Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A500:A501
Extra
PDB:
ATOM 1 O3' A A 499 23.664 152.115 62.602 1.00 57.28 O
ATOM 2 P G A 500 23.853 153.465 63.442 1.00 55.81 P
ATOM 3 OP1 G A 500 24.997 153.239 64.352 1.00 56.82 O
ATOM 4 OP2 G A 500 22.534 153.861 64.009 1.00 55.23 O
ATOM 5 O5' G A 500 24.282 154.543 62.353 1.00 54.07 O
ATOM 6 C5' G A 500 25.488 154.390 61.609 1.00 54.59 C
ATOM 7 C4' G A 500 26.231 155.692 61.569 1.00 56.39 C
ATOM 8 O4' G A 500 25.420 156.675 60.882 1.00 57.59 O
ATOM 9 C3' G A 500 26.562 156.298 62.926 1.00 58.03 C
ATOM 10 O3' G A 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 11 C2' G A 500 25.444 157.304 63.138 1.00 58.22 C
ATOM 12 O2' G A 500 25.824 158.380 63.974 1.00 57.35 O
ATOM 13 C1' G A 500 25.250 157.803 61.714 1.00 59.08 C
ATOM 14 N9 G A 500 23.947 158.397 61.443 1.00 59.74 N
ATOM 15 C8 G A 500 22.857 158.465 62.280 1.00 59.62 C
ATOM 16 N7 G A 500 21.857 159.119 61.757 1.00 60.71 N
ATOM 17 C5 G A 500 22.309 159.488 60.496 1.00 60.15 C
ATOM 18 C6 G A 500 21.669 160.230 59.463 1.00 59.83 C
ATOM 19 O6 G A 500 20.535 160.721 59.452 1.00 60.18 O
ATOM 20 N1 G A 500 22.497 160.384 58.357 1.00 59.74 N
ATOM 21 C2 G A 500 23.777 159.902 58.257 1.00 60.04 C
ATOM 22 N2 G A 500 24.440 160.199 57.128 1.00 60.96 N
ATOM 23 N3 G A 500 24.375 159.196 59.199 1.00 59.90 N
ATOM 24 C4 G A 500 23.591 159.037 60.285 1.00 59.51 C
ATOM 25 P A A 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 26 OP1 A A 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 27 OP2 A A 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 28 O5' A A 501 30.122 156.154 62.965 1.00 61.01 O
TER
ATOM 1 O3' G B 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 2 P A B 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 3 OP1 A B 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 4 OP2 A B 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 5 O5' A B 501 30.122 156.154 62.965 1.00 61.01 O
ATOM 6 C5' A B 501 30.023 154.844 62.419 1.00 64.00 C
ATOM 7 C4' A B 501 30.729 154.803 61.105 1.00 66.73 C
ATOM 8 O4' A B 501 29.943 155.537 60.132 1.00 68.17 O
ATOM 9 C3' A B 501 32.104 155.441 61.127 1.00 69.05 C
ATOM 10 O3' A B 501 32.990 154.684 60.353 1.00 72.98 O
ATOM 11 C2' A B 501 31.864 156.826 60.544 1.00 69.64 C
ATOM 12 O2' A B 501 32.964 157.339 59.824 1.00 70.28 O
ATOM 13 C1' A B 501 30.703 156.591 59.587 1.00 69.60 C
ATOM 14 N9 A B 501 29.855 157.785 59.530 1.00 72.06 N
ATOM 15 C8 A B 501 28.948 158.229 60.478 1.00 73.05 C
ATOM 16 N7 A B 501 28.355 159.356 60.159 1.00 73.41 N
ATOM 17 C5 A B 501 28.904 159.678 58.922 1.00 74.09 C
ATOM 18 C6 A B 501 28.699 160.760 58.058 1.00 74.90 C
ATOM 19 N6 A B 501 27.856 161.762 58.320 1.00 74.90 N
ATOM 20 N1 A B 501 29.399 160.782 56.900 1.00 74.95 N
ATOM 21 C2 A B 501 30.250 159.779 56.642 1.00 74.29 C
ATOM 22 N3 A B 501 30.537 158.709 57.379 1.00 73.31 N
ATOM 23 C4 A B 501 29.822 158.716 58.520 1.00 73.22 C
ATOM 24 P G B 502 34.319 154.096 61.037 1.00 76.65 P
ATOM 25 OP1 G B 502 34.074 153.765 62.473 1.00 74.93 O
ATOM 26 OP2 G B 502 35.407 155.048 60.689 1.00 77.14 O
ATOM 27 O5' G B 502 34.550 152.724 60.256 1.00 78.05 O
TER
ATOM 2 P G A 500 23.853 153.465 63.442 1.00 55.81 P
ATOM 3 OP1 G A 500 24.997 153.239 64.352 1.00 56.82 O
ATOM 4 OP2 G A 500 22.534 153.861 64.009 1.00 55.23 O
ATOM 5 O5' G A 500 24.282 154.543 62.353 1.00 54.07 O
ATOM 6 C5' G A 500 25.488 154.390 61.609 1.00 54.59 C
ATOM 7 C4' G A 500 26.231 155.692 61.569 1.00 56.39 C
ATOM 8 O4' G A 500 25.420 156.675 60.882 1.00 57.59 O
ATOM 9 C3' G A 500 26.562 156.298 62.926 1.00 58.03 C
ATOM 10 O3' G A 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 11 C2' G A 500 25.444 157.304 63.138 1.00 58.22 C
ATOM 12 O2' G A 500 25.824 158.380 63.974 1.00 57.35 O
ATOM 13 C1' G A 500 25.250 157.803 61.714 1.00 59.08 C
ATOM 14 N9 G A 500 23.947 158.397 61.443 1.00 59.74 N
ATOM 15 C8 G A 500 22.857 158.465 62.280 1.00 59.62 C
ATOM 16 N7 G A 500 21.857 159.119 61.757 1.00 60.71 N
ATOM 17 C5 G A 500 22.309 159.488 60.496 1.00 60.15 C
ATOM 18 C6 G A 500 21.669 160.230 59.463 1.00 59.83 C
ATOM 19 O6 G A 500 20.535 160.721 59.452 1.00 60.18 O
ATOM 20 N1 G A 500 22.497 160.384 58.357 1.00 59.74 N
ATOM 21 C2 G A 500 23.777 159.902 58.257 1.00 60.04 C
ATOM 22 N2 G A 500 24.440 160.199 57.128 1.00 60.96 N
ATOM 23 N3 G A 500 24.375 159.196 59.199 1.00 59.90 N
ATOM 24 C4 G A 500 23.591 159.037 60.285 1.00 59.51 C
ATOM 25 P A A 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 26 OP1 A A 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 27 OP2 A A 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 28 O5' A A 501 30.122 156.154 62.965 1.00 61.01 O
TER
ATOM 1 O3' G B 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 2 P A B 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 3 OP1 A B 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 4 OP2 A B 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 5 O5' A B 501 30.122 156.154 62.965 1.00 61.01 O
ATOM 6 C5' A B 501 30.023 154.844 62.419 1.00 64.00 C
ATOM 7 C4' A B 501 30.729 154.803 61.105 1.00 66.73 C
ATOM 8 O4' A B 501 29.943 155.537 60.132 1.00 68.17 O
ATOM 9 C3' A B 501 32.104 155.441 61.127 1.00 69.05 C
ATOM 10 O3' A B 501 32.990 154.684 60.353 1.00 72.98 O
ATOM 11 C2' A B 501 31.864 156.826 60.544 1.00 69.64 C
ATOM 12 O2' A B 501 32.964 157.339 59.824 1.00 70.28 O
ATOM 13 C1' A B 501 30.703 156.591 59.587 1.00 69.60 C
ATOM 14 N9 A B 501 29.855 157.785 59.530 1.00 72.06 N
ATOM 15 C8 A B 501 28.948 158.229 60.478 1.00 73.05 C
ATOM 16 N7 A B 501 28.355 159.356 60.159 1.00 73.41 N
ATOM 17 C5 A B 501 28.904 159.678 58.922 1.00 74.09 C
ATOM 18 C6 A B 501 28.699 160.760 58.058 1.00 74.90 C
ATOM 19 N6 A B 501 27.856 161.762 58.320 1.00 74.90 N
ATOM 20 N1 A B 501 29.399 160.782 56.900 1.00 74.95 N
ATOM 21 C2 A B 501 30.250 159.779 56.642 1.00 74.29 C
ATOM 22 N3 A B 501 30.537 158.709 57.379 1.00 73.31 N
ATOM 23 C4 A B 501 29.822 158.716 58.520 1.00 73.22 C
ATOM 24 P G B 502 34.319 154.096 61.037 1.00 76.65 P
ATOM 25 OP1 G B 502 34.074 153.765 62.473 1.00 74.93 O
ATOM 26 OP2 G B 502 35.407 155.048 60.689 1.00 77.14 O
ATOM 27 O5' G B 502 34.550 152.724 60.256 1.00 78.05 O
TER
Atoms:
OP1: (24.997,153.239,64.352)
OP2: (22.534,153.861,64.009)
C3': (26.562,156.298,62.926)
C1': (25.250,157.803,61.714)
C5': (25.488,154.390,61.609)
O6: (20.535,160.721,59.452)
O4': (25.420,156.675,60.882)
C8: (22.857,158.465,62.280)
C2: (23.777,159.902,58.257)
C6: (21.669,160.230,59.463)
C5: (22.309,159.488,60.496)
C4: (23.591,159.037,60.285)
P: (23.853,153.465,63.442)
C4': (26.231,155.692,61.569)
C2': (25.444,157.304,63.138)
O2': (25.824,158.380,63.974)
N1: (22.497,160.384,58.357)
N2: (24.440,160.199,57.128)
N3: (24.375,159.196,59.199)
N7: (21.857,159.119,61.757)
N9: (23.947,158.397,61.443)
O5': (24.282,154.543,62.353)
O3': (27.772,157.007,62.794)
OP2: (22.534,153.861,64.009)
C3': (26.562,156.298,62.926)
C1': (25.250,157.803,61.714)
C5': (25.488,154.390,61.609)
O6: (20.535,160.721,59.452)
O4': (25.420,156.675,60.882)
C8: (22.857,158.465,62.280)
C2: (23.777,159.902,58.257)
C6: (21.669,160.230,59.463)
C5: (22.309,159.488,60.496)
C4: (23.591,159.037,60.285)
P: (23.853,153.465,63.442)
C4': (26.231,155.692,61.569)
C2': (25.444,157.304,63.138)
O2': (25.824,158.380,63.974)
N1: (22.497,160.384,58.357)
N2: (24.440,160.199,57.128)
N3: (24.375,159.196,59.199)
N7: (21.857,159.119,61.757)
N9: (23.947,158.397,61.443)
O5': (24.282,154.543,62.353)
O3': (27.772,157.007,62.794)
OP1: (28.488,155.716,64.805)
OP2: (29.383,158.080,64.344)
C3': (32.104,155.441,61.127)
C1': (30.703,156.591,59.587)
C5': (30.023,154.844,62.419)
O4': (29.943,155.537,60.132)
C8: (28.948,158.229,60.478)
O2': (32.964,157.339,59.824)
C6: (28.699,160.760,58.058)
C5: (28.904,159.678,58.922)
C4: (29.822,158.716,58.520)
P: (28.948,156.758,63.846)
C4': (30.729,154.803,61.105)
C2': (31.864,156.826,60.544)
C2: (30.250,159.779,56.642)
N1: (29.399,160.782,56.900)
N3: (30.537,158.709,57.379)
N6: (27.856,161.762,58.320)
N7: (28.355,159.356,60.159)
N9: (29.855,157.785,59.530)
O5': (30.122,156.154,62.965)
O3': (32.990,154.684,60.353)
OP2: (29.383,158.080,64.344)
C3': (32.104,155.441,61.127)
C1': (30.703,156.591,59.587)
C5': (30.023,154.844,62.419)
O4': (29.943,155.537,60.132)
C8: (28.948,158.229,60.478)
O2': (32.964,157.339,59.824)
C6: (28.699,160.760,58.058)
C5: (28.904,159.678,58.922)
C4: (29.822,158.716,58.520)
P: (28.948,156.758,63.846)
C4': (30.729,154.803,61.105)
C2': (31.864,156.826,60.544)
C2: (30.250,159.779,56.642)
N1: (29.399,160.782,56.900)
N3: (30.537,158.709,57.379)
N6: (27.856,161.762,58.320)
N7: (28.355,159.356,60.159)
N9: (29.855,157.785,59.530)
O5': (30.122,156.154,62.965)
O3': (32.990,154.684,60.353)
Image (generated by PyMOL):