Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A179:A180
Extra
PDB:
ATOM 1 O3' U A 178 -5.950 2.924 -90.612 1.00 53.31 O
ATOM 2 P A A 179 -5.780 3.962 -89.402 1.00 80.56 P
ATOM 3 OP1 A A 179 -4.878 5.040 -89.869 1.00 80.56 O
ATOM 4 OP2 A A 179 -5.388 3.177 -88.203 1.00 80.56 O
ATOM 5 O5' A A 179 -7.257 4.530 -89.237 1.00 80.56 O
ATOM 6 C5' A A 179 -7.500 5.929 -89.170 1.00 80.56 C
ATOM 7 C4' A A 179 -8.026 6.324 -87.817 1.00 80.56 C
ATOM 8 O4' A A 179 -9.290 5.627 -87.583 1.00 80.56 O
ATOM 9 C3' A A 179 -7.105 5.965 -86.638 1.00 80.56 C
ATOM 10 O3' A A 179 -7.102 7.018 -85.661 1.00 80.56 O
ATOM 11 C2' A A 179 -7.764 4.711 -86.049 1.00 80.56 C
ATOM 12 O2' A A 179 -7.511 4.495 -84.671 1.00 80.56 O
ATOM 13 C1' A A 179 -9.244 4.980 -86.324 1.00 80.56 C
ATOM 14 N9 A A 179 -10.085 3.766 -86.352 1.00 80.20 N
ATOM 15 C8 A A 179 -9.678 2.474 -86.605 1.00 80.20 C
ATOM 16 N7 A A 179 -10.628 1.577 -86.506 1.00 80.20 N
ATOM 17 C5 A A 179 -11.740 2.314 -86.136 1.00 80.20 C
ATOM 18 C6 A A 179 -13.064 1.931 -85.874 1.00 80.20 C
ATOM 19 N6 A A 179 -13.474 0.669 -85.943 1.00 80.20 N
ATOM 20 N1 A A 179 -13.950 2.890 -85.532 1.00 80.20 N
ATOM 21 C2 A A 179 -13.513 4.153 -85.462 1.00 80.20 C
ATOM 22 N3 A A 179 -12.289 4.637 -85.682 1.00 80.20 N
ATOM 23 C4 A A 179 -11.427 3.658 -86.021 1.00 80.20 C
ATOM 24 P A A 180 -6.573 8.494 -86.037 1.00 68.46 P
ATOM 25 OP1 A A 180 -5.922 8.405 -87.371 1.00 68.46 O
ATOM 26 OP2 A A 180 -5.774 8.990 -84.879 1.00 68.46 O
ATOM 27 O5' A A 180 -7.928 9.317 -86.154 1.00 68.46 O
TER
ATOM 1 O3' A B 179 -7.102 7.018 -85.661 1.00 80.56 O
ATOM 2 P A B 180 -6.573 8.494 -86.037 1.00 68.46 P
ATOM 3 OP1 A B 180 -5.922 8.405 -87.371 1.00 68.46 O
ATOM 4 OP2 A B 180 -5.774 8.990 -84.879 1.00 68.46 O
ATOM 5 O5' A B 180 -7.928 9.317 -86.154 1.00 68.46 O
ATOM 6 C5' A B 180 -7.982 10.523 -86.892 1.00 68.46 C
ATOM 7 C4' A B 180 -8.931 11.498 -86.262 1.00 68.46 C
ATOM 8 O4' A B 180 -10.145 10.793 -85.892 1.00 68.46 O
ATOM 9 C3' A B 180 -8.425 12.159 -84.981 1.00 68.46 C
ATOM 10 O3' A B 180 -8.998 13.467 -84.875 1.00 68.46 O
ATOM 11 C2' A B 180 -9.009 11.253 -83.904 1.00 68.46 C
ATOM 12 O2' A B 180 -9.113 11.842 -82.625 1.00 68.46 O
ATOM 13 C1' A B 180 -10.373 10.953 -84.507 1.00 68.46 C
ATOM 14 N9 A B 180 -11.018 9.742 -83.994 1.00 68.14 N
ATOM 15 C8 A B 180 -10.477 8.562 -83.540 1.00 68.14 C
ATOM 16 N7 A B 180 -11.389 7.695 -83.146 1.00 68.14 N
ATOM 17 C5 A B 180 -12.606 8.343 -83.350 1.00 68.14 C
ATOM 18 C6 A B 180 -13.951 7.977 -83.138 1.00 68.14 C
ATOM 19 N6 A B 180 -14.370 6.802 -82.643 1.00 68.14 N
ATOM 20 N1 A B 180 -14.890 8.891 -83.461 1.00 68.14 N
ATOM 21 C2 A B 180 -14.534 10.074 -83.960 1.00 68.14 C
ATOM 22 N3 A B 180 -13.315 10.527 -84.200 1.00 68.14 N
ATOM 23 C4 A B 180 -12.387 9.607 -83.869 1.00 68.14 C
ATOM 24 P C B 181 -8.156 14.688 -84.250 1.00 80.92 P
ATOM 25 OP1 C B 181 -8.196 15.795 -85.236 1.00 80.92 O
ATOM 26 OP2 C B 181 -6.837 14.148 -83.833 1.00 80.92 O
ATOM 27 O5' C B 181 -9.012 15.075 -82.965 1.00 80.92 O
TER
ATOM 2 P A A 179 -5.780 3.962 -89.402 1.00 80.56 P
ATOM 3 OP1 A A 179 -4.878 5.040 -89.869 1.00 80.56 O
ATOM 4 OP2 A A 179 -5.388 3.177 -88.203 1.00 80.56 O
ATOM 5 O5' A A 179 -7.257 4.530 -89.237 1.00 80.56 O
ATOM 6 C5' A A 179 -7.500 5.929 -89.170 1.00 80.56 C
ATOM 7 C4' A A 179 -8.026 6.324 -87.817 1.00 80.56 C
ATOM 8 O4' A A 179 -9.290 5.627 -87.583 1.00 80.56 O
ATOM 9 C3' A A 179 -7.105 5.965 -86.638 1.00 80.56 C
ATOM 10 O3' A A 179 -7.102 7.018 -85.661 1.00 80.56 O
ATOM 11 C2' A A 179 -7.764 4.711 -86.049 1.00 80.56 C
ATOM 12 O2' A A 179 -7.511 4.495 -84.671 1.00 80.56 O
ATOM 13 C1' A A 179 -9.244 4.980 -86.324 1.00 80.56 C
ATOM 14 N9 A A 179 -10.085 3.766 -86.352 1.00 80.20 N
ATOM 15 C8 A A 179 -9.678 2.474 -86.605 1.00 80.20 C
ATOM 16 N7 A A 179 -10.628 1.577 -86.506 1.00 80.20 N
ATOM 17 C5 A A 179 -11.740 2.314 -86.136 1.00 80.20 C
ATOM 18 C6 A A 179 -13.064 1.931 -85.874 1.00 80.20 C
ATOM 19 N6 A A 179 -13.474 0.669 -85.943 1.00 80.20 N
ATOM 20 N1 A A 179 -13.950 2.890 -85.532 1.00 80.20 N
ATOM 21 C2 A A 179 -13.513 4.153 -85.462 1.00 80.20 C
ATOM 22 N3 A A 179 -12.289 4.637 -85.682 1.00 80.20 N
ATOM 23 C4 A A 179 -11.427 3.658 -86.021 1.00 80.20 C
ATOM 24 P A A 180 -6.573 8.494 -86.037 1.00 68.46 P
ATOM 25 OP1 A A 180 -5.922 8.405 -87.371 1.00 68.46 O
ATOM 26 OP2 A A 180 -5.774 8.990 -84.879 1.00 68.46 O
ATOM 27 O5' A A 180 -7.928 9.317 -86.154 1.00 68.46 O
TER
ATOM 1 O3' A B 179 -7.102 7.018 -85.661 1.00 80.56 O
ATOM 2 P A B 180 -6.573 8.494 -86.037 1.00 68.46 P
ATOM 3 OP1 A B 180 -5.922 8.405 -87.371 1.00 68.46 O
ATOM 4 OP2 A B 180 -5.774 8.990 -84.879 1.00 68.46 O
ATOM 5 O5' A B 180 -7.928 9.317 -86.154 1.00 68.46 O
ATOM 6 C5' A B 180 -7.982 10.523 -86.892 1.00 68.46 C
ATOM 7 C4' A B 180 -8.931 11.498 -86.262 1.00 68.46 C
ATOM 8 O4' A B 180 -10.145 10.793 -85.892 1.00 68.46 O
ATOM 9 C3' A B 180 -8.425 12.159 -84.981 1.00 68.46 C
ATOM 10 O3' A B 180 -8.998 13.467 -84.875 1.00 68.46 O
ATOM 11 C2' A B 180 -9.009 11.253 -83.904 1.00 68.46 C
ATOM 12 O2' A B 180 -9.113 11.842 -82.625 1.00 68.46 O
ATOM 13 C1' A B 180 -10.373 10.953 -84.507 1.00 68.46 C
ATOM 14 N9 A B 180 -11.018 9.742 -83.994 1.00 68.14 N
ATOM 15 C8 A B 180 -10.477 8.562 -83.540 1.00 68.14 C
ATOM 16 N7 A B 180 -11.389 7.695 -83.146 1.00 68.14 N
ATOM 17 C5 A B 180 -12.606 8.343 -83.350 1.00 68.14 C
ATOM 18 C6 A B 180 -13.951 7.977 -83.138 1.00 68.14 C
ATOM 19 N6 A B 180 -14.370 6.802 -82.643 1.00 68.14 N
ATOM 20 N1 A B 180 -14.890 8.891 -83.461 1.00 68.14 N
ATOM 21 C2 A B 180 -14.534 10.074 -83.960 1.00 68.14 C
ATOM 22 N3 A B 180 -13.315 10.527 -84.200 1.00 68.14 N
ATOM 23 C4 A B 180 -12.387 9.607 -83.869 1.00 68.14 C
ATOM 24 P C B 181 -8.156 14.688 -84.250 1.00 80.92 P
ATOM 25 OP1 C B 181 -8.196 15.795 -85.236 1.00 80.92 O
ATOM 26 OP2 C B 181 -6.837 14.148 -83.833 1.00 80.92 O
ATOM 27 O5' C B 181 -9.012 15.075 -82.965 1.00 80.92 O
TER
Atoms:
OP1: (-4.878,5.040,-89.869)
OP2: (-5.388,3.177,-88.203)
C3': (-7.105,5.965,-86.638)
C1': (-9.244,4.980,-86.324)
C5': (-7.500,5.929,-89.170)
O4': (-9.290,5.627,-87.583)
C8: (-9.678,2.474,-86.605)
O2': (-7.511,4.495,-84.671)
C6: (-13.064,1.931,-85.874)
C5: (-11.740,2.314,-86.136)
C4: (-11.427,3.658,-86.021)
P: (-5.780,3.962,-89.402)
C4': (-8.026,6.324,-87.817)
C2': (-7.764,4.711,-86.049)
C2: (-13.513,4.153,-85.462)
N1: (-13.950,2.890,-85.532)
N3: (-12.289,4.637,-85.682)
N6: (-13.474,0.669,-85.943)
N7: (-10.628,1.577,-86.506)
N9: (-10.085,3.766,-86.352)
O5': (-7.257,4.530,-89.237)
O3': (-7.102,7.018,-85.661)
OP2: (-5.388,3.177,-88.203)
C3': (-7.105,5.965,-86.638)
C1': (-9.244,4.980,-86.324)
C5': (-7.500,5.929,-89.170)
O4': (-9.290,5.627,-87.583)
C8: (-9.678,2.474,-86.605)
O2': (-7.511,4.495,-84.671)
C6: (-13.064,1.931,-85.874)
C5: (-11.740,2.314,-86.136)
C4: (-11.427,3.658,-86.021)
P: (-5.780,3.962,-89.402)
C4': (-8.026,6.324,-87.817)
C2': (-7.764,4.711,-86.049)
C2: (-13.513,4.153,-85.462)
N1: (-13.950,2.890,-85.532)
N3: (-12.289,4.637,-85.682)
N6: (-13.474,0.669,-85.943)
N7: (-10.628,1.577,-86.506)
N9: (-10.085,3.766,-86.352)
O5': (-7.257,4.530,-89.237)
O3': (-7.102,7.018,-85.661)
OP1: (-5.922,8.405,-87.371)
OP2: (-5.774,8.990,-84.879)
C3': (-8.425,12.159,-84.981)
C1': (-10.373,10.953,-84.507)
C5': (-7.982,10.523,-86.892)
O4': (-10.145,10.793,-85.892)
C8: (-10.477,8.562,-83.540)
O2': (-9.113,11.842,-82.625)
C6: (-13.951,7.977,-83.138)
C5: (-12.606,8.343,-83.350)
C4: (-12.387,9.607,-83.869)
P: (-6.573,8.494,-86.037)
C4': (-8.931,11.498,-86.262)
C2': (-9.009,11.253,-83.904)
C2: (-14.534,10.074,-83.960)
N1: (-14.890,8.891,-83.461)
N3: (-13.315,10.527,-84.200)
N6: (-14.370,6.802,-82.643)
N7: (-11.389,7.695,-83.146)
N9: (-11.018,9.742,-83.994)
O5': (-7.928,9.317,-86.154)
O3': (-8.998,13.467,-84.875)
OP2: (-5.774,8.990,-84.879)
C3': (-8.425,12.159,-84.981)
C1': (-10.373,10.953,-84.507)
C5': (-7.982,10.523,-86.892)
O4': (-10.145,10.793,-85.892)
C8: (-10.477,8.562,-83.540)
O2': (-9.113,11.842,-82.625)
C6: (-13.951,7.977,-83.138)
C5: (-12.606,8.343,-83.350)
C4: (-12.387,9.607,-83.869)
P: (-6.573,8.494,-86.037)
C4': (-8.931,11.498,-86.262)
C2': (-9.009,11.253,-83.904)
C2: (-14.534,10.074,-83.960)
N1: (-14.890,8.891,-83.461)
N3: (-13.315,10.527,-84.200)
N6: (-14.370,6.802,-82.643)
N7: (-11.389,7.695,-83.146)
N9: (-11.018,9.742,-83.994)
O5': (-7.928,9.317,-86.154)
O3': (-8.998,13.467,-84.875)
Image (generated by PyMOL):