Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1087:A1088
Extra
PDB:
ATOM 1 O3' G A1086 -115.862 -48.504 -59.658 1.00115.01 O
ATOM 2 P U A1087 -116.222 -46.941 -59.904 1.00111.61 P
ATOM 3 OP1 U A1087 -115.042 -46.145 -59.458 1.00111.61 O
ATOM 4 OP2 U A1087 -117.536 -46.683 -59.257 1.00111.61 O
ATOM 5 O5' U A1087 -116.373 -46.859 -61.505 1.00111.61 O
ATOM 6 C5' U A1087 -116.872 -45.683 -62.153 1.00111.61 C
ATOM 7 C4' U A1087 -116.864 -45.808 -63.675 1.00111.61 C
ATOM 8 O4' U A1087 -117.844 -46.803 -64.097 1.00111.61 O
ATOM 9 C3' U A1087 -117.248 -44.542 -64.452 1.00111.61 C
ATOM 10 O3' U A1087 -116.151 -43.665 -64.675 1.00111.61 O
ATOM 11 C2' U A1087 -117.873 -45.089 -65.735 1.00111.61 C
ATOM 12 O2' U A1087 -116.877 -45.483 -66.673 1.00111.61 O
ATOM 13 C1' U A1087 -118.579 -46.335 -65.214 1.00111.61 C
ATOM 14 N1 U A1087 -119.954 -46.037 -64.760 1.00109.82 N
ATOM 15 C2 U A1087 -120.855 -45.416 -65.602 1.00109.82 C
ATOM 16 O2 U A1087 -120.598 -45.095 -66.743 1.00109.82 O
ATOM 17 N3 U A1087 -122.083 -45.194 -65.044 1.00109.82 N
ATOM 18 C4 U A1087 -122.479 -45.522 -63.759 1.00109.82 C
ATOM 19 O4 U A1087 -123.615 -45.266 -63.373 1.00109.82 O
ATOM 20 C5 U A1087 -121.497 -46.155 -62.949 1.00109.82 C
ATOM 21 C6 U A1087 -120.298 -46.380 -63.472 1.00109.82 C
ATOM 22 P A A1088 -115.966 -42.331 -63.781 1.00151.71 P
ATOM 23 OP1 A A1088 -114.714 -41.666 -64.241 1.00151.71 O
ATOM 24 OP2 A A1088 -116.081 -42.735 -62.349 1.00151.71 O
ATOM 25 O5' A A1088 -117.226 -41.453 -64.195 1.00151.71 O
TER
ATOM 1 O3' U B1087 -116.151 -43.665 -64.675 1.00111.61 O
ATOM 2 P A B1088 -115.966 -42.331 -63.781 1.00151.71 P
ATOM 3 OP1 A B1088 -114.714 -41.666 -64.241 1.00151.71 O
ATOM 4 OP2 A B1088 -116.081 -42.735 -62.349 1.00151.71 O
ATOM 5 O5' A B1088 -117.226 -41.453 -64.195 1.00151.71 O
ATOM 6 C5' A B1088 -117.259 -40.056 -63.946 1.00151.71 C
ATOM 7 C4' A B1088 -118.090 -39.344 -64.977 1.00151.71 C
ATOM 8 O4' A B1088 -117.271 -39.038 -66.140 1.00151.71 O
ATOM 9 C3' A B1088 -119.254 -40.143 -65.553 1.00151.71 C
ATOM 10 O3' A B1088 -120.398 -40.168 -64.714 1.00151.71 O
ATOM 11 C2' A B1088 -119.478 -39.464 -66.893 1.00151.71 C
ATOM 12 O2' A B1088 -120.133 -38.213 -66.728 1.00151.71 O
ATOM 13 C1' A B1088 -118.032 -39.213 -67.320 1.00151.71 C
ATOM 14 N9 A B1088 -117.481 -40.364 -68.063 1.00150.00 N
ATOM 15 C8 A B1088 -116.729 -41.408 -67.573 1.00150.00 C
ATOM 16 N7 A B1088 -116.398 -42.297 -68.480 1.00150.00 N
ATOM 17 C5 A B1088 -116.978 -41.807 -69.648 1.00150.00 C
ATOM 18 C6 A B1088 -117.000 -42.283 -70.976 1.00150.00 C
ATOM 19 N6 A B1088 -116.400 -43.410 -71.367 1.00150.00 N
ATOM 20 N1 A B1088 -117.673 -41.555 -71.902 1.00150.00 N
ATOM 21 C2 A B1088 -118.281 -40.421 -71.516 1.00150.00 C
ATOM 22 N3 A B1088 -118.330 -39.870 -70.302 1.00150.00 N
ATOM 23 C4 A B1088 -117.652 -40.618 -69.405 1.00150.00 C
ATOM 24 P A B1089 -120.645 -41.423 -63.735 1.00134.53 P
ATOM 25 OP1 A B1089 -120.561 -40.912 -62.338 1.00134.53 O
ATOM 26 OP2 A B1089 -119.714 -42.502 -64.162 1.00134.53 O
ATOM 27 O5' A B1089 -122.142 -41.848 -64.066 1.00134.53 O
TER
ATOM 2 P U A1087 -116.222 -46.941 -59.904 1.00111.61 P
ATOM 3 OP1 U A1087 -115.042 -46.145 -59.458 1.00111.61 O
ATOM 4 OP2 U A1087 -117.536 -46.683 -59.257 1.00111.61 O
ATOM 5 O5' U A1087 -116.373 -46.859 -61.505 1.00111.61 O
ATOM 6 C5' U A1087 -116.872 -45.683 -62.153 1.00111.61 C
ATOM 7 C4' U A1087 -116.864 -45.808 -63.675 1.00111.61 C
ATOM 8 O4' U A1087 -117.844 -46.803 -64.097 1.00111.61 O
ATOM 9 C3' U A1087 -117.248 -44.542 -64.452 1.00111.61 C
ATOM 10 O3' U A1087 -116.151 -43.665 -64.675 1.00111.61 O
ATOM 11 C2' U A1087 -117.873 -45.089 -65.735 1.00111.61 C
ATOM 12 O2' U A1087 -116.877 -45.483 -66.673 1.00111.61 O
ATOM 13 C1' U A1087 -118.579 -46.335 -65.214 1.00111.61 C
ATOM 14 N1 U A1087 -119.954 -46.037 -64.760 1.00109.82 N
ATOM 15 C2 U A1087 -120.855 -45.416 -65.602 1.00109.82 C
ATOM 16 O2 U A1087 -120.598 -45.095 -66.743 1.00109.82 O
ATOM 17 N3 U A1087 -122.083 -45.194 -65.044 1.00109.82 N
ATOM 18 C4 U A1087 -122.479 -45.522 -63.759 1.00109.82 C
ATOM 19 O4 U A1087 -123.615 -45.266 -63.373 1.00109.82 O
ATOM 20 C5 U A1087 -121.497 -46.155 -62.949 1.00109.82 C
ATOM 21 C6 U A1087 -120.298 -46.380 -63.472 1.00109.82 C
ATOM 22 P A A1088 -115.966 -42.331 -63.781 1.00151.71 P
ATOM 23 OP1 A A1088 -114.714 -41.666 -64.241 1.00151.71 O
ATOM 24 OP2 A A1088 -116.081 -42.735 -62.349 1.00151.71 O
ATOM 25 O5' A A1088 -117.226 -41.453 -64.195 1.00151.71 O
TER
ATOM 1 O3' U B1087 -116.151 -43.665 -64.675 1.00111.61 O
ATOM 2 P A B1088 -115.966 -42.331 -63.781 1.00151.71 P
ATOM 3 OP1 A B1088 -114.714 -41.666 -64.241 1.00151.71 O
ATOM 4 OP2 A B1088 -116.081 -42.735 -62.349 1.00151.71 O
ATOM 5 O5' A B1088 -117.226 -41.453 -64.195 1.00151.71 O
ATOM 6 C5' A B1088 -117.259 -40.056 -63.946 1.00151.71 C
ATOM 7 C4' A B1088 -118.090 -39.344 -64.977 1.00151.71 C
ATOM 8 O4' A B1088 -117.271 -39.038 -66.140 1.00151.71 O
ATOM 9 C3' A B1088 -119.254 -40.143 -65.553 1.00151.71 C
ATOM 10 O3' A B1088 -120.398 -40.168 -64.714 1.00151.71 O
ATOM 11 C2' A B1088 -119.478 -39.464 -66.893 1.00151.71 C
ATOM 12 O2' A B1088 -120.133 -38.213 -66.728 1.00151.71 O
ATOM 13 C1' A B1088 -118.032 -39.213 -67.320 1.00151.71 C
ATOM 14 N9 A B1088 -117.481 -40.364 -68.063 1.00150.00 N
ATOM 15 C8 A B1088 -116.729 -41.408 -67.573 1.00150.00 C
ATOM 16 N7 A B1088 -116.398 -42.297 -68.480 1.00150.00 N
ATOM 17 C5 A B1088 -116.978 -41.807 -69.648 1.00150.00 C
ATOM 18 C6 A B1088 -117.000 -42.283 -70.976 1.00150.00 C
ATOM 19 N6 A B1088 -116.400 -43.410 -71.367 1.00150.00 N
ATOM 20 N1 A B1088 -117.673 -41.555 -71.902 1.00150.00 N
ATOM 21 C2 A B1088 -118.281 -40.421 -71.516 1.00150.00 C
ATOM 22 N3 A B1088 -118.330 -39.870 -70.302 1.00150.00 N
ATOM 23 C4 A B1088 -117.652 -40.618 -69.405 1.00150.00 C
ATOM 24 P A B1089 -120.645 -41.423 -63.735 1.00134.53 P
ATOM 25 OP1 A B1089 -120.561 -40.912 -62.338 1.00134.53 O
ATOM 26 OP2 A B1089 -119.714 -42.502 -64.162 1.00134.53 O
ATOM 27 O5' A B1089 -122.142 -41.848 -64.066 1.00134.53 O
TER
Atoms:
C4: (-122.479,-45.522,-63.759)
N3: (-122.083,-45.194,-65.044)
OP1: (-115.042,-46.145,-59.458)
OP2: (-117.536,-46.683,-59.257)
C2: (-120.855,-45.416,-65.602)
C1': (-118.579,-46.335,-65.214)
C3': (-117.248,-44.542,-64.452)
O5': (-116.373,-46.859,-61.505)
O4': (-117.844,-46.803,-64.097)
C5': (-116.872,-45.683,-62.153)
P: (-116.222,-46.941,-59.904)
C4': (-116.864,-45.808,-63.675)
C2': (-117.873,-45.089,-65.735)
O2': (-116.877,-45.483,-66.673)
N1: (-119.954,-46.037,-64.760)
O4: (-123.615,-45.266,-63.373)
O2: (-120.598,-45.095,-66.743)
C6: (-120.298,-46.380,-63.472)
C5: (-121.497,-46.155,-62.949)
O3': (-116.151,-43.665,-64.675)
N3: (-122.083,-45.194,-65.044)
OP1: (-115.042,-46.145,-59.458)
OP2: (-117.536,-46.683,-59.257)
C2: (-120.855,-45.416,-65.602)
C1': (-118.579,-46.335,-65.214)
C3': (-117.248,-44.542,-64.452)
O5': (-116.373,-46.859,-61.505)
O4': (-117.844,-46.803,-64.097)
C5': (-116.872,-45.683,-62.153)
P: (-116.222,-46.941,-59.904)
C4': (-116.864,-45.808,-63.675)
C2': (-117.873,-45.089,-65.735)
O2': (-116.877,-45.483,-66.673)
N1: (-119.954,-46.037,-64.760)
O4: (-123.615,-45.266,-63.373)
O2: (-120.598,-45.095,-66.743)
C6: (-120.298,-46.380,-63.472)
C5: (-121.497,-46.155,-62.949)
O3': (-116.151,-43.665,-64.675)
OP1: (-114.714,-41.666,-64.241)
OP2: (-116.081,-42.735,-62.349)
C3': (-119.254,-40.143,-65.553)
C1': (-118.032,-39.213,-67.320)
C5': (-117.259,-40.056,-63.946)
O4': (-117.271,-39.038,-66.140)
C8: (-116.729,-41.408,-67.573)
O2': (-120.133,-38.213,-66.728)
C6: (-117.000,-42.283,-70.976)
C5: (-116.978,-41.807,-69.648)
C4: (-117.652,-40.618,-69.405)
P: (-115.966,-42.331,-63.781)
C4': (-118.090,-39.344,-64.977)
C2': (-119.478,-39.464,-66.893)
C2: (-118.281,-40.421,-71.516)
N1: (-117.673,-41.555,-71.902)
N3: (-118.330,-39.870,-70.302)
N6: (-116.400,-43.410,-71.367)
N7: (-116.398,-42.297,-68.480)
N9: (-117.481,-40.364,-68.063)
O5': (-117.226,-41.453,-64.195)
O3': (-120.398,-40.168,-64.714)
OP2: (-116.081,-42.735,-62.349)
C3': (-119.254,-40.143,-65.553)
C1': (-118.032,-39.213,-67.320)
C5': (-117.259,-40.056,-63.946)
O4': (-117.271,-39.038,-66.140)
C8: (-116.729,-41.408,-67.573)
O2': (-120.133,-38.213,-66.728)
C6: (-117.000,-42.283,-70.976)
C5: (-116.978,-41.807,-69.648)
C4: (-117.652,-40.618,-69.405)
P: (-115.966,-42.331,-63.781)
C4': (-118.090,-39.344,-64.977)
C2': (-119.478,-39.464,-66.893)
C2: (-118.281,-40.421,-71.516)
N1: (-117.673,-41.555,-71.902)
N3: (-118.330,-39.870,-70.302)
N6: (-116.400,-43.410,-71.367)
N7: (-116.398,-42.297,-68.480)
N9: (-117.481,-40.364,-68.063)
O5': (-117.226,-41.453,-64.195)
O3': (-120.398,-40.168,-64.714)
Image (generated by PyMOL):