ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3CCJ:0553:01223

Extra

PDB:
ATOM 1 O3' G A 552 -5.941 94.152 96.850 1.00 75.35 O
ATOM 2 P A A 553 -5.241 93.367 98.056 1.00 75.23 P
ATOM 3 OP1 A A 553 -5.686 91.957 97.982 1.00 75.24 O
ATOM 4 OP2 A A 553 -5.440 94.132 99.299 1.00 76.31 O
ATOM 5 O5' A A 553 -3.694 93.408 97.694 1.00 75.02 O
ATOM 6 C5' A A 553 -3.175 92.569 96.648 1.00 74.27 C
ATOM 7 C4' A A 553 -1.677 92.725 96.530 1.00 71.97 C
ATOM 8 O4' A A 553 -1.349 94.059 96.068 1.00 70.51 O
ATOM 9 C3' A A 553 -0.874 92.576 97.809 1.00 70.86 C
ATOM 10 O3' A A 553 -0.686 91.198 98.140 1.00 70.82 O
ATOM 11 C2' A A 553 0.426 93.266 97.419 1.00 69.88 C
ATOM 12 O2' A A 553 1.188 92.471 96.540 1.00 70.79 O
ATOM 13 C1' A A 553 -0.095 94.441 96.595 1.00 68.93 C
ATOM 14 N9 A A 553 -0.267 95.681 97.345 1.00 67.60 N
ATOM 15 C8 A A 553 -1.435 96.254 97.779 1.00 67.41 C
ATOM 16 N7 A A 553 -1.266 97.412 98.371 1.00 66.81 N
ATOM 17 C5 A A 553 0.108 97.608 98.334 1.00 66.22 C
ATOM 18 C6 A A 553 0.928 98.657 98.781 1.00 65.26 C
ATOM 19 N6 A A 553 0.469 99.767 99.348 1.00 65.43 N
ATOM 20 N1 A A 553 2.257 98.529 98.611 1.00 64.77 N
ATOM 21 C2 A A 553 2.721 97.430 98.013 1.00 65.30 C
ATOM 22 N3 A A 553 2.053 96.387 97.533 1.00 66.30 N
ATOM 23 C4 A A 553 0.735 96.539 97.727 1.00 66.59 C
ATOM 24 P A A 554 -0.855 90.702 99.667 1.00 71.45 P
ATOM 25 OP1 A A 554 -1.134 89.237 99.601 1.00 70.60 O
ATOM 26 OP2 A A 554 -1.803 91.603 100.384 1.00 69.47 O
ATOM 27 O5' A A 554 0.587 90.923 100.306 1.00 67.98 O
TER

ATOM 1 O3' C B1222 7.678 88.902 97.714 1.00 49.13 O
ATOM 2 P U B1223 7.329 89.091 96.175 1.00 47.69 P
ATOM 3 OP1 U B1223 6.502 87.949 95.741 1.00 46.75 O
ATOM 4 OP2 U B1223 8.592 89.375 95.487 1.00 51.20 O
ATOM 5 O5' U B1223 6.457 90.413 96.183 1.00 46.40 O
ATOM 6 C5' U B1223 5.231 90.439 96.888 1.00 47.60 C
ATOM 7 C4' U B1223 4.661 91.819 96.877 1.00 49.70 C
ATOM 8 O4' U B1223 5.502 92.700 97.654 1.00 51.19 O
ATOM 9 C3' U B1223 4.637 92.499 95.535 1.00 50.55 C
ATOM 10 O3' U B1223 3.597 92.042 94.719 1.00 54.43 O
ATOM 11 C2' U B1223 4.454 93.943 95.946 1.00 50.73 C
ATOM 12 O2' U B1223 3.141 94.202 96.373 1.00 49.73 O
ATOM 13 C1' U B1223 5.405 94.013 97.134 1.00 51.58 C
ATOM 14 N1 U B1223 6.729 94.417 96.660 1.00 54.10 N
ATOM 15 C2 U B1223 7.033 95.747 96.740 1.00 54.52 C
ATOM 16 O2 U B1223 6.268 96.557 97.223 1.00 54.70 O
ATOM 17 N3 U B1223 8.261 96.097 96.236 1.00 55.22 N
ATOM 18 C4 U B1223 9.198 95.251 95.675 1.00 56.25 C
ATOM 19 O4 U B1223 10.246 95.721 95.228 1.00 57.76 O
ATOM 20 C5 U B1223 8.814 93.869 95.647 1.00 55.69 C
ATOM 21 C6 U B1223 7.621 93.509 96.132 1.00 54.95 C
ATOM 22 P G B1224 3.754 92.143 93.131 1.00 58.48 P
ATOM 23 OP1 G B1224 2.915 91.062 92.567 1.00 59.92 O
ATOM 24 OP2 G B1224 5.194 92.201 92.796 1.00 59.51 O
ATOM 25 O5' G B1224 3.122 93.560 92.778 1.00 56.75 O
TER

Atoms:
OP1: (-5.686,91.957,97.982)
OP2: (-5.440,94.132,99.299)
C3': (-0.874,92.576,97.809)
C1': (-0.095,94.441,96.595)
C5': (-3.175,92.569,96.648)
O4': (-1.349,94.059,96.068)
C8: (-1.435,96.254,97.779)
O2': (1.188,92.471,96.540)
C6: (0.928,98.657,98.781)
C5: (0.108,97.608,98.334)
C4: (0.735,96.539,97.727)
P: (-5.241,93.367,98.056)
C4': (-1.677,92.725,96.530)
C2': (0.426,93.266,97.419)
C2: (2.721,97.430,98.013)
N1: (2.257,98.529,98.611)
N3: (2.053,96.387,97.533)
N6: (0.469,99.767,99.348)
N7: (-1.266,97.412,98.371)
N9: (-0.267,95.681,97.345)
O5': (-3.694,93.408,97.694)
O3': (-0.686,91.198,98.140)
C4: (9.198,95.251,95.675)
N3: (8.261,96.097,96.236)
OP1: (6.502,87.949,95.741)
OP2: (8.592,89.375,95.487)
C2: (7.033,95.747,96.740)
C1': (5.405,94.013,97.134)
C3': (4.637,92.499,95.535)
O5': (6.457,90.413,96.183)
O4': (5.502,92.700,97.654)
C5': (5.231,90.439,96.888)
P: (7.329,89.091,96.175)
C4': (4.661,91.819,96.877)
C2': (4.454,93.943,95.946)
O2': (3.141,94.202,96.373)
N1: (6.729,94.417,96.660)
O4: (10.246,95.721,95.228)
O2: (6.268,96.557,97.223)
C6: (7.621,93.509,96.132)
C5: (8.814,93.869,95.647)
O3': (3.597,92.042,94.719)
Image (generated by PyMOL):
PyMOL image
show in jmol