Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3G9C:P40:P39
Extra
PDB:
ATOM 1 O3' U A 39 4.860 -50.418 3.486 1.00 65.60 O
ATOM 2 P U A 40 5.394 -48.940 3.822 1.00 65.57 P
ATOM 3 OP1 U A 40 6.410 -48.598 2.800 1.00 65.33 O
ATOM 4 OP2 U A 40 5.734 -48.858 5.265 1.00 65.36 O
ATOM 5 O5' U A 40 4.116 -48.020 3.545 1.00 64.95 O
ATOM 6 C5' U A 40 3.207 -47.715 4.596 1.00 63.88 C
ATOM 7 C4' U A 40 1.837 -47.346 4.050 1.00 63.02 C
ATOM 8 O4' U A 40 1.825 -47.376 2.599 1.00 63.15 O
ATOM 9 C3' U A 40 0.701 -48.256 4.498 1.00 62.18 C
ATOM 10 O3' U A 40 -0.433 -47.444 4.763 1.00 60.68 O
ATOM 11 C2' U A 40 0.470 -49.182 3.303 1.00 62.68 C
ATOM 12 O2' U A 40 -0.879 -49.594 3.185 1.00 62.88 O
ATOM 13 C1' U A 40 0.843 -48.283 2.129 1.00 63.01 C
ATOM 14 N1 U A 40 1.387 -49.003 0.929 1.00 63.35 N
ATOM 15 C2 U A 40 0.548 -49.290 -0.137 1.00 63.55 C
ATOM 16 O2 U A 40 -0.636 -49.000 -0.164 1.00 63.59 O
ATOM 17 N3 U A 40 1.154 -49.942 -1.188 1.00 63.76 N
ATOM 18 C4 U A 40 2.484 -50.325 -1.279 1.00 63.81 C
ATOM 19 O4 U A 40 2.887 -50.904 -2.282 1.00 64.33 O
ATOM 20 C5 U A 40 3.296 -49.990 -0.138 1.00 63.61 C
ATOM 21 C6 U A 40 2.728 -49.356 0.898 1.00 63.54 C
ATOM 22 P A A 41 -0.864 -47.094 6.260 1.00 59.48 P
ATOM 23 OP1 A A 41 -2.079 -46.252 6.179 1.00 59.68 O
ATOM 24 OP2 A A 41 0.323 -46.598 6.993 1.00 59.54 O
ATOM 25 O5' A A 41 -1.285 -48.521 6.842 1.00 58.88 O
TER
ATOM 1 O3' U B 38 9.158 -55.140 4.804 1.00 67.56 O
ATOM 2 P U B 39 9.301 -53.568 5.070 1.00 67.48 P
ATOM 3 OP1 U B 39 10.019 -52.993 3.907 1.00 67.47 O
ATOM 4 OP2 U B 39 9.849 -53.372 6.432 1.00 67.22 O
ATOM 5 O5' U B 39 7.776 -53.059 5.050 1.00 67.31 O
ATOM 6 C5' U B 39 7.131 -52.663 3.831 1.00 66.40 C
ATOM 7 C4' U B 39 5.614 -52.711 3.930 1.00 65.86 C
ATOM 8 O4' U B 39 5.187 -53.729 4.873 1.00 65.78 O
ATOM 9 C3' U B 39 4.931 -51.460 4.464 1.00 65.74 C
ATOM 10 O3' U B 39 4.860 -50.418 3.486 1.00 65.60 O
ATOM 11 C2' U B 39 3.558 -52.021 4.825 1.00 65.46 C
ATOM 12 O2' U B 39 2.727 -52.240 3.699 1.00 65.36 O
ATOM 13 C1' U B 39 3.943 -53.358 5.453 1.00 65.34 C
ATOM 14 N1 U B 39 4.049 -53.332 6.962 1.00 65.15 N
ATOM 15 C2 U B 39 2.899 -53.320 7.743 1.00 65.02 C
ATOM 16 O2 U B 39 1.767 -53.325 7.293 1.00 65.18 O
ATOM 17 N3 U B 39 3.115 -53.298 9.103 1.00 64.76 N
ATOM 18 C4 U B 39 4.338 -53.288 9.752 1.00 64.93 C
ATOM 19 O4 U B 39 4.380 -53.269 10.977 1.00 65.02 O
ATOM 20 C5 U B 39 5.488 -53.304 8.883 1.00 65.11 C
ATOM 21 C6 U B 39 5.303 -53.326 7.555 1.00 65.22 C
ATOM 22 P U B 40 5.394 -48.940 3.822 1.00 65.57 P
ATOM 23 OP1 U B 40 6.410 -48.598 2.800 1.00 65.33 O
ATOM 24 OP2 U B 40 5.734 -48.858 5.265 1.00 65.36 O
ATOM 25 O5' U B 40 4.116 -48.020 3.545 1.00 64.95 O
TER
ATOM 2 P U A 40 5.394 -48.940 3.822 1.00 65.57 P
ATOM 3 OP1 U A 40 6.410 -48.598 2.800 1.00 65.33 O
ATOM 4 OP2 U A 40 5.734 -48.858 5.265 1.00 65.36 O
ATOM 5 O5' U A 40 4.116 -48.020 3.545 1.00 64.95 O
ATOM 6 C5' U A 40 3.207 -47.715 4.596 1.00 63.88 C
ATOM 7 C4' U A 40 1.837 -47.346 4.050 1.00 63.02 C
ATOM 8 O4' U A 40 1.825 -47.376 2.599 1.00 63.15 O
ATOM 9 C3' U A 40 0.701 -48.256 4.498 1.00 62.18 C
ATOM 10 O3' U A 40 -0.433 -47.444 4.763 1.00 60.68 O
ATOM 11 C2' U A 40 0.470 -49.182 3.303 1.00 62.68 C
ATOM 12 O2' U A 40 -0.879 -49.594 3.185 1.00 62.88 O
ATOM 13 C1' U A 40 0.843 -48.283 2.129 1.00 63.01 C
ATOM 14 N1 U A 40 1.387 -49.003 0.929 1.00 63.35 N
ATOM 15 C2 U A 40 0.548 -49.290 -0.137 1.00 63.55 C
ATOM 16 O2 U A 40 -0.636 -49.000 -0.164 1.00 63.59 O
ATOM 17 N3 U A 40 1.154 -49.942 -1.188 1.00 63.76 N
ATOM 18 C4 U A 40 2.484 -50.325 -1.279 1.00 63.81 C
ATOM 19 O4 U A 40 2.887 -50.904 -2.282 1.00 64.33 O
ATOM 20 C5 U A 40 3.296 -49.990 -0.138 1.00 63.61 C
ATOM 21 C6 U A 40 2.728 -49.356 0.898 1.00 63.54 C
ATOM 22 P A A 41 -0.864 -47.094 6.260 1.00 59.48 P
ATOM 23 OP1 A A 41 -2.079 -46.252 6.179 1.00 59.68 O
ATOM 24 OP2 A A 41 0.323 -46.598 6.993 1.00 59.54 O
ATOM 25 O5' A A 41 -1.285 -48.521 6.842 1.00 58.88 O
TER
ATOM 1 O3' U B 38 9.158 -55.140 4.804 1.00 67.56 O
ATOM 2 P U B 39 9.301 -53.568 5.070 1.00 67.48 P
ATOM 3 OP1 U B 39 10.019 -52.993 3.907 1.00 67.47 O
ATOM 4 OP2 U B 39 9.849 -53.372 6.432 1.00 67.22 O
ATOM 5 O5' U B 39 7.776 -53.059 5.050 1.00 67.31 O
ATOM 6 C5' U B 39 7.131 -52.663 3.831 1.00 66.40 C
ATOM 7 C4' U B 39 5.614 -52.711 3.930 1.00 65.86 C
ATOM 8 O4' U B 39 5.187 -53.729 4.873 1.00 65.78 O
ATOM 9 C3' U B 39 4.931 -51.460 4.464 1.00 65.74 C
ATOM 10 O3' U B 39 4.860 -50.418 3.486 1.00 65.60 O
ATOM 11 C2' U B 39 3.558 -52.021 4.825 1.00 65.46 C
ATOM 12 O2' U B 39 2.727 -52.240 3.699 1.00 65.36 O
ATOM 13 C1' U B 39 3.943 -53.358 5.453 1.00 65.34 C
ATOM 14 N1 U B 39 4.049 -53.332 6.962 1.00 65.15 N
ATOM 15 C2 U B 39 2.899 -53.320 7.743 1.00 65.02 C
ATOM 16 O2 U B 39 1.767 -53.325 7.293 1.00 65.18 O
ATOM 17 N3 U B 39 3.115 -53.298 9.103 1.00 64.76 N
ATOM 18 C4 U B 39 4.338 -53.288 9.752 1.00 64.93 C
ATOM 19 O4 U B 39 4.380 -53.269 10.977 1.00 65.02 O
ATOM 20 C5 U B 39 5.488 -53.304 8.883 1.00 65.11 C
ATOM 21 C6 U B 39 5.303 -53.326 7.555 1.00 65.22 C
ATOM 22 P U B 40 5.394 -48.940 3.822 1.00 65.57 P
ATOM 23 OP1 U B 40 6.410 -48.598 2.800 1.00 65.33 O
ATOM 24 OP2 U B 40 5.734 -48.858 5.265 1.00 65.36 O
ATOM 25 O5' U B 40 4.116 -48.020 3.545 1.00 64.95 O
TER
Atoms:
C4: (2.484,-50.325,-1.279)
N3: (1.154,-49.942,-1.188)
OP1: (6.410,-48.598,2.800)
OP2: (5.734,-48.858,5.265)
C2: (0.548,-49.290,-0.137)
C1': (0.843,-48.283,2.129)
C3': (0.701,-48.256,4.498)
O5': (4.116,-48.020,3.545)
O4': (1.825,-47.376,2.599)
C5': (3.207,-47.715,4.596)
P: (5.394,-48.940,3.822)
C4': (1.837,-47.346,4.050)
C2': (0.470,-49.182,3.303)
O2': (-0.879,-49.594,3.185)
N1: (1.387,-49.003,0.929)
O4: (2.887,-50.904,-2.282)
O2: (-0.636,-49.000,-0.164)
C6: (2.728,-49.356,0.898)
C5: (3.296,-49.990,-0.138)
O3': (-0.433,-47.444,4.763)
N3: (1.154,-49.942,-1.188)
OP1: (6.410,-48.598,2.800)
OP2: (5.734,-48.858,5.265)
C2: (0.548,-49.290,-0.137)
C1': (0.843,-48.283,2.129)
C3': (0.701,-48.256,4.498)
O5': (4.116,-48.020,3.545)
O4': (1.825,-47.376,2.599)
C5': (3.207,-47.715,4.596)
P: (5.394,-48.940,3.822)
C4': (1.837,-47.346,4.050)
C2': (0.470,-49.182,3.303)
O2': (-0.879,-49.594,3.185)
N1: (1.387,-49.003,0.929)
O4: (2.887,-50.904,-2.282)
O2: (-0.636,-49.000,-0.164)
C6: (2.728,-49.356,0.898)
C5: (3.296,-49.990,-0.138)
O3': (-0.433,-47.444,4.763)
C4: (4.338,-53.288,9.752)
N3: (3.115,-53.298,9.103)
OP1: (10.019,-52.993,3.907)
OP2: (9.849,-53.372,6.432)
C2: (2.899,-53.320,7.743)
C1': (3.943,-53.358,5.453)
C3': (4.931,-51.460,4.464)
O5': (7.776,-53.059,5.050)
O4': (5.187,-53.729,4.873)
C5': (7.131,-52.663,3.831)
P: (9.301,-53.568,5.070)
C4': (5.614,-52.711,3.930)
C2': (3.558,-52.021,4.825)
O2': (2.727,-52.240,3.699)
N1: (4.049,-53.332,6.962)
O4: (4.380,-53.269,10.977)
O2: (1.767,-53.325,7.293)
C6: (5.303,-53.326,7.555)
C5: (5.488,-53.304,8.883)
O3': (4.860,-50.418,3.486)
N3: (3.115,-53.298,9.103)
OP1: (10.019,-52.993,3.907)
OP2: (9.849,-53.372,6.432)
C2: (2.899,-53.320,7.743)
C1': (3.943,-53.358,5.453)
C3': (4.931,-51.460,4.464)
O5': (7.776,-53.059,5.050)
O4': (5.187,-53.729,4.873)
C5': (7.131,-52.663,3.831)
P: (9.301,-53.568,5.070)
C4': (5.614,-52.711,3.930)
C2': (3.558,-52.021,4.825)
O2': (2.727,-52.240,3.699)
N1: (4.049,-53.332,6.962)
O4: (4.380,-53.269,10.977)
O2: (1.767,-53.325,7.293)
C6: (5.303,-53.326,7.555)
C5: (5.488,-53.304,8.883)
O3': (4.860,-50.418,3.486)
Image (generated by PyMOL):