Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X58:X59
Extra
PDB:
ATOM 1 O3' A A 57 -13.286 -29.796 10.186 1.00 35.34 O
ATOM 2 P U A 58 -12.435 -29.672 11.535 1.00 34.88 P
ATOM 3 OP1 U A 58 -11.284 -30.597 11.430 1.00 34.56 O
ATOM 4 OP2 U A 58 -13.364 -29.769 12.682 1.00 34.69 O
ATOM 5 O5' U A 58 -11.905 -28.165 11.465 1.00 35.09 O
ATOM 6 C5' U A 58 -10.926 -27.800 10.502 1.00 34.92 C
ATOM 7 C4' U A 58 -10.788 -26.291 10.447 1.00 34.46 C
ATOM 8 O4' U A 58 -12.103 -25.688 10.361 1.00 34.48 O
ATOM 9 C3' U A 58 -10.203 -25.657 11.697 1.00 34.45 C
ATOM 10 O3' U A 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 11 C2' U A 58 -10.664 -24.211 11.535 1.00 33.76 C
ATOM 12 O2' U A 58 -9.834 -23.474 10.661 1.00 34.27 O
ATOM 13 C1' U A 58 -12.057 -24.390 10.928 1.00 33.34 C
ATOM 14 N1 U A 58 -13.143 -24.275 11.941 1.00 32.24 N
ATOM 15 C2 U A 58 -13.554 -23.020 12.344 1.00 31.52 C
ATOM 16 O2 U A 58 -13.085 -21.987 11.903 1.00 32.81 O
ATOM 17 N3 U A 58 -14.547 -23.015 13.287 1.00 30.48 N
ATOM 18 C4 U A 58 -15.155 -24.116 13.863 1.00 30.09 C
ATOM 19 O4 U A 58 -16.034 -23.950 14.698 1.00 28.61 O
ATOM 20 C5 U A 58 -14.670 -25.391 13.398 1.00 30.53 C
ATOM 21 C6 U A 58 -13.704 -25.420 12.474 1.00 31.59 C
ATOM 22 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 23 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 24 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 25 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
TER
ATOM 1 O3' U B 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A B 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A B 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A B 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A B 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A B 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A B 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A B 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A B 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A B 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A B 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A B 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A B 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A B 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A B 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A B 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A B 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A B 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A B 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A B 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A B 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A B 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
ATOM 2 P U A 58 -12.435 -29.672 11.535 1.00 34.88 P
ATOM 3 OP1 U A 58 -11.284 -30.597 11.430 1.00 34.56 O
ATOM 4 OP2 U A 58 -13.364 -29.769 12.682 1.00 34.69 O
ATOM 5 O5' U A 58 -11.905 -28.165 11.465 1.00 35.09 O
ATOM 6 C5' U A 58 -10.926 -27.800 10.502 1.00 34.92 C
ATOM 7 C4' U A 58 -10.788 -26.291 10.447 1.00 34.46 C
ATOM 8 O4' U A 58 -12.103 -25.688 10.361 1.00 34.48 O
ATOM 9 C3' U A 58 -10.203 -25.657 11.697 1.00 34.45 C
ATOM 10 O3' U A 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 11 C2' U A 58 -10.664 -24.211 11.535 1.00 33.76 C
ATOM 12 O2' U A 58 -9.834 -23.474 10.661 1.00 34.27 O
ATOM 13 C1' U A 58 -12.057 -24.390 10.928 1.00 33.34 C
ATOM 14 N1 U A 58 -13.143 -24.275 11.941 1.00 32.24 N
ATOM 15 C2 U A 58 -13.554 -23.020 12.344 1.00 31.52 C
ATOM 16 O2 U A 58 -13.085 -21.987 11.903 1.00 32.81 O
ATOM 17 N3 U A 58 -14.547 -23.015 13.287 1.00 30.48 N
ATOM 18 C4 U A 58 -15.155 -24.116 13.863 1.00 30.09 C
ATOM 19 O4 U A 58 -16.034 -23.950 14.698 1.00 28.61 O
ATOM 20 C5 U A 58 -14.670 -25.391 13.398 1.00 30.53 C
ATOM 21 C6 U A 58 -13.704 -25.420 12.474 1.00 31.59 C
ATOM 22 P A A 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 23 OP1 A A 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 24 OP2 A A 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 25 O5' A A 59 -8.085 -24.839 13.907 1.00 32.41 O
TER
ATOM 1 O3' U B 58 -8.785 -25.780 11.713 1.00 34.18 O
ATOM 2 P A B 59 -8.067 -26.205 13.078 1.00 34.53 P
ATOM 3 OP1 A B 59 -6.663 -26.569 12.780 1.00 34.89 O
ATOM 4 OP2 A B 59 -8.948 -27.173 13.771 1.00 34.83 O
ATOM 5 O5' A B 59 -8.085 -24.839 13.907 1.00 32.41 O
ATOM 6 C5' A B 59 -7.909 -24.841 15.315 1.00 30.38 C
ATOM 7 C4' A B 59 -7.954 -23.416 15.831 1.00 29.24 C
ATOM 8 O4' A B 59 -6.813 -22.692 15.311 1.00 28.36 O
ATOM 9 C3' A B 59 -9.165 -22.624 15.365 1.00 28.80 C
ATOM 10 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 11 C2' A B 59 -8.652 -21.185 15.360 1.00 28.21 C
ATOM 12 O2' A B 59 -8.708 -20.589 16.641 1.00 27.47 O
ATOM 13 C1' A B 59 -7.193 -21.371 14.967 1.00 27.79 C
ATOM 14 N9 A B 59 -6.867 -21.132 13.563 1.00 27.32 N
ATOM 15 C8 A B 59 -6.420 -22.067 12.670 1.00 27.80 C
ATOM 16 N7 A B 59 -6.164 -21.585 11.479 1.00 27.63 N
ATOM 17 C5 A B 59 -6.448 -20.234 11.600 1.00 26.98 C
ATOM 18 C6 A B 59 -6.368 -19.170 10.681 1.00 26.06 C
ATOM 19 N6 A B 59 -5.965 -19.328 9.414 1.00 25.51 N
ATOM 20 N1 A B 59 -6.732 -17.944 11.112 1.00 25.90 N
ATOM 21 C2 A B 59 -7.128 -17.799 12.384 1.00 27.16 C
ATOM 22 N3 A B 59 -7.237 -18.723 13.342 1.00 27.15 N
ATOM 23 C4 A B 59 -6.876 -19.934 12.882 1.00 27.12 C
ATOM 24 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 25 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 26 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 27 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
TER
Atoms:
C4: (-15.155,-24.116,13.863)
N3: (-14.547,-23.015,13.287)
OP1: (-11.284,-30.597,11.430)
OP2: (-13.364,-29.769,12.682)
C2: (-13.554,-23.020,12.344)
C1': (-12.057,-24.390,10.928)
C3': (-10.203,-25.657,11.697)
O5': (-11.905,-28.165,11.465)
O4': (-12.103,-25.688,10.361)
C5': (-10.926,-27.800,10.502)
P: (-12.435,-29.672,11.535)
C4': (-10.788,-26.291,10.447)
C2': (-10.664,-24.211,11.535)
O2': (-9.834,-23.474,10.661)
N1: (-13.143,-24.275,11.941)
O4: (-16.034,-23.950,14.698)
O2: (-13.085,-21.987,11.903)
C6: (-13.704,-25.420,12.474)
C5: (-14.670,-25.391,13.398)
O3': (-8.785,-25.780,11.713)
N3: (-14.547,-23.015,13.287)
OP1: (-11.284,-30.597,11.430)
OP2: (-13.364,-29.769,12.682)
C2: (-13.554,-23.020,12.344)
C1': (-12.057,-24.390,10.928)
C3': (-10.203,-25.657,11.697)
O5': (-11.905,-28.165,11.465)
O4': (-12.103,-25.688,10.361)
C5': (-10.926,-27.800,10.502)
P: (-12.435,-29.672,11.535)
C4': (-10.788,-26.291,10.447)
C2': (-10.664,-24.211,11.535)
O2': (-9.834,-23.474,10.661)
N1: (-13.143,-24.275,11.941)
O4: (-16.034,-23.950,14.698)
O2: (-13.085,-21.987,11.903)
C6: (-13.704,-25.420,12.474)
C5: (-14.670,-25.391,13.398)
O3': (-8.785,-25.780,11.713)
OP1: (-6.663,-26.569,12.780)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
OP2: (-8.948,-27.173,13.771)
C3': (-9.165,-22.624,15.365)
C1': (-7.193,-21.371,14.967)
C5': (-7.909,-24.841,15.315)
O4': (-6.813,-22.692,15.311)
C8: (-6.420,-22.067,12.670)
O2': (-8.708,-20.589,16.641)
C6: (-6.368,-19.170,10.681)
C5: (-6.448,-20.234,11.600)
C4: (-6.876,-19.934,12.882)
P: (-8.067,-26.205,13.078)
C4': (-7.954,-23.416,15.831)
C2': (-8.652,-21.185,15.360)
C2: (-7.128,-17.799,12.384)
N1: (-6.732,-17.944,11.112)
N3: (-7.237,-18.723,13.342)
N6: (-5.965,-19.328,9.414)
N7: (-6.164,-21.585,11.479)
N9: (-6.867,-21.132,13.563)
O5': (-8.085,-24.839,13.907)
O3': (-10.224,-22.796,16.294)
Image (generated by PyMOL):