Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1SDS:E3:E4
Extra
PDB:
ATOM 1 O3' U A 2 4.319 -18.410 52.733 1.00 28.34 O
ATOM 2 P G A 3 5.395 -18.965 53.789 1.00 29.52 P
ATOM 3 OP1 G A 3 6.460 -19.658 53.014 1.00 33.86 O
ATOM 4 OP2 G A 3 4.647 -19.705 54.834 1.00 28.68 O
ATOM 5 O5' G A 3 6.024 -17.650 54.438 1.00 25.48 O
ATOM 6 C5' G A 3 6.565 -16.623 53.612 1.00 27.02 C
ATOM 7 C4' G A 3 6.755 -15.328 54.385 1.00 23.52 C
ATOM 8 O4' G A 3 5.512 -14.965 55.055 1.00 25.11 O
ATOM 9 C3' G A 3 7.793 -15.503 55.498 1.00 24.09 C
ATOM 10 O3' G A 3 8.657 -14.380 55.592 1.00 23.94 O
ATOM 11 C2' G A 3 6.998 -15.732 56.776 1.00 24.07 C
ATOM 12 O2' G A 3 7.563 -15.116 57.911 1.00 27.37 O
ATOM 13 C1' G A 3 5.701 -14.998 56.451 1.00 23.81 C
ATOM 14 N9 G A 3 4.533 -15.499 57.156 1.00 24.10 N
ATOM 15 C8 G A 3 4.061 -16.785 57.189 1.00 22.05 C
ATOM 16 N7 G A 3 3.125 -16.960 58.081 1.00 23.77 N
ATOM 17 C5 G A 3 2.935 -15.701 58.635 1.00 24.02 C
ATOM 18 C6 G A 3 2.062 -15.280 59.668 1.00 26.33 C
ATOM 19 O6 G A 3 1.273 -15.962 60.326 1.00 26.22 O
ATOM 20 N1 G A 3 2.180 -13.913 59.918 1.00 22.53 N
ATOM 21 C2 G A 3 3.033 -13.061 59.259 1.00 24.54 C
ATOM 22 N2 G A 3 2.986 -11.771 59.639 1.00 25.37 N
ATOM 23 N3 G A 3 3.869 -13.447 58.298 1.00 21.52 N
ATOM 24 C4 G A 3 3.763 -14.777 58.044 1.00 23.64 C
ATOM 25 P A A 4 10.238 -14.540 55.433 1.00 25.80 P
ATOM 26 OP1 A A 4 10.488 -15.184 54.116 1.00 24.84 O
ATOM 27 OP2 A A 4 10.787 -15.164 56.671 1.00 25.51 O
ATOM 28 O5' A A 4 10.736 -13.026 55.396 1.00 25.37 O
TER
ATOM 1 O3' G B 3 8.657 -14.380 55.592 1.00 23.94 O
ATOM 2 P A B 4 10.238 -14.540 55.433 1.00 25.80 P
ATOM 3 OP1 A B 4 10.488 -15.184 54.116 1.00 24.84 O
ATOM 4 OP2 A B 4 10.787 -15.164 56.671 1.00 25.51 O
ATOM 5 O5' A B 4 10.736 -13.026 55.396 1.00 25.37 O
ATOM 6 C5' A B 4 10.440 -12.165 54.283 1.00 23.68 C
ATOM 7 C4' A B 4 10.495 -10.703 54.704 1.00 23.03 C
ATOM 8 O4' A B 4 9.388 -10.398 55.597 1.00 23.07 O
ATOM 9 C3' A B 4 11.771 -10.443 55.511 1.00 24.58 C
ATOM 10 O3' A B 4 12.280 -9.130 55.274 1.00 25.02 O
ATOM 11 C2' A B 4 11.339 -10.551 56.973 1.00 23.04 C
ATOM 12 O2' A B 4 12.036 -9.703 57.856 1.00 25.87 O
ATOM 13 C1' A B 4 9.893 -10.077 56.868 1.00 23.63 C
ATOM 14 N9 A B 4 8.927 -10.389 57.914 1.00 22.45 N
ATOM 15 C8 A B 4 8.181 -11.518 58.109 1.00 22.69 C
ATOM 16 N7 A B 4 7.416 -11.463 59.171 1.00 22.31 N
ATOM 17 C5 A B 4 7.672 -10.209 59.707 1.00 21.28 C
ATOM 18 C6 A B 4 7.170 -9.544 60.843 1.00 23.86 C
ATOM 19 N6 A B 4 6.280 -10.084 61.681 1.00 22.65 N
ATOM 20 N1 A B 4 7.622 -8.295 61.092 1.00 23.47 N
ATOM 21 C2 A B 4 8.525 -7.762 60.252 1.00 25.45 C
ATOM 22 N3 A B 4 9.074 -8.292 59.157 1.00 24.84 N
ATOM 23 C4 A B 4 8.597 -9.533 58.940 1.00 24.33 C
ATOM 24 P U B 5 13.426 -8.860 54.186 1.00 27.02 P
ATOM 25 OP1 U B 5 14.289 -10.067 54.067 1.00 28.90 O
ATOM 26 OP2 U B 5 14.017 -7.569 54.603 1.00 26.83 O
ATOM 27 O5' U B 5 12.640 -8.657 52.814 1.00 29.07 O
TER
ATOM 2 P G A 3 5.395 -18.965 53.789 1.00 29.52 P
ATOM 3 OP1 G A 3 6.460 -19.658 53.014 1.00 33.86 O
ATOM 4 OP2 G A 3 4.647 -19.705 54.834 1.00 28.68 O
ATOM 5 O5' G A 3 6.024 -17.650 54.438 1.00 25.48 O
ATOM 6 C5' G A 3 6.565 -16.623 53.612 1.00 27.02 C
ATOM 7 C4' G A 3 6.755 -15.328 54.385 1.00 23.52 C
ATOM 8 O4' G A 3 5.512 -14.965 55.055 1.00 25.11 O
ATOM 9 C3' G A 3 7.793 -15.503 55.498 1.00 24.09 C
ATOM 10 O3' G A 3 8.657 -14.380 55.592 1.00 23.94 O
ATOM 11 C2' G A 3 6.998 -15.732 56.776 1.00 24.07 C
ATOM 12 O2' G A 3 7.563 -15.116 57.911 1.00 27.37 O
ATOM 13 C1' G A 3 5.701 -14.998 56.451 1.00 23.81 C
ATOM 14 N9 G A 3 4.533 -15.499 57.156 1.00 24.10 N
ATOM 15 C8 G A 3 4.061 -16.785 57.189 1.00 22.05 C
ATOM 16 N7 G A 3 3.125 -16.960 58.081 1.00 23.77 N
ATOM 17 C5 G A 3 2.935 -15.701 58.635 1.00 24.02 C
ATOM 18 C6 G A 3 2.062 -15.280 59.668 1.00 26.33 C
ATOM 19 O6 G A 3 1.273 -15.962 60.326 1.00 26.22 O
ATOM 20 N1 G A 3 2.180 -13.913 59.918 1.00 22.53 N
ATOM 21 C2 G A 3 3.033 -13.061 59.259 1.00 24.54 C
ATOM 22 N2 G A 3 2.986 -11.771 59.639 1.00 25.37 N
ATOM 23 N3 G A 3 3.869 -13.447 58.298 1.00 21.52 N
ATOM 24 C4 G A 3 3.763 -14.777 58.044 1.00 23.64 C
ATOM 25 P A A 4 10.238 -14.540 55.433 1.00 25.80 P
ATOM 26 OP1 A A 4 10.488 -15.184 54.116 1.00 24.84 O
ATOM 27 OP2 A A 4 10.787 -15.164 56.671 1.00 25.51 O
ATOM 28 O5' A A 4 10.736 -13.026 55.396 1.00 25.37 O
TER
ATOM 1 O3' G B 3 8.657 -14.380 55.592 1.00 23.94 O
ATOM 2 P A B 4 10.238 -14.540 55.433 1.00 25.80 P
ATOM 3 OP1 A B 4 10.488 -15.184 54.116 1.00 24.84 O
ATOM 4 OP2 A B 4 10.787 -15.164 56.671 1.00 25.51 O
ATOM 5 O5' A B 4 10.736 -13.026 55.396 1.00 25.37 O
ATOM 6 C5' A B 4 10.440 -12.165 54.283 1.00 23.68 C
ATOM 7 C4' A B 4 10.495 -10.703 54.704 1.00 23.03 C
ATOM 8 O4' A B 4 9.388 -10.398 55.597 1.00 23.07 O
ATOM 9 C3' A B 4 11.771 -10.443 55.511 1.00 24.58 C
ATOM 10 O3' A B 4 12.280 -9.130 55.274 1.00 25.02 O
ATOM 11 C2' A B 4 11.339 -10.551 56.973 1.00 23.04 C
ATOM 12 O2' A B 4 12.036 -9.703 57.856 1.00 25.87 O
ATOM 13 C1' A B 4 9.893 -10.077 56.868 1.00 23.63 C
ATOM 14 N9 A B 4 8.927 -10.389 57.914 1.00 22.45 N
ATOM 15 C8 A B 4 8.181 -11.518 58.109 1.00 22.69 C
ATOM 16 N7 A B 4 7.416 -11.463 59.171 1.00 22.31 N
ATOM 17 C5 A B 4 7.672 -10.209 59.707 1.00 21.28 C
ATOM 18 C6 A B 4 7.170 -9.544 60.843 1.00 23.86 C
ATOM 19 N6 A B 4 6.280 -10.084 61.681 1.00 22.65 N
ATOM 20 N1 A B 4 7.622 -8.295 61.092 1.00 23.47 N
ATOM 21 C2 A B 4 8.525 -7.762 60.252 1.00 25.45 C
ATOM 22 N3 A B 4 9.074 -8.292 59.157 1.00 24.84 N
ATOM 23 C4 A B 4 8.597 -9.533 58.940 1.00 24.33 C
ATOM 24 P U B 5 13.426 -8.860 54.186 1.00 27.02 P
ATOM 25 OP1 U B 5 14.289 -10.067 54.067 1.00 28.90 O
ATOM 26 OP2 U B 5 14.017 -7.569 54.603 1.00 26.83 O
ATOM 27 O5' U B 5 12.640 -8.657 52.814 1.00 29.07 O
TER
Atoms:
OP1: (6.460,-19.658,53.014)
OP2: (4.647,-19.705,54.834)
C3': (7.793,-15.503,55.498)
C1': (5.701,-14.998,56.451)
C5': (6.565,-16.623,53.612)
O6: (1.273,-15.962,60.326)
O4': (5.512,-14.965,55.055)
C8: (4.061,-16.785,57.189)
C2: (3.033,-13.061,59.259)
C6: (2.062,-15.280,59.668)
C5: (2.935,-15.701,58.635)
C4: (3.763,-14.777,58.044)
P: (5.395,-18.965,53.789)
C4': (6.755,-15.328,54.385)
C2': (6.998,-15.732,56.776)
O2': (7.563,-15.116,57.911)
N1: (2.180,-13.913,59.918)
N2: (2.986,-11.771,59.639)
N3: (3.869,-13.447,58.298)
N7: (3.125,-16.960,58.081)
N9: (4.533,-15.499,57.156)
O5': (6.024,-17.650,54.438)
O3': (8.657,-14.380,55.592)
OP2: (4.647,-19.705,54.834)
C3': (7.793,-15.503,55.498)
C1': (5.701,-14.998,56.451)
C5': (6.565,-16.623,53.612)
O6: (1.273,-15.962,60.326)
O4': (5.512,-14.965,55.055)
C8: (4.061,-16.785,57.189)
C2: (3.033,-13.061,59.259)
C6: (2.062,-15.280,59.668)
C5: (2.935,-15.701,58.635)
C4: (3.763,-14.777,58.044)
P: (5.395,-18.965,53.789)
C4': (6.755,-15.328,54.385)
C2': (6.998,-15.732,56.776)
O2': (7.563,-15.116,57.911)
N1: (2.180,-13.913,59.918)
N2: (2.986,-11.771,59.639)
N3: (3.869,-13.447,58.298)
N7: (3.125,-16.960,58.081)
N9: (4.533,-15.499,57.156)
O5': (6.024,-17.650,54.438)
O3': (8.657,-14.380,55.592)
OP1: (10.488,-15.184,54.116)
OP2: (10.787,-15.164,56.671)
C3': (11.771,-10.443,55.511)
C1': (9.893,-10.077,56.868)
C5': (10.440,-12.165,54.283)
O4': (9.388,-10.398,55.597)
C8: (8.181,-11.518,58.109)
O2': (12.036,-9.703,57.856)
C6: (7.170,-9.544,60.843)
C5: (7.672,-10.209,59.707)
C4: (8.597,-9.533,58.940)
P: (10.238,-14.540,55.433)
C4': (10.495,-10.703,54.704)
C2': (11.339,-10.551,56.973)
C2: (8.525,-7.762,60.252)
N1: (7.622,-8.295,61.092)
N3: (9.074,-8.292,59.157)
N6: (6.280,-10.084,61.681)
N7: (7.416,-11.463,59.171)
N9: (8.927,-10.389,57.914)
O5': (10.736,-13.026,55.396)
O3': (12.280,-9.130,55.274)
OP2: (10.787,-15.164,56.671)
C3': (11.771,-10.443,55.511)
C1': (9.893,-10.077,56.868)
C5': (10.440,-12.165,54.283)
O4': (9.388,-10.398,55.597)
C8: (8.181,-11.518,58.109)
O2': (12.036,-9.703,57.856)
C6: (7.170,-9.544,60.843)
C5: (7.672,-10.209,59.707)
C4: (8.597,-9.533,58.940)
P: (10.238,-14.540,55.433)
C4': (10.495,-10.703,54.704)
C2': (11.339,-10.551,56.973)
C2: (8.525,-7.762,60.252)
N1: (7.622,-8.295,61.092)
N3: (9.074,-8.292,59.157)
N6: (6.280,-10.084,61.681)
N7: (7.416,-11.463,59.171)
N9: (8.927,-10.389,57.914)
O5': (10.736,-13.026,55.396)
O3': (12.280,-9.130,55.274)
Image (generated by PyMOL):