ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1NJI:A553:A1223

Extra

PDB:
ATOM 1 O3' G A 552 -5.770 94.590 96.613 1.00 47.53 O
ATOM 2 P A A 553 -5.249 93.667 97.814 1.00 47.63 P
ATOM 3 OP1 A A 553 -5.850 92.336 97.606 1.00 45.61 O
ATOM 4 OP2 A A 553 -5.415 94.354 99.124 1.00 45.13 O
ATOM 5 O5' A A 553 -3.702 93.508 97.486 1.00 45.90 O
ATOM 6 C5' A A 553 -3.287 92.762 96.326 1.00 46.20 C
ATOM 7 C4' A A 553 -1.793 92.817 96.171 1.00 44.11 C
ATOM 8 O4' A A 553 -1.377 94.159 95.819 1.00 43.26 O
ATOM 9 C3' A A 553 -1.032 92.528 97.446 1.00 44.06 C
ATOM 10 O3' A A 553 -0.947 91.139 97.674 1.00 44.23 O
ATOM 11 C2' A A 553 0.314 93.174 97.166 1.00 43.03 C
ATOM 12 O2' A A 553 1.126 92.372 96.331 1.00 41.61 O
ATOM 13 C1' A A 553 -0.118 94.432 96.409 1.00 42.09 C
ATOM 14 N9 A A 553 -0.251 95.637 97.226 1.00 40.70 N
ATOM 15 C8 A A 553 -1.398 96.187 97.731 1.00 40.31 C
ATOM 16 N7 A A 553 -1.208 97.327 98.352 1.00 41.35 N
ATOM 17 C5 A A 553 0.160 97.532 98.265 1.00 40.89 C
ATOM 18 C6 A A 553 0.997 98.580 98.712 1.00 40.98 C
ATOM 19 N6 A A 553 0.552 99.675 99.335 1.00 40.38 N
ATOM 20 N1 A A 553 2.320 98.466 98.482 1.00 40.10 N
ATOM 21 C2 A A 553 2.763 97.379 97.836 1.00 42.07 C
ATOM 22 N3 A A 553 2.078 96.341 97.353 1.00 41.47 N
ATOM 23 C4 A A 553 0.767 96.482 97.601 1.00 41.39 C
ATOM 24 P A A 554 -0.997 90.585 99.172 1.00 45.73 P
ATOM 25 OP1 A A 554 -1.117 89.101 99.060 1.00 44.06 O
ATOM 26 OP2 A A 554 -2.008 91.359 99.926 1.00 46.06 O
ATOM 27 O5' A A 554 0.412 90.989 99.811 1.00 44.62 O
TER

ATOM 1 O3' C B1222 7.532 88.829 97.539 1.00 30.74 O
ATOM 2 P U B1223 7.266 89.009 95.969 1.00 32.66 P
ATOM 3 OP1 U B1223 6.402 87.904 95.506 1.00 32.37 O
ATOM 4 OP2 U B1223 8.592 89.199 95.338 1.00 31.58 O
ATOM 5 O5' U B1223 6.420 90.360 95.923 1.00 27.94 O
ATOM 6 C5' U B1223 5.107 90.391 96.509 1.00 29.88 C
ATOM 7 C4' U B1223 4.528 91.787 96.497 1.00 30.97 C
ATOM 8 O4' U B1223 5.256 92.655 97.390 1.00 30.93 O
ATOM 9 C3' U B1223 4.560 92.515 95.173 1.00 32.54 C
ATOM 10 O3' U B1223 3.490 92.103 94.351 1.00 36.77 O
ATOM 11 C2' U B1223 4.393 93.959 95.601 1.00 31.64 C
ATOM 12 O2' U B1223 3.056 94.295 95.874 1.00 33.14 O
ATOM 13 C1' U B1223 5.226 93.979 96.883 1.00 32.20 C
ATOM 14 N1 U B1223 6.600 94.387 96.564 1.00 33.85 N
ATOM 15 C2 U B1223 6.872 95.735 96.574 1.00 33.59 C
ATOM 16 O2 U B1223 6.043 96.576 96.873 1.00 32.38 O
ATOM 17 N3 U B1223 8.150 96.063 96.212 1.00 34.37 N
ATOM 18 C4 U B1223 9.159 95.202 95.848 1.00 33.54 C
ATOM 19 O4 U B1223 10.227 95.664 95.455 1.00 35.71 O
ATOM 20 C5 U B1223 8.811 93.822 95.884 1.00 33.61 C
ATOM 21 C6 U B1223 7.577 93.466 96.234 1.00 34.07 C
ATOM 22 P G B1224 3.579 92.342 92.775 1.00 40.25 P
ATOM 23 OP1 G B1224 2.651 91.355 92.165 1.00 38.86 O
ATOM 24 OP2 G B1224 5.022 92.324 92.403 1.00 39.85 O
ATOM 25 O5' G B1224 2.981 93.804 92.570 1.00 38.08 O
TER

Atoms:
OP1: (-5.850,92.336,97.606)
OP2: (-5.415,94.354,99.124)
C3': (-1.032,92.528,97.446)
C1': (-0.118,94.432,96.409)
C5': (-3.287,92.762,96.326)
O4': (-1.377,94.159,95.819)
C8: (-1.398,96.187,97.731)
O2': (1.126,92.372,96.331)
C6: (0.997,98.580,98.712)
C5: (0.160,97.532,98.265)
C4: (0.767,96.482,97.601)
P: (-5.249,93.667,97.814)
C4': (-1.793,92.817,96.171)
C2': (0.314,93.174,97.166)
C2: (2.763,97.379,97.836)
N1: (2.320,98.466,98.482)
N3: (2.078,96.341,97.353)
N6: (0.552,99.675,99.335)
N7: (-1.208,97.327,98.352)
N9: (-0.251,95.637,97.226)
O5': (-3.702,93.508,97.486)
O3': (-0.947,91.139,97.674)
C4: (9.159,95.202,95.848)
N3: (8.150,96.063,96.212)
OP1: (6.402,87.904,95.506)
OP2: (8.592,89.199,95.338)
C2: (6.872,95.735,96.574)
C1': (5.226,93.979,96.883)
C3': (4.560,92.515,95.173)
O5': (6.420,90.360,95.923)
O4': (5.256,92.655,97.390)
C5': (5.107,90.391,96.509)
P: (7.266,89.009,95.969)
C4': (4.528,91.787,96.497)
C2': (4.393,93.959,95.601)
O2': (3.056,94.295,95.874)
N1: (6.600,94.387,96.564)
O4: (10.227,95.664,95.455)
O2: (6.043,96.576,96.873)
C6: (7.577,93.466,96.234)
C5: (8.811,93.822,95.884)
O3': (3.490,92.103,94.351)
Image (generated by PyMOL):
PyMOL image
show in jmol