Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
413D:A6:A5
Extra
PDB:
ATOM 1 O3' U A 5 -7.222 -0.222 -4.843 1.00 8.60 O
ATOM 2 P U A 6 -5.835 0.256 -5.479 1.00 8.84 P
ATOM 3 OP1 U A 6 -5.863 -0.048 -6.918 1.00 11.14 O
ATOM 4 OP2 U A 6 -4.719 -0.231 -4.657 1.00 8.96 O
ATOM 5 O5' U A 6 -5.889 1.838 -5.323 1.00 9.71 O
ATOM 6 C5' U A 6 -6.833 2.614 -6.046 1.00 8.57 C
ATOM 7 C4' U A 6 -6.554 4.078 -5.837 1.00 6.45 C
ATOM 8 O4' U A 6 -6.738 4.407 -4.432 1.00 7.73 O
ATOM 9 C3' U A 6 -5.123 4.507 -6.108 1.00 6.56 C
ATOM 10 O3' U A 6 -4.889 4.678 -7.502 1.00 8.22 O
ATOM 11 C2' U A 6 -5.056 5.812 -5.327 1.00 7.15 C
ATOM 12 O2' U A 6 -5.741 6.868 -5.964 1.00 6.69 O
ATOM 13 C1' U A 6 -5.828 5.434 -4.063 1.00 6.84 C
ATOM 14 N1 U A 6 -4.940 4.927 -3.006 1.00 7.36 N
ATOM 15 C2 U A 6 -4.190 5.852 -2.324 1.00 7.42 C
ATOM 16 O2 U A 6 -4.251 7.043 -2.554 1.00 9.10 O
ATOM 17 N3 U A 6 -3.364 5.336 -1.359 1.00 7.59 N
ATOM 18 C4 U A 6 -3.217 4.013 -1.015 1.00 7.57 C
ATOM 19 O4 U A 6 -2.401 3.702 -0.145 1.00 7.77 O
ATOM 20 C5 U A 6 -4.034 3.111 -1.765 1.00 7.02 C
ATOM 21 C6 U A 6 -4.849 3.588 -2.711 1.00 6.83 C
ATOM 22 P C A 7 -3.424 4.408 -8.106 1.00 9.78 P
ATOM 23 OP1 C A 7 -3.518 4.503 -9.585 1.00 10.80 O
ATOM 24 OP2 C A 7 -2.860 3.183 -7.484 1.00 10.01 O
ATOM 25 O5' C A 7 -2.556 5.634 -7.584 1.00 10.76 O
TER
ATOM 1 O3' C B 4 -8.526 -5.637 -2.396 1.00 8.45 O
ATOM 2 P U B 5 -7.338 -5.073 -3.305 1.00 10.92 P
ATOM 3 OP1 U B 5 -7.655 -5.447 -4.703 1.00 10.70 O
ATOM 4 OP2 U B 5 -6.047 -5.469 -2.717 1.00 10.64 O
ATOM 5 O5' U B 5 -7.461 -3.492 -3.152 1.00 10.68 O
ATOM 6 C5' U B 5 -8.641 -2.805 -3.570 1.00 9.35 C
ATOM 7 C4' U B 5 -8.569 -1.347 -3.168 1.00 8.24 C
ATOM 8 O4' U B 5 -8.675 -1.224 -1.727 1.00 9.53 O
ATOM 9 C3' U B 5 -7.266 -0.634 -3.487 1.00 8.95 C
ATOM 10 O3' U B 5 -7.222 -0.222 -4.843 1.00 8.60 O
ATOM 11 C2' U B 5 -7.333 0.550 -2.537 1.00 8.69 C
ATOM 12 O2' U B 5 -8.205 1.560 -3.003 1.00 8.19 O
ATOM 13 C1' U B 5 -7.912 -0.114 -1.285 1.00 8.52 C
ATOM 14 N1 U B 5 -6.850 -0.601 -0.393 1.00 8.78 N
ATOM 15 C2 U B 5 -6.227 0.327 0.416 1.00 8.46 C
ATOM 16 O2 U B 5 -6.547 1.499 0.443 1.00 9.25 O
ATOM 17 N3 U B 5 -5.216 -0.170 1.194 1.00 7.69 N
ATOM 18 C4 U B 5 -4.775 -1.476 1.249 1.00 7.97 C
ATOM 19 O4 U B 5 -3.818 -1.757 1.969 1.00 8.62 O
ATOM 20 C5 U B 5 -5.481 -2.382 0.398 1.00 7.21 C
ATOM 21 C6 U B 5 -6.470 -1.927 -0.374 1.00 7.50 C
ATOM 22 P U B 6 -5.835 0.256 -5.479 1.00 8.84 P
ATOM 23 OP1 U B 6 -5.863 -0.048 -6.918 1.00 11.14 O
ATOM 24 OP2 U B 6 -4.719 -0.231 -4.657 1.00 8.96 O
ATOM 25 O5' U B 6 -5.889 1.838 -5.323 1.00 9.71 O
TER
ATOM 2 P U A 6 -5.835 0.256 -5.479 1.00 8.84 P
ATOM 3 OP1 U A 6 -5.863 -0.048 -6.918 1.00 11.14 O
ATOM 4 OP2 U A 6 -4.719 -0.231 -4.657 1.00 8.96 O
ATOM 5 O5' U A 6 -5.889 1.838 -5.323 1.00 9.71 O
ATOM 6 C5' U A 6 -6.833 2.614 -6.046 1.00 8.57 C
ATOM 7 C4' U A 6 -6.554 4.078 -5.837 1.00 6.45 C
ATOM 8 O4' U A 6 -6.738 4.407 -4.432 1.00 7.73 O
ATOM 9 C3' U A 6 -5.123 4.507 -6.108 1.00 6.56 C
ATOM 10 O3' U A 6 -4.889 4.678 -7.502 1.00 8.22 O
ATOM 11 C2' U A 6 -5.056 5.812 -5.327 1.00 7.15 C
ATOM 12 O2' U A 6 -5.741 6.868 -5.964 1.00 6.69 O
ATOM 13 C1' U A 6 -5.828 5.434 -4.063 1.00 6.84 C
ATOM 14 N1 U A 6 -4.940 4.927 -3.006 1.00 7.36 N
ATOM 15 C2 U A 6 -4.190 5.852 -2.324 1.00 7.42 C
ATOM 16 O2 U A 6 -4.251 7.043 -2.554 1.00 9.10 O
ATOM 17 N3 U A 6 -3.364 5.336 -1.359 1.00 7.59 N
ATOM 18 C4 U A 6 -3.217 4.013 -1.015 1.00 7.57 C
ATOM 19 O4 U A 6 -2.401 3.702 -0.145 1.00 7.77 O
ATOM 20 C5 U A 6 -4.034 3.111 -1.765 1.00 7.02 C
ATOM 21 C6 U A 6 -4.849 3.588 -2.711 1.00 6.83 C
ATOM 22 P C A 7 -3.424 4.408 -8.106 1.00 9.78 P
ATOM 23 OP1 C A 7 -3.518 4.503 -9.585 1.00 10.80 O
ATOM 24 OP2 C A 7 -2.860 3.183 -7.484 1.00 10.01 O
ATOM 25 O5' C A 7 -2.556 5.634 -7.584 1.00 10.76 O
TER
ATOM 1 O3' C B 4 -8.526 -5.637 -2.396 1.00 8.45 O
ATOM 2 P U B 5 -7.338 -5.073 -3.305 1.00 10.92 P
ATOM 3 OP1 U B 5 -7.655 -5.447 -4.703 1.00 10.70 O
ATOM 4 OP2 U B 5 -6.047 -5.469 -2.717 1.00 10.64 O
ATOM 5 O5' U B 5 -7.461 -3.492 -3.152 1.00 10.68 O
ATOM 6 C5' U B 5 -8.641 -2.805 -3.570 1.00 9.35 C
ATOM 7 C4' U B 5 -8.569 -1.347 -3.168 1.00 8.24 C
ATOM 8 O4' U B 5 -8.675 -1.224 -1.727 1.00 9.53 O
ATOM 9 C3' U B 5 -7.266 -0.634 -3.487 1.00 8.95 C
ATOM 10 O3' U B 5 -7.222 -0.222 -4.843 1.00 8.60 O
ATOM 11 C2' U B 5 -7.333 0.550 -2.537 1.00 8.69 C
ATOM 12 O2' U B 5 -8.205 1.560 -3.003 1.00 8.19 O
ATOM 13 C1' U B 5 -7.912 -0.114 -1.285 1.00 8.52 C
ATOM 14 N1 U B 5 -6.850 -0.601 -0.393 1.00 8.78 N
ATOM 15 C2 U B 5 -6.227 0.327 0.416 1.00 8.46 C
ATOM 16 O2 U B 5 -6.547 1.499 0.443 1.00 9.25 O
ATOM 17 N3 U B 5 -5.216 -0.170 1.194 1.00 7.69 N
ATOM 18 C4 U B 5 -4.775 -1.476 1.249 1.00 7.97 C
ATOM 19 O4 U B 5 -3.818 -1.757 1.969 1.00 8.62 O
ATOM 20 C5 U B 5 -5.481 -2.382 0.398 1.00 7.21 C
ATOM 21 C6 U B 5 -6.470 -1.927 -0.374 1.00 7.50 C
ATOM 22 P U B 6 -5.835 0.256 -5.479 1.00 8.84 P
ATOM 23 OP1 U B 6 -5.863 -0.048 -6.918 1.00 11.14 O
ATOM 24 OP2 U B 6 -4.719 -0.231 -4.657 1.00 8.96 O
ATOM 25 O5' U B 6 -5.889 1.838 -5.323 1.00 9.71 O
TER
Atoms:
C4: (-3.217,4.013,-1.015)
N3: (-3.364,5.336,-1.359)
OP1: (-5.863,-0.048,-6.918)
OP2: (-4.719,-0.231,-4.657)
C2: (-4.190,5.852,-2.324)
C1': (-5.828,5.434,-4.063)
C3': (-5.123,4.507,-6.108)
O5': (-5.889,1.838,-5.323)
O4': (-6.738,4.407,-4.432)
C5': (-6.833,2.614,-6.046)
P: (-5.835,0.256,-5.479)
C4': (-6.554,4.078,-5.837)
C2': (-5.056,5.812,-5.327)
O2': (-5.741,6.868,-5.964)
N1: (-4.940,4.927,-3.006)
O4: (-2.401,3.702,-0.145)
O2: (-4.251,7.043,-2.554)
C6: (-4.849,3.588,-2.711)
C5: (-4.034,3.111,-1.765)
O3': (-4.889,4.678,-7.502)
N3: (-3.364,5.336,-1.359)
OP1: (-5.863,-0.048,-6.918)
OP2: (-4.719,-0.231,-4.657)
C2: (-4.190,5.852,-2.324)
C1': (-5.828,5.434,-4.063)
C3': (-5.123,4.507,-6.108)
O5': (-5.889,1.838,-5.323)
O4': (-6.738,4.407,-4.432)
C5': (-6.833,2.614,-6.046)
P: (-5.835,0.256,-5.479)
C4': (-6.554,4.078,-5.837)
C2': (-5.056,5.812,-5.327)
O2': (-5.741,6.868,-5.964)
N1: (-4.940,4.927,-3.006)
O4: (-2.401,3.702,-0.145)
O2: (-4.251,7.043,-2.554)
C6: (-4.849,3.588,-2.711)
C5: (-4.034,3.111,-1.765)
O3': (-4.889,4.678,-7.502)
C4: (-4.775,-1.476,1.249)
N3: (-5.216,-0.170,1.194)
OP1: (-7.655,-5.447,-4.703)
OP2: (-6.047,-5.469,-2.717)
C2: (-6.227,0.327,0.416)
C1': (-7.912,-0.114,-1.285)
C3': (-7.266,-0.634,-3.487)
O5': (-7.461,-3.492,-3.152)
O4': (-8.675,-1.224,-1.727)
C5': (-8.641,-2.805,-3.570)
P: (-7.338,-5.073,-3.305)
C4': (-8.569,-1.347,-3.168)
C2': (-7.333,0.550,-2.537)
O2': (-8.205,1.560,-3.003)
N1: (-6.850,-0.601,-0.393)
O4: (-3.818,-1.757,1.969)
O2: (-6.547,1.499,0.443)
C6: (-6.470,-1.927,-0.374)
C5: (-5.481,-2.382,0.398)
O3': (-7.222,-0.222,-4.843)
N3: (-5.216,-0.170,1.194)
OP1: (-7.655,-5.447,-4.703)
OP2: (-6.047,-5.469,-2.717)
C2: (-6.227,0.327,0.416)
C1': (-7.912,-0.114,-1.285)
C3': (-7.266,-0.634,-3.487)
O5': (-7.461,-3.492,-3.152)
O4': (-8.675,-1.224,-1.727)
C5': (-8.641,-2.805,-3.570)
P: (-7.338,-5.073,-3.305)
C4': (-8.569,-1.347,-3.168)
C2': (-7.333,0.550,-2.537)
O2': (-8.205,1.560,-3.003)
N1: (-6.850,-0.601,-0.393)
O4: (-3.818,-1.757,1.969)
O2: (-6.547,1.499,0.443)
C6: (-6.470,-1.927,-0.374)
C5: (-5.481,-2.382,0.398)
O3': (-7.222,-0.222,-4.843)
Image (generated by PyMOL):