Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A1089:A1090
Extra
PDB:
ATOM 1 O3' U A1088 -110.720 63.445 5.974 1.00 32.49 O
ATOM 2 P U A1089 -111.405 62.063 6.379 1.00 28.55 P
ATOM 3 OP1 U A1089 -112.138 62.292 7.654 1.00 28.55 O
ATOM 4 OP2 U A1089 -110.335 61.021 6.331 1.00 28.55 O
ATOM 5 O5' U A1089 -112.440 61.839 5.199 1.00 28.55 O
ATOM 6 C5' U A1089 -113.498 62.751 5.000 1.00 28.55 C
ATOM 7 C4' U A1089 -114.205 62.489 3.705 1.00 28.55 C
ATOM 8 O4' U A1089 -113.262 62.487 2.615 1.00 28.55 O
ATOM 9 C3' U A1089 -114.894 61.151 3.602 1.00 28.55 C
ATOM 10 O3' U A1089 -116.153 61.156 4.236 1.00 28.55 O
ATOM 11 C2' U A1089 -114.983 60.928 2.105 1.00 28.55 C
ATOM 12 O2' U A1089 -116.127 61.576 1.572 1.00 28.55 O
ATOM 13 C1' U A1089 -113.716 61.630 1.599 1.00 28.55 C
ATOM 14 N1 U A1089 -112.642 60.680 1.278 1.00 28.70 N
ATOM 15 C2 U A1089 -112.636 60.148 0.001 1.00 28.70 C
ATOM 16 O2 U A1089 -113.463 60.386 -0.865 1.00 28.70 O
ATOM 17 N3 U A1089 -111.619 59.284 -0.252 1.00 28.70 N
ATOM 18 C4 U A1089 -110.626 58.902 0.607 1.00 28.70 C
ATOM 19 O4 U A1089 -109.789 58.089 0.192 1.00 28.70 O
ATOM 20 C5 U A1089 -110.697 59.507 1.909 1.00 28.70 C
ATOM 21 C6 U A1089 -111.681 60.359 2.197 1.00 28.70 C
ATOM 22 P A A1090 -116.689 59.841 4.964 1.00 44.88 P
ATOM 23 OP1 A A1090 -118.116 60.099 5.311 1.00 44.88 O
ATOM 24 OP2 A A1090 -115.725 59.516 6.053 1.00 44.88 O
ATOM 25 O5' A A1090 -116.589 58.747 3.809 1.00 44.88 O
TER
ATOM 1 O3' U B1089 -116.153 61.156 4.236 1.00 28.55 O
ATOM 2 P A B1090 -116.689 59.841 4.964 1.00 44.88 P
ATOM 3 OP1 A B1090 -118.116 60.099 5.311 1.00 44.88 O
ATOM 4 OP2 A B1090 -115.725 59.516 6.053 1.00 44.88 O
ATOM 5 O5' A B1090 -116.589 58.747 3.809 1.00 44.88 O
ATOM 6 C5' A B1090 -116.599 57.357 4.104 1.00 44.88 C
ATOM 7 C4' A B1090 -117.172 56.566 2.957 1.00 44.88 C
ATOM 8 O4' A B1090 -118.564 56.938 2.758 1.00 44.88 O
ATOM 9 C3' A B1090 -116.501 56.799 1.611 1.00 44.88 C
ATOM 10 O3' A B1090 -115.390 55.950 1.410 1.00 44.88 O
ATOM 11 C2' A B1090 -117.620 56.581 0.607 1.00 44.88 C
ATOM 12 O2' A B1090 -117.765 55.209 0.301 1.00 44.88 O
ATOM 13 C1' A B1090 -118.852 57.051 1.387 1.00 44.88 C
ATOM 14 N9 A B1090 -119.176 58.458 1.094 1.00 45.10 N
ATOM 15 C8 A B1090 -118.927 59.564 1.860 1.00 45.10 C
ATOM 16 N7 A B1090 -119.315 60.676 1.296 1.00 45.10 N
ATOM 17 C5 A B1090 -119.844 60.276 0.077 1.00 45.10 C
ATOM 18 C6 A B1090 -120.427 60.978 -0.995 1.00 45.10 C
ATOM 19 N6 A B1090 -120.595 62.303 -1.032 1.00 45.10 N
ATOM 20 N1 A B1090 -120.851 60.270 -2.056 1.00 45.10 N
ATOM 21 C2 A B1090 -120.696 58.945 -2.033 1.00 45.10 C
ATOM 22 N3 A B1090 -120.166 58.175 -1.092 1.00 45.10 N
ATOM 23 C4 A B1090 -119.760 58.913 -0.054 1.00 45.10 C
ATOM 24 P A B1091 -113.959 56.570 1.049 1.00 14.07 P
ATOM 25 OP1 A B1091 -112.950 55.501 1.217 1.00 14.07 O
ATOM 26 OP2 A B1091 -113.810 57.806 1.839 1.00 14.07 O
ATOM 27 O5' A B1091 -114.105 56.906 -0.496 1.00 14.07 O
TER
ATOM 2 P U A1089 -111.405 62.063 6.379 1.00 28.55 P
ATOM 3 OP1 U A1089 -112.138 62.292 7.654 1.00 28.55 O
ATOM 4 OP2 U A1089 -110.335 61.021 6.331 1.00 28.55 O
ATOM 5 O5' U A1089 -112.440 61.839 5.199 1.00 28.55 O
ATOM 6 C5' U A1089 -113.498 62.751 5.000 1.00 28.55 C
ATOM 7 C4' U A1089 -114.205 62.489 3.705 1.00 28.55 C
ATOM 8 O4' U A1089 -113.262 62.487 2.615 1.00 28.55 O
ATOM 9 C3' U A1089 -114.894 61.151 3.602 1.00 28.55 C
ATOM 10 O3' U A1089 -116.153 61.156 4.236 1.00 28.55 O
ATOM 11 C2' U A1089 -114.983 60.928 2.105 1.00 28.55 C
ATOM 12 O2' U A1089 -116.127 61.576 1.572 1.00 28.55 O
ATOM 13 C1' U A1089 -113.716 61.630 1.599 1.00 28.55 C
ATOM 14 N1 U A1089 -112.642 60.680 1.278 1.00 28.70 N
ATOM 15 C2 U A1089 -112.636 60.148 0.001 1.00 28.70 C
ATOM 16 O2 U A1089 -113.463 60.386 -0.865 1.00 28.70 O
ATOM 17 N3 U A1089 -111.619 59.284 -0.252 1.00 28.70 N
ATOM 18 C4 U A1089 -110.626 58.902 0.607 1.00 28.70 C
ATOM 19 O4 U A1089 -109.789 58.089 0.192 1.00 28.70 O
ATOM 20 C5 U A1089 -110.697 59.507 1.909 1.00 28.70 C
ATOM 21 C6 U A1089 -111.681 60.359 2.197 1.00 28.70 C
ATOM 22 P A A1090 -116.689 59.841 4.964 1.00 44.88 P
ATOM 23 OP1 A A1090 -118.116 60.099 5.311 1.00 44.88 O
ATOM 24 OP2 A A1090 -115.725 59.516 6.053 1.00 44.88 O
ATOM 25 O5' A A1090 -116.589 58.747 3.809 1.00 44.88 O
TER
ATOM 1 O3' U B1089 -116.153 61.156 4.236 1.00 28.55 O
ATOM 2 P A B1090 -116.689 59.841 4.964 1.00 44.88 P
ATOM 3 OP1 A B1090 -118.116 60.099 5.311 1.00 44.88 O
ATOM 4 OP2 A B1090 -115.725 59.516 6.053 1.00 44.88 O
ATOM 5 O5' A B1090 -116.589 58.747 3.809 1.00 44.88 O
ATOM 6 C5' A B1090 -116.599 57.357 4.104 1.00 44.88 C
ATOM 7 C4' A B1090 -117.172 56.566 2.957 1.00 44.88 C
ATOM 8 O4' A B1090 -118.564 56.938 2.758 1.00 44.88 O
ATOM 9 C3' A B1090 -116.501 56.799 1.611 1.00 44.88 C
ATOM 10 O3' A B1090 -115.390 55.950 1.410 1.00 44.88 O
ATOM 11 C2' A B1090 -117.620 56.581 0.607 1.00 44.88 C
ATOM 12 O2' A B1090 -117.765 55.209 0.301 1.00 44.88 O
ATOM 13 C1' A B1090 -118.852 57.051 1.387 1.00 44.88 C
ATOM 14 N9 A B1090 -119.176 58.458 1.094 1.00 45.10 N
ATOM 15 C8 A B1090 -118.927 59.564 1.860 1.00 45.10 C
ATOM 16 N7 A B1090 -119.315 60.676 1.296 1.00 45.10 N
ATOM 17 C5 A B1090 -119.844 60.276 0.077 1.00 45.10 C
ATOM 18 C6 A B1090 -120.427 60.978 -0.995 1.00 45.10 C
ATOM 19 N6 A B1090 -120.595 62.303 -1.032 1.00 45.10 N
ATOM 20 N1 A B1090 -120.851 60.270 -2.056 1.00 45.10 N
ATOM 21 C2 A B1090 -120.696 58.945 -2.033 1.00 45.10 C
ATOM 22 N3 A B1090 -120.166 58.175 -1.092 1.00 45.10 N
ATOM 23 C4 A B1090 -119.760 58.913 -0.054 1.00 45.10 C
ATOM 24 P A B1091 -113.959 56.570 1.049 1.00 14.07 P
ATOM 25 OP1 A B1091 -112.950 55.501 1.217 1.00 14.07 O
ATOM 26 OP2 A B1091 -113.810 57.806 1.839 1.00 14.07 O
ATOM 27 O5' A B1091 -114.105 56.906 -0.496 1.00 14.07 O
TER
Atoms:
C4: (-110.626,58.902,0.607)
N3: (-111.619,59.284,-0.252)
OP1: (-112.138,62.292,7.654)
OP2: (-110.335,61.021,6.331)
C2: (-112.636,60.148,0.001)
C1': (-113.716,61.630,1.599)
C3': (-114.894,61.151,3.602)
O5': (-112.440,61.839,5.199)
O4': (-113.262,62.487,2.615)
C5': (-113.498,62.751,5.000)
P: (-111.405,62.063,6.379)
C4': (-114.205,62.489,3.705)
C2': (-114.983,60.928,2.105)
O2': (-116.127,61.576,1.572)
N1: (-112.642,60.680,1.278)
O4: (-109.789,58.089,0.192)
O2: (-113.463,60.386,-0.865)
C6: (-111.681,60.359,2.197)
C5: (-110.697,59.507,1.909)
O3': (-116.153,61.156,4.236)
N3: (-111.619,59.284,-0.252)
OP1: (-112.138,62.292,7.654)
OP2: (-110.335,61.021,6.331)
C2: (-112.636,60.148,0.001)
C1': (-113.716,61.630,1.599)
C3': (-114.894,61.151,3.602)
O5': (-112.440,61.839,5.199)
O4': (-113.262,62.487,2.615)
C5': (-113.498,62.751,5.000)
P: (-111.405,62.063,6.379)
C4': (-114.205,62.489,3.705)
C2': (-114.983,60.928,2.105)
O2': (-116.127,61.576,1.572)
N1: (-112.642,60.680,1.278)
O4: (-109.789,58.089,0.192)
O2: (-113.463,60.386,-0.865)
C6: (-111.681,60.359,2.197)
C5: (-110.697,59.507,1.909)
O3': (-116.153,61.156,4.236)
OP1: (-118.116,60.099,5.311)
OP2: (-115.725,59.516,6.053)
C3': (-116.501,56.799,1.611)
C1': (-118.852,57.051,1.387)
C5': (-116.599,57.357,4.104)
O4': (-118.564,56.938,2.758)
C8: (-118.927,59.564,1.860)
O2': (-117.765,55.209,0.301)
C6: (-120.427,60.978,-0.995)
C5: (-119.844,60.276,0.077)
C4: (-119.760,58.913,-0.054)
P: (-116.689,59.841,4.964)
C4': (-117.172,56.566,2.957)
C2': (-117.620,56.581,0.607)
C2: (-120.696,58.945,-2.033)
N1: (-120.851,60.270,-2.056)
N3: (-120.166,58.175,-1.092)
N6: (-120.595,62.303,-1.032)
N7: (-119.315,60.676,1.296)
N9: (-119.176,58.458,1.094)
O5': (-116.589,58.747,3.809)
O3': (-115.390,55.950,1.410)
OP2: (-115.725,59.516,6.053)
C3': (-116.501,56.799,1.611)
C1': (-118.852,57.051,1.387)
C5': (-116.599,57.357,4.104)
O4': (-118.564,56.938,2.758)
C8: (-118.927,59.564,1.860)
O2': (-117.765,55.209,0.301)
C6: (-120.427,60.978,-0.995)
C5: (-119.844,60.276,0.077)
C4: (-119.760,58.913,-0.054)
P: (-116.689,59.841,4.964)
C4': (-117.172,56.566,2.957)
C2': (-117.620,56.581,0.607)
C2: (-120.696,58.945,-2.033)
N1: (-120.851,60.270,-2.056)
N3: (-120.166,58.175,-1.092)
N6: (-120.595,62.303,-1.032)
N7: (-119.315,60.676,1.296)
N9: (-119.176,58.458,1.094)
O5': (-116.589,58.747,3.809)
O3': (-115.390,55.950,1.410)
Image (generated by PyMOL):