Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12405:12404
Extra
PDB:
ATOM 1 O3' U A2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 2 P C A2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 3 OP1 C A2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 4 OP2 C A2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 5 O5' C A2405 11.769 -54.171 62.510 1.00 46.55 O
ATOM 6 C5' C A2405 10.603 -54.042 61.743 1.00 46.71 C
ATOM 7 C4' C A2405 10.663 -54.939 60.547 1.00 47.03 C
ATOM 8 O4' C A2405 11.753 -54.520 59.685 1.00 46.83 O
ATOM 9 C3' C A2405 10.958 -56.402 60.842 1.00 47.39 C
ATOM 10 O3' C A2405 9.807 -57.139 61.197 1.00 47.73 O
ATOM 11 C2' C A2405 11.603 -56.876 59.554 1.00 47.54 C
ATOM 12 O2' C A2405 10.613 -57.096 58.556 1.00 47.81 O
ATOM 13 C1' C A2405 12.421 -55.643 59.169 1.00 47.10 C
ATOM 14 N1 C A2405 13.793 -55.686 59.741 1.00 46.90 N
ATOM 15 C2 C A2405 14.699 -56.560 59.128 1.00 47.10 C
ATOM 16 O2 C A2405 14.355 -57.204 58.170 1.00 47.40 O
ATOM 17 N3 C A2405 15.961 -56.708 59.520 1.00 46.97 N
ATOM 18 C4 C A2405 16.347 -56.011 60.563 1.00 46.65 C
ATOM 19 N4 C A2405 17.608 -56.244 60.872 1.00 46.57 N
ATOM 20 C5 C A2405 15.472 -55.102 61.256 1.00 46.44 C
ATOM 21 C6 C A2405 14.216 -54.945 60.813 1.00 46.57 C
ATOM 22 P C A2406 9.939 -58.447 62.105 1.00 44.82 P
ATOM 23 OP1 C A2406 8.561 -58.904 62.416 1.00 45.12 O
ATOM 24 OP2 C A2406 10.818 -58.109 63.225 1.00 44.53 O
ATOM 25 O5' C A2406 10.658 -59.504 61.136 1.00 45.11 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
ATOM 2 P C A2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 3 OP1 C A2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 4 OP2 C A2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 5 O5' C A2405 11.769 -54.171 62.510 1.00 46.55 O
ATOM 6 C5' C A2405 10.603 -54.042 61.743 1.00 46.71 C
ATOM 7 C4' C A2405 10.663 -54.939 60.547 1.00 47.03 C
ATOM 8 O4' C A2405 11.753 -54.520 59.685 1.00 46.83 O
ATOM 9 C3' C A2405 10.958 -56.402 60.842 1.00 47.39 C
ATOM 10 O3' C A2405 9.807 -57.139 61.197 1.00 47.73 O
ATOM 11 C2' C A2405 11.603 -56.876 59.554 1.00 47.54 C
ATOM 12 O2' C A2405 10.613 -57.096 58.556 1.00 47.81 O
ATOM 13 C1' C A2405 12.421 -55.643 59.169 1.00 47.10 C
ATOM 14 N1 C A2405 13.793 -55.686 59.741 1.00 46.90 N
ATOM 15 C2 C A2405 14.699 -56.560 59.128 1.00 47.10 C
ATOM 16 O2 C A2405 14.355 -57.204 58.170 1.00 47.40 O
ATOM 17 N3 C A2405 15.961 -56.708 59.520 1.00 46.97 N
ATOM 18 C4 C A2405 16.347 -56.011 60.563 1.00 46.65 C
ATOM 19 N4 C A2405 17.608 -56.244 60.872 1.00 46.57 N
ATOM 20 C5 C A2405 15.472 -55.102 61.256 1.00 46.44 C
ATOM 21 C6 C A2405 14.216 -54.945 60.813 1.00 46.57 C
ATOM 22 P C A2406 9.939 -58.447 62.105 1.00 44.82 P
ATOM 23 OP1 C A2406 8.561 -58.904 62.416 1.00 45.12 O
ATOM 24 OP2 C A2406 10.818 -58.109 63.225 1.00 44.53 O
ATOM 25 O5' C A2406 10.658 -59.504 61.136 1.00 45.11 O
TER
ATOM 1 O3' G B2403 17.197 -47.992 65.348 1.00 45.52 O
ATOM 2 P U B2404 17.118 -49.568 65.658 1.00 52.19 P
ATOM 3 OP1 U B2404 17.309 -49.694 67.115 1.00 52.16 O
ATOM 4 OP2 U B2404 18.074 -50.277 64.748 1.00 52.30 O
ATOM 5 O5' U B2404 15.632 -49.934 65.266 1.00 52.45 O
ATOM 6 C5' U B2404 15.364 -51.074 64.492 1.00 52.80 C
ATOM 7 C4' U B2404 14.423 -50.754 63.370 1.00 52.87 C
ATOM 8 O4' U B2404 15.176 -50.343 62.202 1.00 52.74 O
ATOM 9 C3' U B2404 13.559 -51.909 62.880 1.00 53.30 C
ATOM 10 O3' U B2404 12.402 -52.088 63.669 1.00 53.44 O
ATOM 11 C2' U B2404 13.264 -51.524 61.434 1.00 53.31 C
ATOM 12 O2' U B2404 12.233 -50.565 61.373 1.00 53.20 O
ATOM 13 C1' U B2404 14.551 -50.826 61.028 1.00 53.01 C
ATOM 14 N1 U B2404 15.481 -51.733 60.330 1.00 53.18 N
ATOM 15 C2 U B2404 15.141 -52.106 59.059 1.00 53.41 C
ATOM 16 O2 U B2404 14.094 -51.719 58.539 1.00 53.47 O
ATOM 17 N3 U B2404 16.055 -52.908 58.429 1.00 53.57 N
ATOM 18 C4 U B2404 17.214 -53.377 58.950 1.00 53.53 C
ATOM 19 O4 U B2404 17.918 -54.122 58.296 1.00 53.71 O
ATOM 20 C5 U B2404 17.493 -52.928 60.250 1.00 53.29 C
ATOM 21 C6 U B2404 16.648 -52.134 60.878 1.00 53.12 C
ATOM 22 P C B2405 11.865 -53.555 63.953 1.00 46.29 P
ATOM 23 OP1 C B2405 10.502 -53.445 64.544 1.00 46.41 O
ATOM 24 OP2 C B2405 12.920 -54.256 64.722 1.00 46.32 O
ATOM 25 O5' C B2405 11.769 -54.171 62.510 1.00 46.55 O
TER
Atoms:
C2: (14.699,-56.560,59.128)
OP1: (10.502,-53.445,64.544)
OP2: (12.920,-54.256,64.722)
C4: (16.347,-56.011,60.563)
O5': (11.769,-54.171,62.510)
C3': (10.958,-56.402,60.842)
C1': (12.421,-55.643,59.169)
O4': (11.753,-54.520,59.685)
C5': (10.603,-54.042,61.743)
P: (11.865,-53.555,63.953)
O2: (14.355,-57.204,58.170)
C4': (10.663,-54.939,60.547)
C2': (11.603,-56.876,59.554)
O2': (10.613,-57.096,58.556)
N1: (13.793,-55.686,59.741)
N3: (15.961,-56.708,59.520)
N4: (17.608,-56.244,60.872)
C6: (14.216,-54.945,60.813)
C5: (15.472,-55.102,61.256)
O3': (9.807,-57.139,61.197)
OP1: (10.502,-53.445,64.544)
OP2: (12.920,-54.256,64.722)
C4: (16.347,-56.011,60.563)
O5': (11.769,-54.171,62.510)
C3': (10.958,-56.402,60.842)
C1': (12.421,-55.643,59.169)
O4': (11.753,-54.520,59.685)
C5': (10.603,-54.042,61.743)
P: (11.865,-53.555,63.953)
O2: (14.355,-57.204,58.170)
C4': (10.663,-54.939,60.547)
C2': (11.603,-56.876,59.554)
O2': (10.613,-57.096,58.556)
N1: (13.793,-55.686,59.741)
N3: (15.961,-56.708,59.520)
N4: (17.608,-56.244,60.872)
C6: (14.216,-54.945,60.813)
C5: (15.472,-55.102,61.256)
O3': (9.807,-57.139,61.197)
C4: (17.214,-53.377,58.950)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
N3: (16.055,-52.908,58.429)
OP1: (17.309,-49.694,67.115)
OP2: (18.074,-50.277,64.748)
C2: (15.141,-52.106,59.059)
C1': (14.551,-50.826,61.028)
C3': (13.559,-51.909,62.880)
O5': (15.632,-49.934,65.266)
O4': (15.176,-50.343,62.202)
C5': (15.364,-51.074,64.492)
P: (17.118,-49.568,65.658)
C4': (14.423,-50.754,63.370)
C2': (13.264,-51.524,61.434)
O2': (12.233,-50.565,61.373)
N1: (15.481,-51.733,60.330)
O4: (17.918,-54.122,58.296)
O2: (14.094,-51.719,58.539)
C6: (16.648,-52.134,60.878)
C5: (17.493,-52.928,60.250)
O3': (12.402,-52.088,63.669)
Image (generated by PyMOL):