Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12872:12860
Extra
PDB:
ATOM 1 O3' U A2871 16.689 18.968 -2.179 1.00 62.74 O
ATOM 2 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C A2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C A2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C A2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C A2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C A2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C A2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C A2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C A2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C A2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C A2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C A2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C A2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C A2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C A2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C A2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C A2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 1 O3' U B2859 13.775 21.865 9.620 1.00 50.73 O
ATOM 2 P G B2860 13.864 21.471 8.070 1.00 54.76 P
ATOM 3 OP1 G B2860 12.757 20.525 7.804 1.00 54.89 O
ATOM 4 OP2 G B2860 15.247 21.018 7.806 1.00 54.52 O
ATOM 5 O5' G B2860 13.602 22.867 7.340 1.00 55.34 O
ATOM 6 C5' G B2860 12.381 23.578 7.535 1.00 55.63 C
ATOM 7 C4' G B2860 12.400 24.955 6.888 1.00 56.14 C
ATOM 8 O4' G B2860 13.368 25.805 7.556 1.00 55.88 O
ATOM 9 C3' G B2860 12.818 25.025 5.425 1.00 56.64 C
ATOM 10 O3' G B2860 11.799 24.679 4.527 1.00 57.12 O
ATOM 11 C2' G B2860 13.261 26.457 5.285 1.00 56.91 C
ATOM 12 O2' G B2860 12.130 27.297 5.231 1.00 57.33 O
ATOM 13 C1' G B2860 13.966 26.675 6.619 1.00 56.30 C
ATOM 14 N9 G B2860 15.407 26.348 6.552 1.00 56.00 N
ATOM 15 C8 G B2860 15.958 25.140 6.938 1.00 55.50 C
ATOM 16 N7 G B2860 17.257 25.123 6.829 1.00 55.31 N
ATOM 17 C5 G B2860 17.609 26.381 6.336 1.00 55.70 C
ATOM 18 C6 G B2860 18.869 26.927 5.996 1.00 55.73 C
ATOM 19 O6 G B2860 20.006 26.419 6.047 1.00 55.42 O
ATOM 20 N1 G B2860 18.752 28.219 5.545 1.00 56.20 N
ATOM 21 C2 G B2860 17.614 28.921 5.419 1.00 56.60 C
ATOM 22 N2 G B2860 17.759 30.157 4.983 1.00 57.02 N
ATOM 23 N3 G B2860 16.427 28.445 5.704 1.00 56.59 N
ATOM 24 C4 G B2860 16.486 27.159 6.163 1.00 56.12 C
ATOM 25 P G B2861 12.198 24.208 3.061 1.00 52.15 P
ATOM 26 OP1 G B2861 10.968 23.898 2.334 1.00 52.64 O
ATOM 27 OP2 G B2861 13.147 23.159 3.216 1.00 51.70 O
ATOM 28 O5' G B2861 12.884 25.513 2.461 1.00 52.52 O
TER
ATOM 2 P C A2872 16.154 20.462 -2.233 1.00 56.24 P
ATOM 3 OP1 C A2872 14.862 20.516 -1.493 1.00 56.16 O
ATOM 4 OP2 C A2872 16.189 20.864 -3.629 1.00 56.92 O
ATOM 5 O5' C A2872 17.253 21.243 -1.434 1.00 55.83 O
ATOM 6 C5' C A2872 18.525 21.435 -1.980 1.00 55.88 C
ATOM 7 C4' C A2872 19.518 21.630 -0.898 1.00 55.28 C
ATOM 8 O4' C A2872 19.007 22.584 0.055 1.00 55.13 O
ATOM 9 C3' C A2872 19.834 20.404 -0.074 1.00 54.66 C
ATOM 10 O3' C A2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 11 C2' C A2872 20.356 21.030 1.217 1.00 54.15 C
ATOM 12 O2' C A2872 21.687 21.467 1.046 1.00 54.09 O
ATOM 13 C1' C A2872 19.496 22.286 1.327 1.00 54.47 C
ATOM 14 N1 C A2872 18.359 22.141 2.246 1.00 54.25 N
ATOM 15 C2 C A2872 18.584 21.997 3.621 1.00 53.63 C
ATOM 16 O2 C A2872 19.729 21.937 4.087 1.00 53.25 O
ATOM 17 N3 C A2872 17.534 21.921 4.447 1.00 53.47 N
ATOM 18 C4 C A2872 16.287 22.005 3.946 1.00 53.90 C
ATOM 19 N4 C A2872 15.262 21.919 4.818 1.00 53.72 N
ATOM 20 C5 C A2872 16.059 22.171 2.547 1.00 54.54 C
ATOM 21 C6 C A2872 17.108 22.257 1.743 1.00 54.69 C
ATOM 22 P U A2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 23 OP1 U A2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 24 OP2 U A2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 25 O5' U A2873 21.791 17.661 0.532 1.00 51.50 O
TER
ATOM 1 O3' U B2859 13.775 21.865 9.620 1.00 50.73 O
ATOM 2 P G B2860 13.864 21.471 8.070 1.00 54.76 P
ATOM 3 OP1 G B2860 12.757 20.525 7.804 1.00 54.89 O
ATOM 4 OP2 G B2860 15.247 21.018 7.806 1.00 54.52 O
ATOM 5 O5' G B2860 13.602 22.867 7.340 1.00 55.34 O
ATOM 6 C5' G B2860 12.381 23.578 7.535 1.00 55.63 C
ATOM 7 C4' G B2860 12.400 24.955 6.888 1.00 56.14 C
ATOM 8 O4' G B2860 13.368 25.805 7.556 1.00 55.88 O
ATOM 9 C3' G B2860 12.818 25.025 5.425 1.00 56.64 C
ATOM 10 O3' G B2860 11.799 24.679 4.527 1.00 57.12 O
ATOM 11 C2' G B2860 13.261 26.457 5.285 1.00 56.91 C
ATOM 12 O2' G B2860 12.130 27.297 5.231 1.00 57.33 O
ATOM 13 C1' G B2860 13.966 26.675 6.619 1.00 56.30 C
ATOM 14 N9 G B2860 15.407 26.348 6.552 1.00 56.00 N
ATOM 15 C8 G B2860 15.958 25.140 6.938 1.00 55.50 C
ATOM 16 N7 G B2860 17.257 25.123 6.829 1.00 55.31 N
ATOM 17 C5 G B2860 17.609 26.381 6.336 1.00 55.70 C
ATOM 18 C6 G B2860 18.869 26.927 5.996 1.00 55.73 C
ATOM 19 O6 G B2860 20.006 26.419 6.047 1.00 55.42 O
ATOM 20 N1 G B2860 18.752 28.219 5.545 1.00 56.20 N
ATOM 21 C2 G B2860 17.614 28.921 5.419 1.00 56.60 C
ATOM 22 N2 G B2860 17.759 30.157 4.983 1.00 57.02 N
ATOM 23 N3 G B2860 16.427 28.445 5.704 1.00 56.59 N
ATOM 24 C4 G B2860 16.486 27.159 6.163 1.00 56.12 C
ATOM 25 P G B2861 12.198 24.208 3.061 1.00 52.15 P
ATOM 26 OP1 G B2861 10.968 23.898 2.334 1.00 52.64 O
ATOM 27 OP2 G B2861 13.147 23.159 3.216 1.00 51.70 O
ATOM 28 O5' G B2861 12.884 25.513 2.461 1.00 52.52 O
TER
Atoms:
C2: (18.584,21.997,3.621)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (14.862,20.516,-1.493)
OP2: (16.189,20.864,-3.629)
C4: (16.287,22.005,3.946)
O5': (17.253,21.243,-1.434)
C3': (19.834,20.404,-0.074)
C1': (19.496,22.286,1.327)
O4': (19.007,22.584,0.055)
C5': (18.525,21.435,-1.980)
P: (16.154,20.462,-2.233)
O2: (19.729,21.937,4.087)
C4': (19.518,21.630,-0.898)
C2': (20.356,21.030,1.217)
O2': (21.687,21.467,1.046)
N1: (18.359,22.141,2.246)
N3: (17.534,21.921,4.447)
N4: (15.262,21.919,4.818)
C6: (17.108,22.257,1.743)
C5: (16.059,22.171,2.547)
O3': (20.779,19.566,-0.733)
OP1: (12.757,20.525,7.804)
OP2: (15.247,21.018,7.806)
C3': (12.818,25.025,5.425)
C1': (13.966,26.675,6.619)
C5': (12.381,23.578,7.535)
O6: (20.006,26.419,6.047)
O4': (13.368,25.805,7.556)
C8: (15.958,25.140,6.938)
C2: (17.614,28.921,5.419)
C6: (18.869,26.927,5.996)
C5: (17.609,26.381,6.336)
C4: (16.486,27.159,6.163)
P: (13.864,21.471,8.070)
C4': (12.400,24.955,6.888)
C2': (13.261,26.457,5.285)
O2': (12.130,27.297,5.231)
N1: (18.752,28.219,5.545)
N2: (17.759,30.157,4.983)
N3: (16.427,28.445,5.704)
N7: (17.257,25.123,6.829)
N9: (15.407,26.348,6.552)
O5': (13.602,22.867,7.340)
O3': (11.799,24.679,4.527)
OP2: (15.247,21.018,7.806)
C3': (12.818,25.025,5.425)
C1': (13.966,26.675,6.619)
C5': (12.381,23.578,7.535)
O6: (20.006,26.419,6.047)
O4': (13.368,25.805,7.556)
C8: (15.958,25.140,6.938)
C2: (17.614,28.921,5.419)
C6: (18.869,26.927,5.996)
C5: (17.609,26.381,6.336)
C4: (16.486,27.159,6.163)
P: (13.864,21.471,8.070)
C4': (12.400,24.955,6.888)
C2': (13.261,26.457,5.285)
O2': (12.130,27.297,5.231)
N1: (18.752,28.219,5.545)
N2: (17.759,30.157,4.983)
N3: (16.427,28.445,5.704)
N7: (17.257,25.123,6.829)
N9: (15.407,26.348,6.552)
O5': (13.602,22.867,7.340)
O3': (11.799,24.679,4.527)
Image (generated by PyMOL):