Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0500:0501
Extra
PDB:
ATOM 1 O3' A A 499 23.787 152.499 62.528 1.00 59.99 O
ATOM 2 P G A 500 23.909 153.790 63.480 1.00 57.53 P
ATOM 3 OP1 G A 500 25.045 153.534 64.396 1.00 57.09 O
ATOM 4 OP2 G A 500 22.576 154.129 64.051 1.00 55.36 O
ATOM 5 O5' G A 500 24.336 154.945 62.479 1.00 55.74 O
ATOM 6 C5' G A 500 25.456 154.771 61.604 1.00 57.75 C
ATOM 7 C4' G A 500 26.252 156.048 61.526 1.00 60.36 C
ATOM 8 O4' G A 500 25.488 157.060 60.822 1.00 61.09 O
ATOM 9 C3' G A 500 26.625 156.666 62.871 1.00 62.65 C
ATOM 10 O3' G A 500 27.858 157.353 62.730 1.00 65.22 O
ATOM 11 C2' G A 500 25.521 157.689 63.081 1.00 61.68 C
ATOM 12 O2' G A 500 25.919 158.740 63.935 1.00 61.11 O
ATOM 13 C1' G A 500 25.332 158.193 61.653 1.00 62.99 C
ATOM 14 N9 G A 500 24.040 158.812 61.365 1.00 65.62 N
ATOM 15 C8 G A 500 22.928 158.855 62.176 1.00 65.75 C
ATOM 16 N7 G A 500 21.937 159.519 61.649 1.00 66.69 N
ATOM 17 C5 G A 500 22.416 159.934 60.413 1.00 66.60 C
ATOM 18 C6 G A 500 21.790 160.691 59.399 1.00 65.79 C
ATOM 19 O6 G A 500 20.659 161.171 59.394 1.00 65.89 O
ATOM 20 N1 G A 500 22.627 160.874 58.303 1.00 66.00 N
ATOM 21 C2 G A 500 23.906 160.388 58.198 1.00 66.27 C
ATOM 22 N2 G A 500 24.554 160.658 57.057 1.00 66.33 N
ATOM 23 N3 G A 500 24.506 159.685 59.141 1.00 66.39 N
ATOM 24 C4 G A 500 23.707 159.497 60.215 1.00 66.58 C
ATOM 25 P A A 501 29.022 157.152 63.816 1.00 66.77 P
ATOM 26 OP1 A A 501 28.628 156.096 64.795 1.00 63.94 O
ATOM 27 OP2 A A 501 29.367 158.515 64.300 1.00 67.96 O
ATOM 28 O5' A A 501 30.241 156.611 62.949 1.00 66.15 O
TER
ATOM 1 O3' G B 500 27.858 157.353 62.730 1.00 65.22 O
ATOM 2 P A B 501 29.022 157.152 63.816 1.00 66.77 P
ATOM 3 OP1 A B 501 28.628 156.096 64.795 1.00 63.94 O
ATOM 4 OP2 A B 501 29.367 158.515 64.300 1.00 67.96 O
ATOM 5 O5' A B 501 30.241 156.611 62.949 1.00 66.15 O
ATOM 6 C5' A B 501 30.204 155.305 62.370 1.00 69.79 C
ATOM 7 C4' A B 501 31.030 155.276 61.117 1.00 73.85 C
ATOM 8 O4' A B 501 30.299 155.896 60.030 1.00 74.67 O
ATOM 9 C3' A B 501 32.358 156.001 61.217 1.00 77.13 C
ATOM 10 O3' A B 501 33.347 155.322 60.488 1.00 83.47 O
ATOM 11 C2' A B 501 32.065 157.357 60.600 1.00 77.43 C
ATOM 12 O2' A B 501 33.210 157.935 60.006 1.00 78.17 O
ATOM 13 C1' A B 501 30.997 157.030 59.555 1.00 75.92 C
ATOM 14 N9 A B 501 30.039 158.137 59.487 1.00 76.69 N
ATOM 15 C8 A B 501 29.063 158.437 60.414 1.00 76.31 C
ATOM 16 N7 A B 501 28.386 159.525 60.141 1.00 75.74 N
ATOM 17 C5 A B 501 28.938 159.968 58.948 1.00 75.88 C
ATOM 18 C6 A B 501 28.665 161.086 58.146 1.00 75.43 C
ATOM 19 N6 A B 501 27.741 161.998 58.446 1.00 74.78 N
ATOM 20 N1 A B 501 29.388 161.240 57.015 1.00 75.61 N
ATOM 21 C2 A B 501 30.327 160.327 56.726 1.00 76.29 C
ATOM 22 N3 A B 501 30.684 159.237 57.408 1.00 76.42 N
ATOM 23 C4 A B 501 29.945 159.113 58.522 1.00 76.49 C
ATOM 24 P G B 502 34.656 154.793 61.253 1.00 89.38 P
ATOM 25 OP1 G B 502 34.317 154.569 62.695 1.00 86.81 O
ATOM 26 OP2 G B 502 35.784 155.703 60.900 1.00 88.89 O
ATOM 27 O5' G B 502 34.925 153.375 60.574 1.00 90.86 O
TER
ATOM 2 P G A 500 23.909 153.790 63.480 1.00 57.53 P
ATOM 3 OP1 G A 500 25.045 153.534 64.396 1.00 57.09 O
ATOM 4 OP2 G A 500 22.576 154.129 64.051 1.00 55.36 O
ATOM 5 O5' G A 500 24.336 154.945 62.479 1.00 55.74 O
ATOM 6 C5' G A 500 25.456 154.771 61.604 1.00 57.75 C
ATOM 7 C4' G A 500 26.252 156.048 61.526 1.00 60.36 C
ATOM 8 O4' G A 500 25.488 157.060 60.822 1.00 61.09 O
ATOM 9 C3' G A 500 26.625 156.666 62.871 1.00 62.65 C
ATOM 10 O3' G A 500 27.858 157.353 62.730 1.00 65.22 O
ATOM 11 C2' G A 500 25.521 157.689 63.081 1.00 61.68 C
ATOM 12 O2' G A 500 25.919 158.740 63.935 1.00 61.11 O
ATOM 13 C1' G A 500 25.332 158.193 61.653 1.00 62.99 C
ATOM 14 N9 G A 500 24.040 158.812 61.365 1.00 65.62 N
ATOM 15 C8 G A 500 22.928 158.855 62.176 1.00 65.75 C
ATOM 16 N7 G A 500 21.937 159.519 61.649 1.00 66.69 N
ATOM 17 C5 G A 500 22.416 159.934 60.413 1.00 66.60 C
ATOM 18 C6 G A 500 21.790 160.691 59.399 1.00 65.79 C
ATOM 19 O6 G A 500 20.659 161.171 59.394 1.00 65.89 O
ATOM 20 N1 G A 500 22.627 160.874 58.303 1.00 66.00 N
ATOM 21 C2 G A 500 23.906 160.388 58.198 1.00 66.27 C
ATOM 22 N2 G A 500 24.554 160.658 57.057 1.00 66.33 N
ATOM 23 N3 G A 500 24.506 159.685 59.141 1.00 66.39 N
ATOM 24 C4 G A 500 23.707 159.497 60.215 1.00 66.58 C
ATOM 25 P A A 501 29.022 157.152 63.816 1.00 66.77 P
ATOM 26 OP1 A A 501 28.628 156.096 64.795 1.00 63.94 O
ATOM 27 OP2 A A 501 29.367 158.515 64.300 1.00 67.96 O
ATOM 28 O5' A A 501 30.241 156.611 62.949 1.00 66.15 O
TER
ATOM 1 O3' G B 500 27.858 157.353 62.730 1.00 65.22 O
ATOM 2 P A B 501 29.022 157.152 63.816 1.00 66.77 P
ATOM 3 OP1 A B 501 28.628 156.096 64.795 1.00 63.94 O
ATOM 4 OP2 A B 501 29.367 158.515 64.300 1.00 67.96 O
ATOM 5 O5' A B 501 30.241 156.611 62.949 1.00 66.15 O
ATOM 6 C5' A B 501 30.204 155.305 62.370 1.00 69.79 C
ATOM 7 C4' A B 501 31.030 155.276 61.117 1.00 73.85 C
ATOM 8 O4' A B 501 30.299 155.896 60.030 1.00 74.67 O
ATOM 9 C3' A B 501 32.358 156.001 61.217 1.00 77.13 C
ATOM 10 O3' A B 501 33.347 155.322 60.488 1.00 83.47 O
ATOM 11 C2' A B 501 32.065 157.357 60.600 1.00 77.43 C
ATOM 12 O2' A B 501 33.210 157.935 60.006 1.00 78.17 O
ATOM 13 C1' A B 501 30.997 157.030 59.555 1.00 75.92 C
ATOM 14 N9 A B 501 30.039 158.137 59.487 1.00 76.69 N
ATOM 15 C8 A B 501 29.063 158.437 60.414 1.00 76.31 C
ATOM 16 N7 A B 501 28.386 159.525 60.141 1.00 75.74 N
ATOM 17 C5 A B 501 28.938 159.968 58.948 1.00 75.88 C
ATOM 18 C6 A B 501 28.665 161.086 58.146 1.00 75.43 C
ATOM 19 N6 A B 501 27.741 161.998 58.446 1.00 74.78 N
ATOM 20 N1 A B 501 29.388 161.240 57.015 1.00 75.61 N
ATOM 21 C2 A B 501 30.327 160.327 56.726 1.00 76.29 C
ATOM 22 N3 A B 501 30.684 159.237 57.408 1.00 76.42 N
ATOM 23 C4 A B 501 29.945 159.113 58.522 1.00 76.49 C
ATOM 24 P G B 502 34.656 154.793 61.253 1.00 89.38 P
ATOM 25 OP1 G B 502 34.317 154.569 62.695 1.00 86.81 O
ATOM 26 OP2 G B 502 35.784 155.703 60.900 1.00 88.89 O
ATOM 27 O5' G B 502 34.925 153.375 60.574 1.00 90.86 O
TER
Atoms:
OP1: (25.045,153.534,64.396)
OP2: (22.576,154.129,64.051)
C3': (26.625,156.666,62.871)
C1': (25.332,158.193,61.653)
C5': (25.456,154.771,61.604)
O6: (20.659,161.171,59.394)
O4': (25.488,157.060,60.822)
C8: (22.928,158.855,62.176)
C2: (23.906,160.388,58.198)
C6: (21.790,160.691,59.399)
C5: (22.416,159.934,60.413)
C4: (23.707,159.497,60.215)
P: (23.909,153.790,63.480)
C4': (26.252,156.048,61.526)
C2': (25.521,157.689,63.081)
O2': (25.919,158.740,63.935)
N1: (22.627,160.874,58.303)
N2: (24.554,160.658,57.057)
N3: (24.506,159.685,59.141)
N7: (21.937,159.519,61.649)
N9: (24.040,158.812,61.365)
O5': (24.336,154.945,62.479)
O3': (27.858,157.353,62.730)
OP2: (22.576,154.129,64.051)
C3': (26.625,156.666,62.871)
C1': (25.332,158.193,61.653)
C5': (25.456,154.771,61.604)
O6: (20.659,161.171,59.394)
O4': (25.488,157.060,60.822)
C8: (22.928,158.855,62.176)
C2: (23.906,160.388,58.198)
C6: (21.790,160.691,59.399)
C5: (22.416,159.934,60.413)
C4: (23.707,159.497,60.215)
P: (23.909,153.790,63.480)
C4': (26.252,156.048,61.526)
C2': (25.521,157.689,63.081)
O2': (25.919,158.740,63.935)
N1: (22.627,160.874,58.303)
N2: (24.554,160.658,57.057)
N3: (24.506,159.685,59.141)
N7: (21.937,159.519,61.649)
N9: (24.040,158.812,61.365)
O5': (24.336,154.945,62.479)
O3': (27.858,157.353,62.730)
OP1: (28.628,156.096,64.795)
OP2: (29.367,158.515,64.300)
C3': (32.358,156.001,61.217)
C1': (30.997,157.030,59.555)
C5': (30.204,155.305,62.370)
O4': (30.299,155.896,60.030)
C8: (29.063,158.437,60.414)
O2': (33.210,157.935,60.006)
C6: (28.665,161.086,58.146)
C5: (28.938,159.968,58.948)
C4: (29.945,159.113,58.522)
P: (29.022,157.152,63.816)
C4': (31.030,155.276,61.117)
C2': (32.065,157.357,60.600)
C2: (30.327,160.327,56.726)
N1: (29.388,161.240,57.015)
N3: (30.684,159.237,57.408)
N6: (27.741,161.998,58.446)
N7: (28.386,159.525,60.141)
N9: (30.039,158.137,59.487)
O5': (30.241,156.611,62.949)
O3': (33.347,155.322,60.488)
OP2: (29.367,158.515,64.300)
C3': (32.358,156.001,61.217)
C1': (30.997,157.030,59.555)
C5': (30.204,155.305,62.370)
O4': (30.299,155.896,60.030)
C8: (29.063,158.437,60.414)
O2': (33.210,157.935,60.006)
C6: (28.665,161.086,58.146)
C5: (28.938,159.968,58.948)
C4: (29.945,159.113,58.522)
P: (29.022,157.152,63.816)
C4': (31.030,155.276,61.117)
C2': (32.065,157.357,60.600)
C2: (30.327,160.327,56.726)
N1: (29.388,161.240,57.015)
N3: (30.684,159.237,57.408)
N6: (27.741,161.998,58.446)
N7: (28.386,159.525,60.141)
N9: (30.039,158.137,59.487)
O5': (30.241,156.611,62.949)
O3': (33.347,155.322,60.488)
Image (generated by PyMOL):