Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:921:925
Extra
PDB:
ATOM 1 O3' G A 20 58.347 8.892 111.964 1.00 89.28 O
ATOM 2 P G A 21 59.467 7.749 112.103 1.00 90.27 P
ATOM 3 OP1 G A 21 59.187 6.990 113.347 1.00 89.80 O
ATOM 4 OP2 G A 21 60.807 8.371 111.913 1.00 89.77 O
ATOM 5 O5' G A 21 59.152 6.810 110.855 1.00 91.92 O
ATOM 6 C5' G A 21 60.211 6.243 110.076 1.00 95.69 C
ATOM 7 C4' G A 21 60.040 6.593 108.617 1.00 98.78 C
ATOM 8 O4' G A 21 59.749 8.003 108.465 1.00 97.35 O
ATOM 9 C3' G A 21 61.304 6.355 107.815 1.00102.57 C
ATOM 10 O3' G A 21 61.327 5.003 107.366 1.00111.34 O
ATOM 11 C2' G A 21 61.193 7.360 106.676 1.00100.01 C
ATOM 12 O2' G A 21 60.405 6.872 105.611 1.00100.38 O
ATOM 13 C1' G A 21 60.473 8.527 107.363 1.00 97.14 C
ATOM 14 N9 G A 21 61.312 9.618 107.859 1.00 94.83 N
ATOM 15 C8 G A 21 61.932 9.688 109.086 1.00 93.99 C
ATOM 16 N7 G A 21 62.548 10.822 109.287 1.00 92.25 N
ATOM 17 C5 G A 21 62.339 11.541 108.118 1.00 91.47 C
ATOM 18 C6 G A 21 62.754 12.848 107.759 1.00 89.95 C
ATOM 19 O6 G A 21 63.398 13.664 108.428 1.00 89.78 O
ATOM 20 N1 G A 21 62.337 13.181 106.478 1.00 88.92 N
ATOM 21 C2 G A 21 61.609 12.370 105.650 1.00 89.26 C
ATOM 22 N2 G A 21 61.312 12.875 104.451 1.00 88.87 N
ATOM 23 N3 G A 21 61.203 11.154 105.973 1.00 90.49 N
ATOM 24 C4 G A 21 61.599 10.805 107.215 1.00 92.49 C
ATOM 25 P U A 22 62.409 3.982 107.969 1.00117.26 P
ATOM 26 OP1 U A 22 62.511 4.240 109.432 1.00117.10 O
ATOM 27 OP2 U A 22 63.627 4.070 107.121 1.00117.50 O
ATOM 28 O5' U A 22 61.759 2.537 107.777 1.00120.68 O
TER
ATOM 1 O3' G B 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 2 P C B 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 3 OP1 C B 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 4 OP2 C B 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 5 O5' C B 25 60.674 8.663 96.598 1.00 87.18 O
ATOM 6 C5' C B 25 59.628 9.373 95.918 1.00 82.60 C
ATOM 7 C4' C B 25 59.374 10.704 96.582 1.00 79.44 C
ATOM 8 O4' C B 25 58.743 10.515 97.874 1.00 79.13 O
ATOM 9 C3' C B 25 60.595 11.542 96.907 1.00 77.45 C
ATOM 10 O3' C B 25 61.087 12.210 95.757 1.00 75.14 O
ATOM 11 C2' C B 25 60.038 12.511 97.939 1.00 78.25 C
ATOM 12 O2' C B 25 59.285 13.559 97.356 1.00 78.93 O
ATOM 13 C1' C B 25 59.093 11.597 98.727 1.00 78.43 C
ATOM 14 N1 C B 25 59.679 11.065 99.978 1.00 77.39 N
ATOM 15 C2 C B 25 59.879 11.940 101.055 1.00 76.79 C
ATOM 16 O2 C B 25 59.555 13.133 100.936 1.00 77.10 O
ATOM 17 N3 C B 25 60.417 11.466 102.196 1.00 75.94 N
ATOM 18 C4 C B 25 60.748 10.180 102.294 1.00 75.56 C
ATOM 19 N4 C B 25 61.274 9.758 103.444 1.00 76.84 N
ATOM 20 C5 C B 25 60.554 9.269 101.222 1.00 75.38 C
ATOM 21 C6 C B 25 60.023 9.748 100.093 1.00 76.27 C
ATOM 22 P C B 26 62.649 12.550 95.647 1.00 72.99 P
ATOM 23 OP1 C B 26 62.872 13.082 94.275 1.00 70.84 O
ATOM 24 OP2 C B 26 63.424 11.375 96.121 1.00 73.34 O
ATOM 25 O5' C B 26 62.856 13.705 96.719 1.00 72.30 O
TER
ATOM 2 P G A 21 59.467 7.749 112.103 1.00 90.27 P
ATOM 3 OP1 G A 21 59.187 6.990 113.347 1.00 89.80 O
ATOM 4 OP2 G A 21 60.807 8.371 111.913 1.00 89.77 O
ATOM 5 O5' G A 21 59.152 6.810 110.855 1.00 91.92 O
ATOM 6 C5' G A 21 60.211 6.243 110.076 1.00 95.69 C
ATOM 7 C4' G A 21 60.040 6.593 108.617 1.00 98.78 C
ATOM 8 O4' G A 21 59.749 8.003 108.465 1.00 97.35 O
ATOM 9 C3' G A 21 61.304 6.355 107.815 1.00102.57 C
ATOM 10 O3' G A 21 61.327 5.003 107.366 1.00111.34 O
ATOM 11 C2' G A 21 61.193 7.360 106.676 1.00100.01 C
ATOM 12 O2' G A 21 60.405 6.872 105.611 1.00100.38 O
ATOM 13 C1' G A 21 60.473 8.527 107.363 1.00 97.14 C
ATOM 14 N9 G A 21 61.312 9.618 107.859 1.00 94.83 N
ATOM 15 C8 G A 21 61.932 9.688 109.086 1.00 93.99 C
ATOM 16 N7 G A 21 62.548 10.822 109.287 1.00 92.25 N
ATOM 17 C5 G A 21 62.339 11.541 108.118 1.00 91.47 C
ATOM 18 C6 G A 21 62.754 12.848 107.759 1.00 89.95 C
ATOM 19 O6 G A 21 63.398 13.664 108.428 1.00 89.78 O
ATOM 20 N1 G A 21 62.337 13.181 106.478 1.00 88.92 N
ATOM 21 C2 G A 21 61.609 12.370 105.650 1.00 89.26 C
ATOM 22 N2 G A 21 61.312 12.875 104.451 1.00 88.87 N
ATOM 23 N3 G A 21 61.203 11.154 105.973 1.00 90.49 N
ATOM 24 C4 G A 21 61.599 10.805 107.215 1.00 92.49 C
ATOM 25 P U A 22 62.409 3.982 107.969 1.00117.26 P
ATOM 26 OP1 U A 22 62.511 4.240 109.432 1.00117.10 O
ATOM 27 OP2 U A 22 63.627 4.070 107.121 1.00117.50 O
ATOM 28 O5' U A 22 61.759 2.537 107.777 1.00120.68 O
TER
ATOM 1 O3' G B 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 2 P C B 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 3 OP1 C B 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 4 OP2 C B 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 5 O5' C B 25 60.674 8.663 96.598 1.00 87.18 O
ATOM 6 C5' C B 25 59.628 9.373 95.918 1.00 82.60 C
ATOM 7 C4' C B 25 59.374 10.704 96.582 1.00 79.44 C
ATOM 8 O4' C B 25 58.743 10.515 97.874 1.00 79.13 O
ATOM 9 C3' C B 25 60.595 11.542 96.907 1.00 77.45 C
ATOM 10 O3' C B 25 61.087 12.210 95.757 1.00 75.14 O
ATOM 11 C2' C B 25 60.038 12.511 97.939 1.00 78.25 C
ATOM 12 O2' C B 25 59.285 13.559 97.356 1.00 78.93 O
ATOM 13 C1' C B 25 59.093 11.597 98.727 1.00 78.43 C
ATOM 14 N1 C B 25 59.679 11.065 99.978 1.00 77.39 N
ATOM 15 C2 C B 25 59.879 11.940 101.055 1.00 76.79 C
ATOM 16 O2 C B 25 59.555 13.133 100.936 1.00 77.10 O
ATOM 17 N3 C B 25 60.417 11.466 102.196 1.00 75.94 N
ATOM 18 C4 C B 25 60.748 10.180 102.294 1.00 75.56 C
ATOM 19 N4 C B 25 61.274 9.758 103.444 1.00 76.84 N
ATOM 20 C5 C B 25 60.554 9.269 101.222 1.00 75.38 C
ATOM 21 C6 C B 25 60.023 9.748 100.093 1.00 76.27 C
ATOM 22 P C B 26 62.649 12.550 95.647 1.00 72.99 P
ATOM 23 OP1 C B 26 62.872 13.082 94.275 1.00 70.84 O
ATOM 24 OP2 C B 26 63.424 11.375 96.121 1.00 73.34 O
ATOM 25 O5' C B 26 62.856 13.705 96.719 1.00 72.30 O
TER
Atoms:
OP1: (59.187,6.990,113.347)
OP2: (60.807,8.371,111.913)
C3': (61.304,6.355,107.815)
C1': (60.473,8.527,107.363)
C5': (60.211,6.243,110.076)
O6: (63.398,13.664,108.428)
O4': (59.749,8.003,108.465)
C8: (61.932,9.688,109.086)
C2: (61.609,12.370,105.650)
C6: (62.754,12.848,107.759)
C5: (62.339,11.541,108.118)
C4: (61.599,10.805,107.215)
P: (59.467,7.749,112.103)
C4': (60.040,6.593,108.617)
C2': (61.193,7.360,106.676)
O2': (60.405,6.872,105.611)
N1: (62.337,13.181,106.478)
N2: (61.312,12.875,104.451)
N3: (61.203,11.154,105.973)
N7: (62.548,10.822,109.287)
N9: (61.312,9.618,107.859)
O5': (59.152,6.810,110.855)
O3': (61.327,5.003,107.366)
OP2: (60.807,8.371,111.913)
C3': (61.304,6.355,107.815)
C1': (60.473,8.527,107.363)
C5': (60.211,6.243,110.076)
O6: (63.398,13.664,108.428)
O4': (59.749,8.003,108.465)
C8: (61.932,9.688,109.086)
C2: (61.609,12.370,105.650)
C6: (62.754,12.848,107.759)
C5: (62.339,11.541,108.118)
C4: (61.599,10.805,107.215)
P: (59.467,7.749,112.103)
C4': (60.040,6.593,108.617)
C2': (61.193,7.360,106.676)
O2': (60.405,6.872,105.611)
N1: (62.337,13.181,106.478)
N2: (61.312,12.875,104.451)
N3: (61.203,11.154,105.973)
N7: (62.548,10.822,109.287)
N9: (61.312,9.618,107.859)
O5': (59.152,6.810,110.855)
O3': (61.327,5.003,107.366)
C2: (59.879,11.940,101.055)
OP1: (61.565,7.467,94.599)
OP2: (62.236,6.766,96.974)
C4: (60.748,10.180,102.294)
O5': (60.674,8.663,96.598)
C3': (60.595,11.542,96.907)
C1': (59.093,11.597,98.727)
O4': (58.743,10.515,97.874)
C5': (59.628,9.373,95.918)
P: (61.213,7.280,96.028)
O2: (59.555,13.133,100.936)
C4': (59.374,10.704,96.582)
C2': (60.038,12.511,97.939)
O2': (59.285,13.559,97.356)
N1: (59.679,11.065,99.978)
N3: (60.417,11.466,102.196)
N4: (61.274,9.758,103.444)
C6: (60.023,9.748,100.093)
C5: (60.554,9.269,101.222)
O3': (61.087,12.210,95.757)
OP1: (61.565,7.467,94.599)
OP2: (62.236,6.766,96.974)
C4: (60.748,10.180,102.294)
O5': (60.674,8.663,96.598)
C3': (60.595,11.542,96.907)
C1': (59.093,11.597,98.727)
O4': (58.743,10.515,97.874)
C5': (59.628,9.373,95.918)
P: (61.213,7.280,96.028)
O2: (59.555,13.133,100.936)
C4': (59.374,10.704,96.582)
C2': (60.038,12.511,97.939)
O2': (59.285,13.559,97.356)
N1: (59.679,11.065,99.978)
N3: (60.417,11.466,102.196)
N4: (61.274,9.758,103.444)
C6: (60.023,9.748,100.093)
C5: (60.554,9.269,101.222)
O3': (61.087,12.210,95.757)
Image (generated by PyMOL):