Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01083:01042
Extra
PDB:
ATOM 1 O3' A A1082 36.268 100.431 120.677 1.00 52.06 O
ATOM 2 P A A1083 35.204 99.650 119.756 1.00 54.19 P
ATOM 3 OP1 A A1083 35.652 99.828 118.345 1.00 52.47 O
ATOM 4 OP2 A A1083 33.818 100.045 120.144 1.00 55.75 O
ATOM 5 O5' A A1083 35.388 98.125 120.169 1.00 50.38 O
ATOM 6 C5' A A1083 36.575 97.423 119.820 1.00 45.07 C
ATOM 7 C4' A A1083 36.242 96.018 119.415 1.00 41.79 C
ATOM 8 O4' A A1083 34.966 95.987 118.734 1.00 41.70 O
ATOM 9 C3' A A1083 37.230 95.461 118.421 1.00 41.03 C
ATOM 10 O3' A A1083 38.373 94.965 119.081 1.00 41.00 O
ATOM 11 C2' A A1083 36.399 94.436 117.670 1.00 40.94 C
ATOM 12 O2' A A1083 36.226 93.239 118.395 1.00 40.63 O
ATOM 13 C1' A A1083 35.060 95.170 117.579 1.00 41.43 C
ATOM 14 N9 A A1083 34.917 96.048 116.411 1.00 40.49 N
ATOM 15 C8 A A1083 34.582 97.382 116.427 1.00 40.29 C
ATOM 16 N7 A A1083 34.480 97.917 115.239 1.00 39.97 N
ATOM 17 C5 A A1083 34.775 96.873 114.379 1.00 38.93 C
ATOM 18 C6 A A1083 34.832 96.797 112.984 1.00 38.39 C
ATOM 19 N6 A A1083 34.559 97.823 112.181 1.00 36.41 N
ATOM 20 N1 A A1083 35.176 95.614 112.433 1.00 38.75 N
ATOM 21 C2 A A1083 35.435 94.582 113.243 1.00 39.29 C
ATOM 22 N3 A A1083 35.404 94.527 114.573 1.00 40.26 N
ATOM 23 C4 A A1083 35.063 95.719 115.086 1.00 39.32 C
ATOM 24 P U A1084 39.760 95.751 118.937 1.00 40.93 P
ATOM 25 OP1 U A1084 40.750 95.110 119.840 1.00 39.93 O
ATOM 26 OP2 U A1084 39.470 97.193 119.073 1.00 40.54 O
ATOM 27 O5' U A1084 40.175 95.482 117.428 1.00 40.63 O
TER
ATOM 1 O3' A B1041 38.038 95.815 103.120 1.00 42.40 O
ATOM 2 P C B1042 38.760 94.780 104.122 1.00 44.65 P
ATOM 3 OP1 C B1042 40.234 94.867 103.958 1.00 45.17 O
ATOM 4 OP2 C B1042 38.087 93.464 103.943 1.00 42.99 O
ATOM 5 O5' C B1042 38.387 95.322 105.576 1.00 44.77 O
ATOM 6 C5' C B1042 38.825 94.612 106.761 1.00 44.00 C
ATOM 7 C4' C B1042 37.866 94.832 107.914 1.00 42.55 C
ATOM 8 O4' C B1042 37.906 96.211 108.363 1.00 43.70 O
ATOM 9 C3' C B1042 36.397 94.597 107.629 1.00 41.51 C
ATOM 10 O3' C B1042 36.086 93.228 107.686 1.00 41.65 O
ATOM 11 C2' C B1042 35.742 95.352 108.765 1.00 41.98 C
ATOM 12 O2' C B1042 35.886 94.645 109.975 1.00 43.33 O
ATOM 13 C1' C B1042 36.623 96.597 108.830 1.00 42.54 C
ATOM 14 N1 C B1042 36.124 97.681 107.966 1.00 43.75 N
ATOM 15 C2 C B1042 34.954 98.363 108.332 1.00 43.62 C
ATOM 16 O2 C B1042 34.353 98.029 109.362 1.00 42.84 O
ATOM 17 N3 C B1042 34.506 99.364 107.547 1.00 44.14 N
ATOM 18 C4 C B1042 35.166 99.687 106.434 1.00 44.46 C
ATOM 19 N4 C B1042 34.689 100.688 105.695 1.00 46.06 N
ATOM 20 C5 C B1042 36.346 99.002 106.031 1.00 44.80 C
ATOM 21 C6 C B1042 36.787 98.020 106.819 1.00 44.62 C
ATOM 22 P C B1043 34.839 92.672 106.859 1.00 42.43 P
ATOM 23 OP1 C B1043 34.891 91.190 106.972 1.00 42.60 O
ATOM 24 OP2 C B1043 34.817 93.313 105.519 1.00 40.30 O
ATOM 25 O5' C B1043 33.594 93.188 107.692 1.00 39.56 O
TER
ATOM 2 P A A1083 35.204 99.650 119.756 1.00 54.19 P
ATOM 3 OP1 A A1083 35.652 99.828 118.345 1.00 52.47 O
ATOM 4 OP2 A A1083 33.818 100.045 120.144 1.00 55.75 O
ATOM 5 O5' A A1083 35.388 98.125 120.169 1.00 50.38 O
ATOM 6 C5' A A1083 36.575 97.423 119.820 1.00 45.07 C
ATOM 7 C4' A A1083 36.242 96.018 119.415 1.00 41.79 C
ATOM 8 O4' A A1083 34.966 95.987 118.734 1.00 41.70 O
ATOM 9 C3' A A1083 37.230 95.461 118.421 1.00 41.03 C
ATOM 10 O3' A A1083 38.373 94.965 119.081 1.00 41.00 O
ATOM 11 C2' A A1083 36.399 94.436 117.670 1.00 40.94 C
ATOM 12 O2' A A1083 36.226 93.239 118.395 1.00 40.63 O
ATOM 13 C1' A A1083 35.060 95.170 117.579 1.00 41.43 C
ATOM 14 N9 A A1083 34.917 96.048 116.411 1.00 40.49 N
ATOM 15 C8 A A1083 34.582 97.382 116.427 1.00 40.29 C
ATOM 16 N7 A A1083 34.480 97.917 115.239 1.00 39.97 N
ATOM 17 C5 A A1083 34.775 96.873 114.379 1.00 38.93 C
ATOM 18 C6 A A1083 34.832 96.797 112.984 1.00 38.39 C
ATOM 19 N6 A A1083 34.559 97.823 112.181 1.00 36.41 N
ATOM 20 N1 A A1083 35.176 95.614 112.433 1.00 38.75 N
ATOM 21 C2 A A1083 35.435 94.582 113.243 1.00 39.29 C
ATOM 22 N3 A A1083 35.404 94.527 114.573 1.00 40.26 N
ATOM 23 C4 A A1083 35.063 95.719 115.086 1.00 39.32 C
ATOM 24 P U A1084 39.760 95.751 118.937 1.00 40.93 P
ATOM 25 OP1 U A1084 40.750 95.110 119.840 1.00 39.93 O
ATOM 26 OP2 U A1084 39.470 97.193 119.073 1.00 40.54 O
ATOM 27 O5' U A1084 40.175 95.482 117.428 1.00 40.63 O
TER
ATOM 1 O3' A B1041 38.038 95.815 103.120 1.00 42.40 O
ATOM 2 P C B1042 38.760 94.780 104.122 1.00 44.65 P
ATOM 3 OP1 C B1042 40.234 94.867 103.958 1.00 45.17 O
ATOM 4 OP2 C B1042 38.087 93.464 103.943 1.00 42.99 O
ATOM 5 O5' C B1042 38.387 95.322 105.576 1.00 44.77 O
ATOM 6 C5' C B1042 38.825 94.612 106.761 1.00 44.00 C
ATOM 7 C4' C B1042 37.866 94.832 107.914 1.00 42.55 C
ATOM 8 O4' C B1042 37.906 96.211 108.363 1.00 43.70 O
ATOM 9 C3' C B1042 36.397 94.597 107.629 1.00 41.51 C
ATOM 10 O3' C B1042 36.086 93.228 107.686 1.00 41.65 O
ATOM 11 C2' C B1042 35.742 95.352 108.765 1.00 41.98 C
ATOM 12 O2' C B1042 35.886 94.645 109.975 1.00 43.33 O
ATOM 13 C1' C B1042 36.623 96.597 108.830 1.00 42.54 C
ATOM 14 N1 C B1042 36.124 97.681 107.966 1.00 43.75 N
ATOM 15 C2 C B1042 34.954 98.363 108.332 1.00 43.62 C
ATOM 16 O2 C B1042 34.353 98.029 109.362 1.00 42.84 O
ATOM 17 N3 C B1042 34.506 99.364 107.547 1.00 44.14 N
ATOM 18 C4 C B1042 35.166 99.687 106.434 1.00 44.46 C
ATOM 19 N4 C B1042 34.689 100.688 105.695 1.00 46.06 N
ATOM 20 C5 C B1042 36.346 99.002 106.031 1.00 44.80 C
ATOM 21 C6 C B1042 36.787 98.020 106.819 1.00 44.62 C
ATOM 22 P C B1043 34.839 92.672 106.859 1.00 42.43 P
ATOM 23 OP1 C B1043 34.891 91.190 106.972 1.00 42.60 O
ATOM 24 OP2 C B1043 34.817 93.313 105.519 1.00 40.30 O
ATOM 25 O5' C B1043 33.594 93.188 107.692 1.00 39.56 O
TER
Atoms:
OP1: (35.652,99.828,118.345)
OP2: (33.818,100.045,120.144)
C3': (37.230,95.461,118.421)
C1': (35.060,95.170,117.579)
C5': (36.575,97.423,119.820)
O4': (34.966,95.987,118.734)
C8: (34.582,97.382,116.427)
O2': (36.226,93.239,118.395)
C6: (34.832,96.797,112.984)
C5: (34.775,96.873,114.379)
C4: (35.063,95.719,115.086)
P: (35.204,99.650,119.756)
C4': (36.242,96.018,119.415)
C2': (36.399,94.436,117.670)
C2: (35.435,94.582,113.243)
N1: (35.176,95.614,112.433)
N3: (35.404,94.527,114.573)
N6: (34.559,97.823,112.181)
N7: (34.480,97.917,115.239)
N9: (34.917,96.048,116.411)
O5': (35.388,98.125,120.169)
O3': (38.373,94.965,119.081)
OP2: (33.818,100.045,120.144)
C3': (37.230,95.461,118.421)
C1': (35.060,95.170,117.579)
C5': (36.575,97.423,119.820)
O4': (34.966,95.987,118.734)
C8: (34.582,97.382,116.427)
O2': (36.226,93.239,118.395)
C6: (34.832,96.797,112.984)
C5: (34.775,96.873,114.379)
C4: (35.063,95.719,115.086)
P: (35.204,99.650,119.756)
C4': (36.242,96.018,119.415)
C2': (36.399,94.436,117.670)
C2: (35.435,94.582,113.243)
N1: (35.176,95.614,112.433)
N3: (35.404,94.527,114.573)
N6: (34.559,97.823,112.181)
N7: (34.480,97.917,115.239)
N9: (34.917,96.048,116.411)
O5': (35.388,98.125,120.169)
O3': (38.373,94.965,119.081)
C2: (34.954,98.363,108.332)
OP1: (40.234,94.867,103.958)
OP2: (38.087,93.464,103.943)
C4: (35.166,99.687,106.434)
O5': (38.387,95.322,105.576)
C3': (36.397,94.597,107.629)
C1': (36.623,96.597,108.830)
O4': (37.906,96.211,108.363)
C5': (38.825,94.612,106.761)
P: (38.760,94.780,104.122)
O2: (34.353,98.029,109.362)
C4': (37.866,94.832,107.914)
C2': (35.742,95.352,108.765)
O2': (35.886,94.645,109.975)
N1: (36.124,97.681,107.966)
N3: (34.506,99.364,107.547)
N4: (34.689,100.688,105.695)
C6: (36.787,98.020,106.819)
C5: (36.346,99.002,106.031)
O3': (36.086,93.228,107.686)
OP1: (40.234,94.867,103.958)
OP2: (38.087,93.464,103.943)
C4: (35.166,99.687,106.434)
O5': (38.387,95.322,105.576)
C3': (36.397,94.597,107.629)
C1': (36.623,96.597,108.830)
O4': (37.906,96.211,108.363)
C5': (38.825,94.612,106.761)
P: (38.760,94.780,104.122)
O2: (34.353,98.029,109.362)
C4': (37.866,94.832,107.914)
C2': (35.742,95.352,108.765)
O2': (35.886,94.645,109.975)
N1: (36.124,97.681,107.966)
N3: (34.506,99.364,107.547)
N4: (34.689,100.688,105.695)
C6: (36.787,98.020,106.819)
C5: (36.346,99.002,106.031)
O3': (36.086,93.228,107.686)
Image (generated by PyMOL):