Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NPQ:A39:A33
Extra
PDB:
ATOM 1 P A A 39 29.532 -16.424 -4.297 1.00 63.08 P
ATOM 2 OP1 A A 39 29.544 -15.218 -5.158 1.00 61.24 O
ATOM 3 OP2 A A 39 28.953 -16.457 -2.932 1.00 72.65 O
ATOM 4 O5' A A 39 30.915 -17.232 -4.345 1.00 57.73 O
ATOM 5 C5' A A 39 30.972 -18.483 -3.669 1.00 61.99 C
ATOM 6 C4' A A 39 31.884 -19.464 -4.380 1.00 67.73 C
ATOM 7 O4' A A 39 33.241 -18.954 -4.371 1.00 71.43 O
ATOM 8 C3' A A 39 31.960 -20.840 -3.730 1.00 61.61 C
ATOM 9 O3' A A 39 30.996 -21.708 -4.308 1.00 61.57 O
ATOM 10 C2' A A 39 33.380 -21.278 -4.065 1.00 68.16 C
ATOM 11 O2' A A 39 33.499 -21.771 -5.385 1.00 71.05 O
ATOM 12 C1' A A 39 34.127 -19.959 -3.920 1.00 69.83 C
ATOM 13 N9 A A 39 34.486 -19.662 -2.539 1.00 59.88 N
ATOM 14 C8 A A 39 33.832 -18.828 -1.675 1.00 52.86 C
ATOM 15 N7 A A 39 34.384 -18.756 -0.488 1.00 47.66 N
ATOM 16 C5 A A 39 35.475 -19.603 -0.578 1.00 53.14 C
ATOM 17 C6 A A 39 36.470 -19.967 0.348 1.00 53.37 C
ATOM 18 N6 A A 39 36.523 -19.497 1.599 1.00 51.15 N
ATOM 19 N1 A A 39 37.414 -20.835 -0.065 1.00 58.15 N
ATOM 20 C2 A A 39 37.362 -21.305 -1.316 1.00 61.03 C
ATOM 21 N3 A A 39 36.478 -21.037 -2.275 1.00 55.62 N
ATOM 22 C4 A A 39 35.553 -20.171 -1.835 1.00 55.26 C
ATOM 23 P A A 40 30.120 -22.653 -3.361 1.00 61.43 P
ATOM 24 OP1 A A 40 28.979 -23.160 -4.157 1.00 66.55 O
ATOM 25 OP2 A A 40 29.875 -21.924 -2.097 1.00 55.26 O
ATOM 26 O5' A A 40 31.111 -23.868 -3.043 1.00 49.24 O
TER
ATOM 1 O3' U B 32 38.909 -26.916 6.530 1.00 50.80 O
ATOM 2 P C B 33 40.440 -26.525 6.279 1.00 42.43 P
ATOM 3 OP1 C B 33 41.148 -27.735 5.806 1.00 51.52 O
ATOM 4 OP2 C B 33 40.929 -25.800 7.473 1.00 38.66 O
ATOM 5 O5' C B 33 40.341 -25.478 5.075 1.00 39.40 O
ATOM 6 C5' C B 33 39.758 -25.878 3.843 1.00 40.31 C
ATOM 7 C4' C B 33 39.306 -24.670 3.046 1.00 32.16 C
ATOM 8 O4' C B 33 38.311 -23.933 3.801 1.00 37.22 O
ATOM 9 C3' C B 33 40.386 -23.639 2.762 1.00 36.56 C
ATOM 10 O3' C B 33 41.157 -24.022 1.630 1.00 40.49 O
ATOM 11 C2' C B 33 39.524 -22.420 2.461 1.00 30.99 C
ATOM 12 O2' C B 33 38.968 -22.479 1.164 1.00 33.66 O
ATOM 13 C1' C B 33 38.429 -22.552 3.512 1.00 31.76 C
ATOM 14 N1 C B 33 38.729 -21.808 4.769 1.00 29.51 N
ATOM 15 C2 C B 33 38.539 -20.423 4.809 1.00 22.10 C
ATOM 16 O2 C B 33 38.126 -19.843 3.798 1.00 23.41 O
ATOM 17 N3 C B 33 38.815 -19.754 5.955 1.00 19.50 N
ATOM 18 C4 C B 33 39.261 -20.416 7.024 1.00 20.39 C
ATOM 19 N4 C B 33 39.519 -19.713 8.131 1.00 22.74 N
ATOM 20 C5 C B 33 39.461 -21.828 7.003 1.00 21.17 C
ATOM 21 C6 C B 33 39.185 -22.477 5.867 1.00 25.35 C
ATOM 22 P G B 34 42.700 -23.607 1.528 1.00 46.36 P
ATOM 23 OP1 G B 34 43.414 -24.680 0.802 1.00 63.04 O
ATOM 24 OP2 G B 34 43.147 -23.208 2.882 1.00 44.18 O
ATOM 25 O5' G B 34 42.668 -22.291 0.619 1.00 41.14 O
TER
ATOM 2 OP1 A A 39 29.544 -15.218 -5.158 1.00 61.24 O
ATOM 3 OP2 A A 39 28.953 -16.457 -2.932 1.00 72.65 O
ATOM 4 O5' A A 39 30.915 -17.232 -4.345 1.00 57.73 O
ATOM 5 C5' A A 39 30.972 -18.483 -3.669 1.00 61.99 C
ATOM 6 C4' A A 39 31.884 -19.464 -4.380 1.00 67.73 C
ATOM 7 O4' A A 39 33.241 -18.954 -4.371 1.00 71.43 O
ATOM 8 C3' A A 39 31.960 -20.840 -3.730 1.00 61.61 C
ATOM 9 O3' A A 39 30.996 -21.708 -4.308 1.00 61.57 O
ATOM 10 C2' A A 39 33.380 -21.278 -4.065 1.00 68.16 C
ATOM 11 O2' A A 39 33.499 -21.771 -5.385 1.00 71.05 O
ATOM 12 C1' A A 39 34.127 -19.959 -3.920 1.00 69.83 C
ATOM 13 N9 A A 39 34.486 -19.662 -2.539 1.00 59.88 N
ATOM 14 C8 A A 39 33.832 -18.828 -1.675 1.00 52.86 C
ATOM 15 N7 A A 39 34.384 -18.756 -0.488 1.00 47.66 N
ATOM 16 C5 A A 39 35.475 -19.603 -0.578 1.00 53.14 C
ATOM 17 C6 A A 39 36.470 -19.967 0.348 1.00 53.37 C
ATOM 18 N6 A A 39 36.523 -19.497 1.599 1.00 51.15 N
ATOM 19 N1 A A 39 37.414 -20.835 -0.065 1.00 58.15 N
ATOM 20 C2 A A 39 37.362 -21.305 -1.316 1.00 61.03 C
ATOM 21 N3 A A 39 36.478 -21.037 -2.275 1.00 55.62 N
ATOM 22 C4 A A 39 35.553 -20.171 -1.835 1.00 55.26 C
ATOM 23 P A A 40 30.120 -22.653 -3.361 1.00 61.43 P
ATOM 24 OP1 A A 40 28.979 -23.160 -4.157 1.00 66.55 O
ATOM 25 OP2 A A 40 29.875 -21.924 -2.097 1.00 55.26 O
ATOM 26 O5' A A 40 31.111 -23.868 -3.043 1.00 49.24 O
TER
ATOM 1 O3' U B 32 38.909 -26.916 6.530 1.00 50.80 O
ATOM 2 P C B 33 40.440 -26.525 6.279 1.00 42.43 P
ATOM 3 OP1 C B 33 41.148 -27.735 5.806 1.00 51.52 O
ATOM 4 OP2 C B 33 40.929 -25.800 7.473 1.00 38.66 O
ATOM 5 O5' C B 33 40.341 -25.478 5.075 1.00 39.40 O
ATOM 6 C5' C B 33 39.758 -25.878 3.843 1.00 40.31 C
ATOM 7 C4' C B 33 39.306 -24.670 3.046 1.00 32.16 C
ATOM 8 O4' C B 33 38.311 -23.933 3.801 1.00 37.22 O
ATOM 9 C3' C B 33 40.386 -23.639 2.762 1.00 36.56 C
ATOM 10 O3' C B 33 41.157 -24.022 1.630 1.00 40.49 O
ATOM 11 C2' C B 33 39.524 -22.420 2.461 1.00 30.99 C
ATOM 12 O2' C B 33 38.968 -22.479 1.164 1.00 33.66 O
ATOM 13 C1' C B 33 38.429 -22.552 3.512 1.00 31.76 C
ATOM 14 N1 C B 33 38.729 -21.808 4.769 1.00 29.51 N
ATOM 15 C2 C B 33 38.539 -20.423 4.809 1.00 22.10 C
ATOM 16 O2 C B 33 38.126 -19.843 3.798 1.00 23.41 O
ATOM 17 N3 C B 33 38.815 -19.754 5.955 1.00 19.50 N
ATOM 18 C4 C B 33 39.261 -20.416 7.024 1.00 20.39 C
ATOM 19 N4 C B 33 39.519 -19.713 8.131 1.00 22.74 N
ATOM 20 C5 C B 33 39.461 -21.828 7.003 1.00 21.17 C
ATOM 21 C6 C B 33 39.185 -22.477 5.867 1.00 25.35 C
ATOM 22 P G B 34 42.700 -23.607 1.528 1.00 46.36 P
ATOM 23 OP1 G B 34 43.414 -24.680 0.802 1.00 63.04 O
ATOM 24 OP2 G B 34 43.147 -23.208 2.882 1.00 44.18 O
ATOM 25 O5' G B 34 42.668 -22.291 0.619 1.00 41.14 O
TER
Atoms:
OP1: (29.544,-15.218,-5.158)
OP2: (28.953,-16.457,-2.932)
C3': (31.960,-20.840,-3.730)
C1': (34.127,-19.959,-3.920)
C5': (30.972,-18.483,-3.669)
O4': (33.241,-18.954,-4.371)
C8: (33.832,-18.828,-1.675)
O2': (33.499,-21.771,-5.385)
C6: (36.470,-19.967,0.348)
C5: (35.475,-19.603,-0.578)
C4: (35.553,-20.171,-1.835)
P: (29.532,-16.424,-4.297)
C4': (31.884,-19.464,-4.380)
C2': (33.380,-21.278,-4.065)
C2: (37.362,-21.305,-1.316)
N1: (37.414,-20.835,-0.065)
N3: (36.478,-21.037,-2.275)
N6: (36.523,-19.497,1.599)
N7: (34.384,-18.756,-0.488)
N9: (34.486,-19.662,-2.539)
O5': (30.915,-17.232,-4.345)
O3': (30.996,-21.708,-4.308)
OP2: (28.953,-16.457,-2.932)
C3': (31.960,-20.840,-3.730)
C1': (34.127,-19.959,-3.920)
C5': (30.972,-18.483,-3.669)
O4': (33.241,-18.954,-4.371)
C8: (33.832,-18.828,-1.675)
O2': (33.499,-21.771,-5.385)
C6: (36.470,-19.967,0.348)
C5: (35.475,-19.603,-0.578)
C4: (35.553,-20.171,-1.835)
P: (29.532,-16.424,-4.297)
C4': (31.884,-19.464,-4.380)
C2': (33.380,-21.278,-4.065)
C2: (37.362,-21.305,-1.316)
N1: (37.414,-20.835,-0.065)
N3: (36.478,-21.037,-2.275)
N6: (36.523,-19.497,1.599)
N7: (34.384,-18.756,-0.488)
N9: (34.486,-19.662,-2.539)
O5': (30.915,-17.232,-4.345)
O3': (30.996,-21.708,-4.308)
C2: (38.539,-20.423,4.809)
OP1: (41.148,-27.735,5.806)
OP2: (40.929,-25.800,7.473)
C4: (39.261,-20.416,7.024)
O5': (40.341,-25.478,5.075)
C3': (40.386,-23.639,2.762)
C1': (38.429,-22.552,3.512)
O4': (38.311,-23.933,3.801)
C5': (39.758,-25.878,3.843)
P: (40.440,-26.525,6.279)
O2: (38.126,-19.843,3.798)
C4': (39.306,-24.670,3.046)
C2': (39.524,-22.420,2.461)
O2': (38.968,-22.479,1.164)
N1: (38.729,-21.808,4.769)
N3: (38.815,-19.754,5.955)
N4: (39.519,-19.713,8.131)
C6: (39.185,-22.477,5.867)
C5: (39.461,-21.828,7.003)
O3': (41.157,-24.022,1.630)
OP1: (41.148,-27.735,5.806)
OP2: (40.929,-25.800,7.473)
C4: (39.261,-20.416,7.024)
O5': (40.341,-25.478,5.075)
C3': (40.386,-23.639,2.762)
C1': (38.429,-22.552,3.512)
O4': (38.311,-23.933,3.801)
C5': (39.758,-25.878,3.843)
P: (40.440,-26.525,6.279)
O2: (38.126,-19.843,3.798)
C4': (39.306,-24.670,3.046)
C2': (39.524,-22.420,2.461)
O2': (38.968,-22.479,1.164)
N1: (38.729,-21.808,4.769)
N3: (38.815,-19.754,5.955)
N4: (39.519,-19.713,8.131)
C6: (39.185,-22.477,5.867)
C5: (39.461,-21.828,7.003)
O3': (41.157,-24.022,1.630)
Image (generated by PyMOL):