
ATOM 18 C6 A B 12 54.021 38.213 103.560 1.00 48.86 C
ATOM 19 N6 A B 12 53.158 39.136 103.141 1.00 49.57 N
ATOM 20 N1 A B 12 54.984 37.790 102.712 1.00 49.79 N
ATOM 21 C2 A B 12 55.858 36.870 103.143 1.00 50.77 C
ATOM 22 N3 A B 12 55.935 36.273 104.331 1.00 50.42 N
ATOM 23 C4 A B 12 54.958 36.714 105.143 1.00 49.83 C
ATOM 24 P G B 13 59.025 33.343 109.095 1.00 49.30 P
ATOM 25 OP1 G B 13 59.462 32.162 108.317 1.00 48.60 O
ATOM 26 OP2 G B 13 58.778 33.213 110.552 1.00 48.78 O
ATOM 27 O5' G B 13 60.109 34.495 108.863 1.00 51.18 O
TER
Atoms:
C2: (48.019,37.917,109.910)
OP1: (52.442,42.164,107.209)
OP2: (54.121,42.752,109.070)
C4: (46.828,39.335,108.502)
O5': (52.274,41.101,109.445)
C3': (52.704,38.395,110.608)
C1': (50.351,38.429,110.545)
O4': (50.745,39.554,111.305)
C5': (52.661,40.955,110.822)
P: (53.260,41.753,108.379)
O2: (48.104,36.895,110.609)
C4': (52.199,39.622,111.358)
C2': (51.547,38.091,109.661)
O2': (51.482,36.749,109.236)
N1: (49.125,38.768,109.809)
N3: (46.883,38.228,109.244)
N4: (45.687,39.606,107.871)
C6: (49.056,39.896,109.041)
C5: (47.939,40.214,108.377)
O3': (52.864,37.344,111.547)
OP1: (52.442,42.164,107.209)
OP2: (54.121,42.752,109.070)
C4: (46.828,39.335,108.502)
O5': (52.274,41.101,109.445)
C3': (52.704,38.395,110.608)
C1': (50.351,38.429,110.545)
O4': (50.745,39.554,111.305)
C5': (52.661,40.955,110.822)
P: (53.260,41.753,108.379)
O2: (48.104,36.895,110.609)
C4': (52.199,39.622,111.358)
C2': (51.547,38.091,109.661)
O2': (51.482,36.749,109.236)
N1: (49.125,38.768,109.809)
N3: (46.883,38.228,109.244)
N4: (45.687,39.606,107.871)
C6: (49.056,39.896,109.041)
C5: (47.939,40.214,108.377)
O3': (52.864,37.344,111.547)
OP1: (54.190,35.834,113.015)
OP2: (55.185,38.039,112.189)
C3': (56.870,34.847,109.031)
C1': (55.521,35.362,107.182)
C5': (54.753,34.702,110.484)
O4': (54.696,34.643,108.069)
C8: (53.619,37.045,106.845)
O2': (57.676,36.394,107.261)
C6: (54.021,38.213,103.560)
C5: (53.989,37.653,104.844)
C4: (54.958,36.714,105.143)
P: (54.333,36.847,111.945)
C4': (55.475,34.260,109.237)
C2': (56.587,35.995,108.065)
C2: (55.858,36.870,103.143)
N1: (54.984,37.790,102.712)
N3: (55.935,36.273,104.331)
N6: (53.158,39.136,103.141)
N7: (53.147,37.852,105.927)
N9: (54.718,36.331,106.439)
O5': (54.837,36.123,110.622)
O3': (57.686,33.876,108.383)
OP2: (55.185,38.039,112.189)
C3': (56.870,34.847,109.031)
C1': (55.521,35.362,107.182)
C5': (54.753,34.702,110.484)
O4': (54.696,34.643,108.069)
C8: (53.619,37.045,106.845)
O2': (57.676,36.394,107.261)
C6: (54.021,38.213,103.560)
C5: (53.989,37.653,104.844)
C4: (54.958,36.714,105.143)
P: (54.333,36.847,111.945)
C4': (55.475,34.260,109.237)
C2': (56.587,35.995,108.065)
C2: (55.858,36.870,103.143)
N1: (54.984,37.790,102.712)
N3: (55.935,36.273,104.331)
N6: (53.158,39.136,103.141)
N7: (53.147,37.852,105.927)
N9: (54.718,36.331,106.439)
O5': (54.837,36.123,110.622)
O3': (57.686,33.876,108.383)
Image (generated by PyMOL):