ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1MMS:D43:D44

Extra

PDB:
ATOM 1 O3' G A 42 7.738 6.175 -35.452 1.00 53.14 O
ATOM 2 P U A 43 7.627 5.455 -34.022 1.00 46.64 P
ATOM 3 OP1 U A 43 7.774 6.516 -32.989 1.00 56.93 O
ATOM 4 OP2 U A 43 8.556 4.303 -34.026 1.00 32.38 O
ATOM 5 O5' U A 43 6.124 4.934 -33.989 1.00 26.86 O
ATOM 6 C5' U A 43 5.051 5.877 -33.932 1.00 35.20 C
ATOM 7 C4' U A 43 3.735 5.172 -33.742 1.00 45.98 C
ATOM 8 O4' U A 43 3.308 4.545 -34.978 1.00 50.88 O
ATOM 9 C3' U A 43 3.692 4.055 -32.717 1.00 39.85 C
ATOM 10 O3' U A 43 3.600 4.551 -31.387 1.00 48.03 O
ATOM 11 C2' U A 43 2.457 3.270 -33.154 1.00 40.06 C
ATOM 12 O2' U A 43 1.243 3.843 -32.701 1.00 44.52 O
ATOM 13 C1' U A 43 2.527 3.400 -34.678 1.00 45.26 C
ATOM 14 N1 U A 43 3.134 2.217 -35.313 1.00 38.99 N
ATOM 15 C2 U A 43 2.294 1.148 -35.606 1.00 29.79 C
ATOM 16 O2 U A 43 1.083 1.180 -35.422 1.00 31.88 O
ATOM 17 N3 U A 43 2.920 0.043 -36.124 1.00 17.61 N
ATOM 18 C4 U A 43 4.262 -0.105 -36.384 1.00 31.42 C
ATOM 19 O4 U A 43 4.679 -1.193 -36.785 1.00 23.03 O
ATOM 20 C5 U A 43 5.062 1.053 -36.093 1.00 28.82 C
ATOM 21 C6 U A 43 4.485 2.147 -35.584 1.00 23.80 C
ATOM 22 P A A 44 4.523 3.907 -30.234 1.00 43.63 P
ATOM 23 OP1 A A 44 4.416 4.772 -29.033 1.00 64.56 O
ATOM 24 OP2 A A 44 5.870 3.607 -30.802 1.00 36.61 O
ATOM 25 O5' A A 44 3.794 2.535 -29.896 1.00 28.91 O
TER

ATOM 1 O3' U B 43 3.600 4.551 -31.387 1.00 48.03 O
ATOM 2 P A B 44 4.523 3.907 -30.234 1.00 43.63 P
ATOM 3 OP1 A B 44 4.416 4.772 -29.033 1.00 64.56 O
ATOM 4 OP2 A B 44 5.870 3.607 -30.802 1.00 36.61 O
ATOM 5 O5' A B 44 3.794 2.535 -29.896 1.00 28.91 O
ATOM 6 C5' A B 44 4.511 1.451 -29.281 1.00 29.01 C
ATOM 7 C4' A B 44 3.579 0.291 -29.049 1.00 27.64 C
ATOM 8 O4' A B 44 2.506 0.741 -28.191 1.00 38.10 O
ATOM 9 C3' A B 44 2.890 -0.216 -30.302 1.00 32.19 C
ATOM 10 O3' A B 44 3.698 -1.186 -30.964 1.00 40.82 O
ATOM 11 C2' A B 44 1.575 -0.772 -29.769 1.00 37.08 C
ATOM 12 O2' A B 44 1.705 -2.077 -29.240 1.00 37.59 O
ATOM 13 C1' A B 44 1.278 0.195 -28.623 1.00 27.61 C
ATOM 14 N9 A B 44 0.397 1.313 -28.956 1.00 26.65 N
ATOM 15 C8 A B 44 0.753 2.601 -29.290 1.00 20.45 C
ATOM 16 N7 A B 44 -0.273 3.404 -29.463 1.00 27.16 N
ATOM 17 C5 A B 44 -1.376 2.587 -29.246 1.00 16.61 C
ATOM 18 C6 A B 44 -2.765 2.837 -29.271 1.00 25.70 C
ATOM 19 N6 A B 44 -3.303 4.034 -29.520 1.00 29.59 N
ATOM 20 N1 A B 44 -3.596 1.799 -29.023 1.00 28.34 N
ATOM 21 C2 A B 44 -3.060 0.599 -28.761 1.00 25.38 C
ATOM 22 N3 A B 44 -1.775 0.240 -28.702 1.00 28.20 N
ATOM 23 C4 A B 44 -0.977 1.292 -28.955 1.00 21.18 C
ATOM 24 P A B 45 3.829 -1.151 -32.569 1.00 34.70 P
ATOM 25 OP1 A B 45 4.838 -2.167 -32.962 1.00 24.34 O
ATOM 26 OP2 A B 45 4.017 0.256 -32.992 1.00 37.33 O
ATOM 27 O5' A B 45 2.383 -1.617 -33.047 1.00 20.77 O
TER

Atoms:
C4: (4.262,-0.105,-36.384)
N3: (2.920,0.043,-36.124)
OP1: (7.774,6.516,-32.989)
OP2: (8.556,4.303,-34.026)
C2: (2.294,1.148,-35.606)
C1': (2.527,3.400,-34.678)
C3': (3.692,4.055,-32.717)
O5': (6.124,4.934,-33.989)
O4': (3.308,4.545,-34.978)
C5': (5.051,5.877,-33.932)
P: (7.627,5.455,-34.022)
C4': (3.735,5.172,-33.742)
C2': (2.457,3.270,-33.154)
O2': (1.243,3.843,-32.701)
N1: (3.134,2.217,-35.313)
O4: (4.679,-1.193,-36.785)
O2: (1.083,1.180,-35.422)
C6: (4.485,2.147,-35.584)
C5: (5.062,1.053,-36.093)
O3': (3.600,4.551,-31.387)
OP1: (4.416,4.772,-29.033)
OP2: (5.870,3.607,-30.802)
C3': (2.890,-0.216,-30.302)
C1': (1.278,0.195,-28.623)
C5': (4.511,1.451,-29.281)
O4': (2.506,0.741,-28.191)
C8: (0.753,2.601,-29.290)
O2': (1.705,-2.077,-29.240)
C6: (-2.765,2.837,-29.271)
C5: (-1.376,2.587,-29.246)
C4: (-0.977,1.292,-28.955)
P: (4.523,3.907,-30.234)
C4': (3.579,0.291,-29.049)
C2': (1.575,-0.772,-29.769)
C2: (-3.060,0.599,-28.761)
N1: (-3.596,1.799,-29.023)
N3: (-1.775,0.240,-28.702)
N6: (-3.303,4.034,-29.520)
N7: (-0.273,3.404,-29.463)
N9: (0.397,1.313,-28.956)
O5': (3.794,2.535,-29.896)
O3': (3.698,-1.186,-30.964)
Image (generated by PyMOL):
PyMOL image
show in jmol