ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Q86:A553:A1223

Extra

PDB:
ATOM 1 O3' G A 552 -5.704 94.786 96.896 1.00 55.37 O
ATOM 2 P A A 553 -5.190 93.825 98.077 1.00 54.11 P
ATOM 3 OP1 A A 553 -5.780 92.481 97.852 1.00 51.95 O
ATOM 4 OP2 A A 553 -5.369 94.506 99.387 1.00 51.17 O
ATOM 5 O5' A A 553 -3.636 93.673 97.776 1.00 53.36 O
ATOM 6 C5' A A 553 -3.192 92.908 96.636 1.00 54.23 C
ATOM 7 C4' A A 553 -1.688 92.957 96.518 1.00 53.02 C
ATOM 8 O4' A A 553 -1.261 94.278 96.100 1.00 52.19 O
ATOM 9 C3' A A 553 -0.917 92.704 97.802 1.00 52.30 C
ATOM 10 O3' A A 553 -0.813 91.309 98.066 1.00 52.54 O
ATOM 11 C2' A A 553 0.426 93.343 97.485 1.00 51.49 C
ATOM 12 O2' A A 553 1.192 92.516 96.629 1.00 50.73 O
ATOM 13 C1' A A 553 -0.013 94.581 96.696 1.00 50.86 C
ATOM 14 N9 A A 553 -0.170 95.796 97.494 1.00 49.31 N
ATOM 15 C8 A A 553 -1.327 96.313 98.015 1.00 48.96 C
ATOM 16 N7 A A 553 -1.162 97.445 98.654 1.00 50.98 N
ATOM 17 C5 A A 553 0.201 97.692 98.555 1.00 50.69 C
ATOM 18 C6 A A 553 1.015 98.751 99.019 1.00 51.21 C
ATOM 19 N6 A A 553 0.556 99.804 99.699 1.00 50.69 N
ATOM 20 N1 A A 553 2.336 98.689 98.753 1.00 51.50 N
ATOM 21 C2 A A 553 2.799 97.637 98.065 1.00 52.26 C
ATOM 22 N3 A A 553 2.138 96.589 97.575 1.00 50.93 N
ATOM 23 C4 A A 553 0.826 96.677 97.856 1.00 50.24 C
ATOM 24 P A A 554 -0.904 90.767 99.579 1.00 52.76 P
ATOM 25 OP1 A A 554 -1.032 89.280 99.492 1.00 49.51 O
ATOM 26 OP2 A A 554 -1.919 91.561 100.319 1.00 51.39 O
ATOM 27 O5' A A 554 0.513 91.118 100.223 1.00 52.74 O
TER

ATOM 1 O3' C B1222 7.649 88.997 97.883 1.00 35.41 O
ATOM 2 P U B1223 7.378 89.168 96.322 1.00 35.80 P
ATOM 3 OP1 U B1223 6.586 87.991 95.893 1.00 37.65 O
ATOM 4 OP2 U B1223 8.671 89.443 95.674 1.00 35.44 O
ATOM 5 O5' U B1223 6.496 90.492 96.253 1.00 31.72 O
ATOM 6 C5' U B1223 5.194 90.520 96.839 1.00 33.04 C
ATOM 7 C4' U B1223 4.644 91.921 96.846 1.00 35.09 C
ATOM 8 O4' U B1223 5.463 92.765 97.687 1.00 36.49 O
ATOM 9 C3' U B1223 4.634 92.656 95.521 1.00 37.11 C
ATOM 10 O3' U B1223 3.546 92.274 94.703 1.00 40.64 O
ATOM 11 C2' U B1223 4.513 94.102 95.969 1.00 36.24 C
ATOM 12 O2' U B1223 3.203 94.454 96.333 1.00 33.38 O
ATOM 13 C1' U B1223 5.401 94.099 97.211 1.00 37.28 C
ATOM 14 N1 U B1223 6.756 94.548 96.875 1.00 39.84 N
ATOM 15 C2 U B1223 6.993 95.912 96.880 1.00 41.09 C
ATOM 16 O2 U B1223 6.135 96.737 97.162 1.00 37.88 O
ATOM 17 N3 U B1223 8.271 96.273 96.537 1.00 42.51 N
ATOM 18 C4 U B1223 9.305 95.433 96.196 1.00 41.00 C
ATOM 19 O4 U B1223 10.394 95.914 95.917 1.00 42.22 O
ATOM 20 C5 U B1223 8.982 94.041 96.218 1.00 40.52 C
ATOM 21 C6 U B1223 7.752 93.656 96.553 1.00 39.84 C
ATOM 22 P G B1224 3.604 92.554 93.125 1.00 43.16 P
ATOM 23 OP1 G B1224 2.663 91.577 92.499 1.00 43.07 O
ATOM 24 OP2 G B1224 5.026 92.583 92.689 1.00 43.41 O
ATOM 25 O5' G B1224 3.027 94.030 92.982 1.00 39.97 O
TER

Atoms:
OP1: (-5.780,92.481,97.852)
OP2: (-5.369,94.506,99.387)
C3': (-0.917,92.704,97.802)
C1': (-0.013,94.581,96.696)
C5': (-3.192,92.908,96.636)
O4': (-1.261,94.278,96.100)
C8: (-1.327,96.313,98.015)
O2': (1.192,92.516,96.629)
C6: (1.015,98.751,99.019)
C5: (0.201,97.692,98.555)
C4: (0.826,96.677,97.856)
P: (-5.190,93.825,98.077)
C4': (-1.688,92.957,96.518)
C2': (0.426,93.343,97.485)
C2: (2.799,97.637,98.065)
N1: (2.336,98.689,98.753)
N3: (2.138,96.589,97.575)
N6: (0.556,99.804,99.699)
N7: (-1.162,97.445,98.654)
N9: (-0.170,95.796,97.494)
O5': (-3.636,93.673,97.776)
O3': (-0.813,91.309,98.066)
C4: (9.305,95.433,96.196)
N3: (8.271,96.273,96.537)
OP1: (6.586,87.991,95.893)
OP2: (8.671,89.443,95.674)
C2: (6.993,95.912,96.880)
C1': (5.401,94.099,97.211)
C3': (4.634,92.656,95.521)
O5': (6.496,90.492,96.253)
O4': (5.463,92.765,97.687)
C5': (5.194,90.520,96.839)
P: (7.378,89.168,96.322)
C4': (4.644,91.921,96.846)
C2': (4.513,94.102,95.969)
O2': (3.203,94.454,96.333)
N1: (6.756,94.548,96.875)
O4: (10.394,95.914,95.917)
O2: (6.135,96.737,97.162)
C6: (7.752,93.656,96.553)
C5: (8.982,94.041,96.218)
O3': (3.546,92.274,94.703)
Image (generated by PyMOL):
PyMOL image
show in jmol