Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0662:026
Extra
PDB:
ATOM 1 O3' U A 661 34.639 116.087 28.626 1.00 46.69 O
ATOM 2 P A A 662 34.867 116.619 30.130 1.00 47.09 P
ATOM 3 OP1 A A 662 33.591 117.087 30.750 1.00 44.26 O
ATOM 4 OP2 A A 662 36.027 117.547 30.061 1.00 48.33 O
ATOM 5 O5' A A 662 35.334 115.311 30.901 1.00 42.12 O
ATOM 6 C5' A A 662 36.262 114.399 30.300 1.00 40.10 C
ATOM 7 C4' A A 662 37.081 113.725 31.367 1.00 39.62 C
ATOM 8 O4' A A 662 37.944 114.717 31.978 1.00 42.07 O
ATOM 9 C3' A A 662 36.277 113.102 32.508 1.00 40.98 C
ATOM 10 O3' A A 662 36.962 111.958 32.997 1.00 40.05 O
ATOM 11 C2' A A 662 36.290 114.202 33.561 1.00 40.11 C
ATOM 12 O2' A A 662 36.170 113.713 34.878 1.00 41.91 O
ATOM 13 C1' A A 662 37.690 114.770 33.367 1.00 41.96 C
ATOM 14 N9 A A 662 37.861 116.144 33.839 1.00 40.07 N
ATOM 15 C8 A A 662 37.106 117.262 33.583 1.00 39.96 C
ATOM 16 N7 A A 662 37.534 118.341 34.194 1.00 38.85 N
ATOM 17 C5 A A 662 38.649 117.904 34.894 1.00 41.12 C
ATOM 18 C6 A A 662 39.555 118.563 35.745 1.00 40.56 C
ATOM 19 N6 A A 662 39.480 119.857 36.050 1.00 41.81 N
ATOM 20 N1 A A 662 40.556 117.834 36.279 1.00 39.26 N
ATOM 21 C2 A A 662 40.636 116.532 35.978 1.00 39.93 C
ATOM 22 N3 A A 662 39.848 115.798 35.197 1.00 40.94 N
ATOM 23 C4 A A 662 38.863 116.553 34.680 1.00 41.23 C
ATOM 24 P U A 663 36.398 110.494 32.663 1.00 41.90 P
ATOM 25 OP1 U A 663 37.234 109.508 33.394 1.00 40.58 O
ATOM 26 OP2 U A 663 36.257 110.383 31.187 1.00 42.10 O
ATOM 27 O5' U A 663 34.940 110.483 33.300 1.00 37.87 O
TER
ATOM 1 O3' U B 25 46.670 120.362 43.471 1.00 29.63 O
ATOM 2 P C B 26 47.371 120.230 42.033 1.00 30.23 P
ATOM 3 OP1 C B 26 48.333 119.099 42.108 1.00 29.35 O
ATOM 4 OP2 C B 26 47.844 121.562 41.595 1.00 30.77 O
ATOM 5 O5' C B 26 46.175 119.831 41.063 1.00 30.11 O
ATOM 6 C5' C B 26 45.519 118.569 41.181 1.00 27.91 C
ATOM 7 C4' C B 26 44.344 118.520 40.249 1.00 30.65 C
ATOM 8 O4' C B 26 43.445 119.622 40.557 1.00 30.81 O
ATOM 9 C3' C B 26 44.645 118.735 38.776 1.00 31.60 C
ATOM 10 O3' C B 26 45.136 117.574 38.135 1.00 34.43 O
ATOM 11 C2' C B 26 43.281 119.137 38.249 1.00 31.36 C
ATOM 12 O2' C B 26 42.391 118.043 38.199 1.00 29.45 O
ATOM 13 C1' C B 26 42.811 120.061 39.366 1.00 31.40 C
ATOM 14 N1 C B 26 43.197 121.457 39.103 1.00 33.85 N
ATOM 15 C2 C B 26 42.381 122.227 38.274 1.00 34.67 C
ATOM 16 O2 C B 26 41.392 121.700 37.748 1.00 36.38 O
ATOM 17 N3 C B 26 42.689 123.526 38.062 1.00 35.61 N
ATOM 18 C4 C B 26 43.766 124.058 38.638 1.00 34.31 C
ATOM 19 N4 C B 26 43.999 125.354 38.436 1.00 33.81 N
ATOM 20 C5 C B 26 44.642 123.287 39.457 1.00 34.70 C
ATOM 21 C6 C B 26 44.323 122.002 39.661 1.00 35.23 C
ATOM 22 P A B 27 46.139 117.726 36.890 1.00 37.51 P
ATOM 23 OP1 A B 27 46.561 116.354 36.522 1.00 37.20 O
ATOM 24 OP2 A B 27 47.166 118.752 37.193 1.00 37.78 O
ATOM 25 O5' A B 27 45.217 118.315 35.734 1.00 39.81 O
TER
ATOM 2 P A A 662 34.867 116.619 30.130 1.00 47.09 P
ATOM 3 OP1 A A 662 33.591 117.087 30.750 1.00 44.26 O
ATOM 4 OP2 A A 662 36.027 117.547 30.061 1.00 48.33 O
ATOM 5 O5' A A 662 35.334 115.311 30.901 1.00 42.12 O
ATOM 6 C5' A A 662 36.262 114.399 30.300 1.00 40.10 C
ATOM 7 C4' A A 662 37.081 113.725 31.367 1.00 39.62 C
ATOM 8 O4' A A 662 37.944 114.717 31.978 1.00 42.07 O
ATOM 9 C3' A A 662 36.277 113.102 32.508 1.00 40.98 C
ATOM 10 O3' A A 662 36.962 111.958 32.997 1.00 40.05 O
ATOM 11 C2' A A 662 36.290 114.202 33.561 1.00 40.11 C
ATOM 12 O2' A A 662 36.170 113.713 34.878 1.00 41.91 O
ATOM 13 C1' A A 662 37.690 114.770 33.367 1.00 41.96 C
ATOM 14 N9 A A 662 37.861 116.144 33.839 1.00 40.07 N
ATOM 15 C8 A A 662 37.106 117.262 33.583 1.00 39.96 C
ATOM 16 N7 A A 662 37.534 118.341 34.194 1.00 38.85 N
ATOM 17 C5 A A 662 38.649 117.904 34.894 1.00 41.12 C
ATOM 18 C6 A A 662 39.555 118.563 35.745 1.00 40.56 C
ATOM 19 N6 A A 662 39.480 119.857 36.050 1.00 41.81 N
ATOM 20 N1 A A 662 40.556 117.834 36.279 1.00 39.26 N
ATOM 21 C2 A A 662 40.636 116.532 35.978 1.00 39.93 C
ATOM 22 N3 A A 662 39.848 115.798 35.197 1.00 40.94 N
ATOM 23 C4 A A 662 38.863 116.553 34.680 1.00 41.23 C
ATOM 24 P U A 663 36.398 110.494 32.663 1.00 41.90 P
ATOM 25 OP1 U A 663 37.234 109.508 33.394 1.00 40.58 O
ATOM 26 OP2 U A 663 36.257 110.383 31.187 1.00 42.10 O
ATOM 27 O5' U A 663 34.940 110.483 33.300 1.00 37.87 O
TER
ATOM 1 O3' U B 25 46.670 120.362 43.471 1.00 29.63 O
ATOM 2 P C B 26 47.371 120.230 42.033 1.00 30.23 P
ATOM 3 OP1 C B 26 48.333 119.099 42.108 1.00 29.35 O
ATOM 4 OP2 C B 26 47.844 121.562 41.595 1.00 30.77 O
ATOM 5 O5' C B 26 46.175 119.831 41.063 1.00 30.11 O
ATOM 6 C5' C B 26 45.519 118.569 41.181 1.00 27.91 C
ATOM 7 C4' C B 26 44.344 118.520 40.249 1.00 30.65 C
ATOM 8 O4' C B 26 43.445 119.622 40.557 1.00 30.81 O
ATOM 9 C3' C B 26 44.645 118.735 38.776 1.00 31.60 C
ATOM 10 O3' C B 26 45.136 117.574 38.135 1.00 34.43 O
ATOM 11 C2' C B 26 43.281 119.137 38.249 1.00 31.36 C
ATOM 12 O2' C B 26 42.391 118.043 38.199 1.00 29.45 O
ATOM 13 C1' C B 26 42.811 120.061 39.366 1.00 31.40 C
ATOM 14 N1 C B 26 43.197 121.457 39.103 1.00 33.85 N
ATOM 15 C2 C B 26 42.381 122.227 38.274 1.00 34.67 C
ATOM 16 O2 C B 26 41.392 121.700 37.748 1.00 36.38 O
ATOM 17 N3 C B 26 42.689 123.526 38.062 1.00 35.61 N
ATOM 18 C4 C B 26 43.766 124.058 38.638 1.00 34.31 C
ATOM 19 N4 C B 26 43.999 125.354 38.436 1.00 33.81 N
ATOM 20 C5 C B 26 44.642 123.287 39.457 1.00 34.70 C
ATOM 21 C6 C B 26 44.323 122.002 39.661 1.00 35.23 C
ATOM 22 P A B 27 46.139 117.726 36.890 1.00 37.51 P
ATOM 23 OP1 A B 27 46.561 116.354 36.522 1.00 37.20 O
ATOM 24 OP2 A B 27 47.166 118.752 37.193 1.00 37.78 O
ATOM 25 O5' A B 27 45.217 118.315 35.734 1.00 39.81 O
TER
Atoms:
OP1: (33.591,117.087,30.750)
OP2: (36.027,117.547,30.061)
C3': (36.277,113.102,32.508)
C1': (37.690,114.770,33.367)
C5': (36.262,114.399,30.300)
O4': (37.944,114.717,31.978)
C8: (37.106,117.262,33.583)
O2': (36.170,113.713,34.878)
C6: (39.555,118.563,35.745)
C5: (38.649,117.904,34.894)
C4: (38.863,116.553,34.680)
P: (34.867,116.619,30.130)
C4': (37.081,113.725,31.367)
C2': (36.290,114.202,33.561)
C2: (40.636,116.532,35.978)
N1: (40.556,117.834,36.279)
N3: (39.848,115.798,35.197)
N6: (39.480,119.857,36.050)
N7: (37.534,118.341,34.194)
N9: (37.861,116.144,33.839)
O5': (35.334,115.311,30.901)
O3': (36.962,111.958,32.997)
OP2: (36.027,117.547,30.061)
C3': (36.277,113.102,32.508)
C1': (37.690,114.770,33.367)
C5': (36.262,114.399,30.300)
O4': (37.944,114.717,31.978)
C8: (37.106,117.262,33.583)
O2': (36.170,113.713,34.878)
C6: (39.555,118.563,35.745)
C5: (38.649,117.904,34.894)
C4: (38.863,116.553,34.680)
P: (34.867,116.619,30.130)
C4': (37.081,113.725,31.367)
C2': (36.290,114.202,33.561)
C2: (40.636,116.532,35.978)
N1: (40.556,117.834,36.279)
N3: (39.848,115.798,35.197)
N6: (39.480,119.857,36.050)
N7: (37.534,118.341,34.194)
N9: (37.861,116.144,33.839)
O5': (35.334,115.311,30.901)
O3': (36.962,111.958,32.997)
C2: (42.381,122.227,38.274)
OP1: (48.333,119.099,42.108)
OP2: (47.844,121.562,41.595)
C4: (43.766,124.058,38.638)
O5': (46.175,119.831,41.063)
C3': (44.645,118.735,38.776)
C1': (42.811,120.061,39.366)
O4': (43.445,119.622,40.557)
C5': (45.519,118.569,41.181)
P: (47.371,120.230,42.033)
O2: (41.392,121.700,37.748)
C4': (44.344,118.520,40.249)
C2': (43.281,119.137,38.249)
O2': (42.391,118.043,38.199)
N1: (43.197,121.457,39.103)
N3: (42.689,123.526,38.062)
N4: (43.999,125.354,38.436)
C6: (44.323,122.002,39.661)
C5: (44.642,123.287,39.457)
O3': (45.136,117.574,38.135)
OP1: (48.333,119.099,42.108)
OP2: (47.844,121.562,41.595)
C4: (43.766,124.058,38.638)
O5': (46.175,119.831,41.063)
C3': (44.645,118.735,38.776)
C1': (42.811,120.061,39.366)
O4': (43.445,119.622,40.557)
C5': (45.519,118.569,41.181)
P: (47.371,120.230,42.033)
O2: (41.392,121.700,37.748)
C4': (44.344,118.520,40.249)
C2': (43.281,119.137,38.249)
O2': (42.391,118.043,38.199)
N1: (43.197,121.457,39.103)
N3: (42.689,123.526,38.062)
N4: (43.999,125.354,38.436)
C6: (44.323,122.002,39.661)
C5: (44.642,123.287,39.457)
O3': (45.136,117.574,38.135)
Image (generated by PyMOL):