Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12090:12092
Extra
PDB:
ATOM 1 O3' U A2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 2 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G A2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G A2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G A2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G A2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G A2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G A2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G A2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G A2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G A2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G A2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G A2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G A2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G A2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G A2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G A2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G A2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G A2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G A2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G A2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C A2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C A2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C A2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C A2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
ATOM 1 O3' C B2091 -0.909 -1.980 61.500 1.00 49.83 O
ATOM 2 P C B2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 3 OP1 C B2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 4 OP2 C B2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 5 O5' C B2092 -2.151 -0.823 59.701 1.00 46.83 O
ATOM 6 C5' C B2092 -2.081 -1.942 58.833 1.00 46.81 C
ATOM 7 C4' C B2092 -3.438 -2.439 58.448 1.00 47.10 C
ATOM 8 O4' C B2092 -4.089 -3.072 59.586 1.00 47.13 O
ATOM 9 C3' C B2092 -4.417 -1.395 58.024 1.00 47.41 C
ATOM 10 O3' C B2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 11 C2' C B2092 -5.748 -2.111 58.230 1.00 47.65 C
ATOM 12 O2' C B2092 -5.941 -3.060 57.214 1.00 47.73 O
ATOM 13 C1' C B2092 -5.483 -2.876 59.511 1.00 47.46 C
ATOM 14 N1 C B2092 -5.910 -2.138 60.705 1.00 47.51 N
ATOM 15 C2 C B2092 -7.205 -2.239 61.241 1.00 47.77 C
ATOM 16 O2 C B2092 -8.066 -2.977 60.690 1.00 47.97 O
ATOM 17 N3 C B2092 -7.512 -1.529 62.374 1.00 47.82 N
ATOM 18 C4 C B2092 -6.595 -0.752 62.974 1.00 47.63 C
ATOM 19 N4 C B2092 -6.907 -0.066 64.094 1.00 47.69 N
ATOM 20 C5 C B2092 -5.268 -0.664 62.442 1.00 47.36 C
ATOM 21 C6 C B2092 -4.988 -1.376 61.346 1.00 47.31 C
ATOM 22 P U B2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 23 OP1 U B2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 24 OP2 U B2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 25 O5' U B2093 -4.055 1.419 57.426 1.00 45.44 O
TER
ATOM 2 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 3 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 4 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 5 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
ATOM 6 C5' G A2090 -4.944 -1.261 70.173 1.00 44.53 C
ATOM 7 C4' G A2090 -5.204 -1.282 68.700 1.00 44.60 C
ATOM 8 O4' G A2090 -6.602 -1.560 68.448 1.00 44.89 O
ATOM 9 C3' G A2090 -4.896 0.006 67.949 1.00 44.63 C
ATOM 10 O3' G A2090 -4.520 -0.367 66.648 1.00 44.55 O
ATOM 11 C2' G A2090 -6.270 0.644 67.844 1.00 44.98 C
ATOM 12 O2' G A2090 -6.385 1.583 66.802 1.00 45.10 O
ATOM 13 C1' G A2090 -7.098 -0.590 67.559 1.00 45.08 C
ATOM 14 N9 G A2090 -8.536 -0.456 67.782 1.00 45.42 N
ATOM 15 C8 G A2090 -9.240 -0.175 68.925 1.00 45.59 C
ATOM 16 N7 G A2090 -10.527 -0.205 68.781 1.00 45.90 N
ATOM 17 C5 G A2090 -10.674 -0.560 67.457 1.00 45.93 C
ATOM 18 C6 G A2090 -11.853 -0.738 66.716 1.00 46.23 C
ATOM 19 O6 G A2090 -12.982 -0.593 67.186 1.00 46.52 O
ATOM 20 N1 G A2090 -11.558 -1.099 65.397 1.00 46.18 N
ATOM 21 C2 G A2090 -10.276 -1.240 64.916 1.00 45.87 C
ATOM 22 N2 G A2090 -10.067 -1.561 63.655 1.00 45.86 N
ATOM 23 N3 G A2090 -9.187 -1.066 65.590 1.00 45.59 N
ATOM 24 C4 G A2090 -9.466 -0.732 66.845 1.00 45.65 C
ATOM 25 P C A2091 -3.298 0.309 65.866 1.00 50.30 P
ATOM 26 OP1 C A2091 -2.482 1.064 66.871 1.00 50.16 O
ATOM 27 OP2 C A2091 -3.884 1.058 64.686 1.00 50.52 O
ATOM 28 O5' C A2091 -2.542 -0.998 65.396 1.00 50.06 O
TER
ATOM 1 O3' C B2091 -0.909 -1.980 61.500 1.00 49.83 O
ATOM 2 P C B2092 -1.005 -0.566 60.792 1.00 46.54 P
ATOM 3 OP1 C B2092 0.304 -0.322 60.119 1.00 46.33 O
ATOM 4 OP2 C B2092 -1.468 0.410 61.811 1.00 46.65 O
ATOM 5 O5' C B2092 -2.151 -0.823 59.701 1.00 46.83 O
ATOM 6 C5' C B2092 -2.081 -1.942 58.833 1.00 46.81 C
ATOM 7 C4' C B2092 -3.438 -2.439 58.448 1.00 47.10 C
ATOM 8 O4' C B2092 -4.089 -3.072 59.586 1.00 47.13 O
ATOM 9 C3' C B2092 -4.417 -1.395 58.024 1.00 47.41 C
ATOM 10 O3' C B2092 -4.198 -0.968 56.710 1.00 47.50 O
ATOM 11 C2' C B2092 -5.748 -2.111 58.230 1.00 47.65 C
ATOM 12 O2' C B2092 -5.941 -3.060 57.214 1.00 47.73 O
ATOM 13 C1' C B2092 -5.483 -2.876 59.511 1.00 47.46 C
ATOM 14 N1 C B2092 -5.910 -2.138 60.705 1.00 47.51 N
ATOM 15 C2 C B2092 -7.205 -2.239 61.241 1.00 47.77 C
ATOM 16 O2 C B2092 -8.066 -2.977 60.690 1.00 47.97 O
ATOM 17 N3 C B2092 -7.512 -1.529 62.374 1.00 47.82 N
ATOM 18 C4 C B2092 -6.595 -0.752 62.974 1.00 47.63 C
ATOM 19 N4 C B2092 -6.907 -0.066 64.094 1.00 47.69 N
ATOM 20 C5 C B2092 -5.268 -0.664 62.442 1.00 47.36 C
ATOM 21 C6 C B2092 -4.988 -1.376 61.346 1.00 47.31 C
ATOM 22 P U B2093 -4.661 0.502 56.261 1.00 45.61 P
ATOM 23 OP1 U B2093 -6.163 0.512 56.293 1.00 45.95 O
ATOM 24 OP2 U B2093 -3.980 0.823 54.963 1.00 45.60 O
ATOM 25 O5' U B2093 -4.055 1.419 57.426 1.00 45.44 O
TER
Atoms:
OP1: (-2.477,-2.294,71.273)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
OP2: (-1.545,0.027,71.227)
C3': (-4.896,0.006,67.949)
C1': (-7.098,-0.590,67.559)
C5': (-4.944,-1.261,70.173)
O6: (-12.982,-0.593,67.186)
O4': (-6.602,-1.560,68.448)
C8: (-9.240,-0.175,68.925)
C2: (-10.276,-1.240,64.916)
C6: (-11.853,-0.738,66.716)
C5: (-10.674,-0.560,67.457)
C4: (-9.466,-0.732,66.845)
P: (-2.691,-0.875,71.415)
C4': (-5.204,-1.282,68.700)
C2': (-6.270,0.644,67.844)
O2': (-6.385,1.583,66.802)
N1: (-11.558,-1.099,65.397)
N2: (-10.067,-1.561,63.655)
N3: (-9.187,-1.066,65.590)
N7: (-10.527,-0.205,68.781)
N9: (-8.536,-0.456,67.782)
O5': (-3.850,-0.424,70.464)
O3': (-4.520,-0.367,66.648)
C2: (-7.205,-2.239,61.241)
OP1: (0.304,-0.322,60.119)
OP2: (-1.468,0.410,61.811)
C4: (-6.595,-0.752,62.974)
O5': (-2.151,-0.823,59.701)
C3': (-4.417,-1.395,58.024)
C1': (-5.483,-2.876,59.511)
O4': (-4.089,-3.072,59.586)
C5': (-2.081,-1.942,58.833)
P: (-1.005,-0.566,60.792)
O2: (-8.066,-2.977,60.690)
C4': (-3.438,-2.439,58.448)
C2': (-5.748,-2.111,58.230)
O2': (-5.941,-3.060,57.214)
N1: (-5.910,-2.138,60.705)
N3: (-7.512,-1.529,62.374)
N4: (-6.907,-0.066,64.094)
C6: (-4.988,-1.376,61.346)
C5: (-5.268,-0.664,62.442)
O3': (-4.198,-0.968,56.710)
OP1: (0.304,-0.322,60.119)
OP2: (-1.468,0.410,61.811)
C4: (-6.595,-0.752,62.974)
O5': (-2.151,-0.823,59.701)
C3': (-4.417,-1.395,58.024)
C1': (-5.483,-2.876,59.511)
O4': (-4.089,-3.072,59.586)
C5': (-2.081,-1.942,58.833)
P: (-1.005,-0.566,60.792)
O2: (-8.066,-2.977,60.690)
C4': (-3.438,-2.439,58.448)
C2': (-5.748,-2.111,58.230)
O2': (-5.941,-3.060,57.214)
N1: (-5.910,-2.138,60.705)
N3: (-7.512,-1.529,62.374)
N4: (-6.907,-0.066,64.094)
C6: (-4.988,-1.376,61.346)
C5: (-5.268,-0.664,62.442)
O3': (-4.198,-0.968,56.710)
Image (generated by PyMOL):