Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M53:M101
Extra
PDB:
ATOM 1 O3' U A 52 -45.767 33.638 -57.593 1.00 91.78 O
ATOM 2 P A A 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 3 OP1 A A 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 4 OP2 A A 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 5 O5' A A 53 -46.630 32.344 -59.696 1.00 88.36 O
ATOM 6 C5' A A 53 -46.264 31.129 -59.085 1.00 81.66 C
ATOM 7 C4' A A 53 -44.999 30.570 -59.692 1.00 78.87 C
ATOM 8 O4' A A 53 -43.878 31.488 -59.624 1.00 76.87 O
ATOM 9 C3' A A 53 -44.593 29.345 -58.908 1.00 77.32 C
ATOM 10 O3' A A 53 -44.941 28.210 -59.644 1.00 78.58 O
ATOM 11 C2' A A 53 -43.089 29.439 -58.678 1.00 76.13 C
ATOM 12 O2' A A 53 -42.330 28.452 -59.343 1.00 77.65 O
ATOM 13 C1' A A 53 -42.709 30.822 -59.175 1.00 74.37 C
ATOM 14 N9 A A 53 -42.157 31.485 -58.018 1.00 72.82 N
ATOM 15 C8 A A 53 -42.762 32.411 -57.202 1.00 72.92 C
ATOM 16 N7 A A 53 -42.011 32.837 -56.209 1.00 70.91 N
ATOM 17 C5 A A 53 -40.845 32.121 -56.382 1.00 70.13 C
ATOM 18 C6 A A 53 -39.642 32.103 -55.662 1.00 69.02 C
ATOM 19 N6 A A 53 -39.456 32.854 -54.583 1.00 68.90 N
ATOM 20 N1 A A 53 -38.649 31.277 -56.086 1.00 69.55 N
ATOM 21 C2 A A 53 -38.856 30.497 -57.167 1.00 70.19 C
ATOM 22 N3 A A 53 -39.965 30.429 -57.928 1.00 72.12 N
ATOM 23 C4 A A 53 -40.921 31.270 -57.479 1.00 71.72 C
ATOM 24 P A A 54 -46.069 27.276 -59.016 1.00 79.87 P
ATOM 25 OP1 A A 54 -47.200 27.108 -59.947 1.00 78.02 O
ATOM 26 OP2 A A 54 -46.386 27.870 -57.690 1.00 79.71 O
ATOM 27 O5' A A 54 -45.281 25.866 -58.851 1.00 77.52 O
TER
ATOM 1 O3' G B 100 -38.375 20.781 -60.910 1.00 82.17 O
ATOM 2 P U B 101 -38.239 22.169 -61.696 1.00 75.17 P
ATOM 3 OP1 U B 101 -39.131 22.207 -62.865 1.00 76.43 O
ATOM 4 OP2 U B 101 -36.844 22.404 -62.107 1.00 72.63 O
ATOM 5 O5' U B 101 -38.726 23.293 -60.641 1.00 73.76 O
ATOM 6 C5' U B 101 -39.867 24.133 -60.953 1.00 75.49 C
ATOM 7 C4' U B 101 -39.819 25.396 -60.151 1.00 75.28 C
ATOM 8 O4' U B 101 -39.159 25.195 -58.889 1.00 73.72 O
ATOM 9 C3' U B 101 -38.987 26.532 -60.716 1.00 74.67 C
ATOM 10 O3' U B 101 -39.597 27.143 -61.831 1.00 77.16 O
ATOM 11 C2' U B 101 -38.727 27.453 -59.521 1.00 73.42 C
ATOM 12 O2' U B 101 -39.807 28.344 -59.263 1.00 75.00 O
ATOM 13 C1' U B 101 -38.517 26.391 -58.454 1.00 72.44 C
ATOM 14 N1 U B 101 -37.111 26.037 -58.209 1.00 70.00 N
ATOM 15 C2 U B 101 -36.239 26.924 -57.600 1.00 68.95 C
ATOM 16 O2 U B 101 -36.585 28.028 -57.245 1.00 71.14 O
ATOM 17 N3 U B 101 -34.987 26.441 -57.417 1.00 66.58 N
ATOM 18 C4 U B 101 -34.527 25.197 -57.784 1.00 68.19 C
ATOM 19 O4 U B 101 -33.342 24.922 -57.563 1.00 68.84 O
ATOM 20 C5 U B 101 -35.492 24.335 -58.410 1.00 69.29 C
ATOM 21 C6 U B 101 -36.730 24.774 -58.593 1.00 69.76 C
ATOM 22 P A B 102 -38.693 27.423 -63.086 1.00 77.20 P
ATOM 23 OP1 A B 102 -39.555 27.898 -64.202 1.00 78.82 O
ATOM 24 OP2 A B 102 -37.838 26.220 -63.301 1.00 74.70 O
ATOM 25 O5' A B 102 -37.894 28.676 -62.501 1.00 75.80 O
TER
ATOM 2 P A A 53 -46.275 33.795 -59.095 1.00 90.99 P
ATOM 3 OP1 A A 53 -45.055 34.330 -59.754 1.00 91.54 O
ATOM 4 OP2 A A 53 -47.563 34.524 -59.072 1.00 90.79 O
ATOM 5 O5' A A 53 -46.630 32.344 -59.696 1.00 88.36 O
ATOM 6 C5' A A 53 -46.264 31.129 -59.085 1.00 81.66 C
ATOM 7 C4' A A 53 -44.999 30.570 -59.692 1.00 78.87 C
ATOM 8 O4' A A 53 -43.878 31.488 -59.624 1.00 76.87 O
ATOM 9 C3' A A 53 -44.593 29.345 -58.908 1.00 77.32 C
ATOM 10 O3' A A 53 -44.941 28.210 -59.644 1.00 78.58 O
ATOM 11 C2' A A 53 -43.089 29.439 -58.678 1.00 76.13 C
ATOM 12 O2' A A 53 -42.330 28.452 -59.343 1.00 77.65 O
ATOM 13 C1' A A 53 -42.709 30.822 -59.175 1.00 74.37 C
ATOM 14 N9 A A 53 -42.157 31.485 -58.018 1.00 72.82 N
ATOM 15 C8 A A 53 -42.762 32.411 -57.202 1.00 72.92 C
ATOM 16 N7 A A 53 -42.011 32.837 -56.209 1.00 70.91 N
ATOM 17 C5 A A 53 -40.845 32.121 -56.382 1.00 70.13 C
ATOM 18 C6 A A 53 -39.642 32.103 -55.662 1.00 69.02 C
ATOM 19 N6 A A 53 -39.456 32.854 -54.583 1.00 68.90 N
ATOM 20 N1 A A 53 -38.649 31.277 -56.086 1.00 69.55 N
ATOM 21 C2 A A 53 -38.856 30.497 -57.167 1.00 70.19 C
ATOM 22 N3 A A 53 -39.965 30.429 -57.928 1.00 72.12 N
ATOM 23 C4 A A 53 -40.921 31.270 -57.479 1.00 71.72 C
ATOM 24 P A A 54 -46.069 27.276 -59.016 1.00 79.87 P
ATOM 25 OP1 A A 54 -47.200 27.108 -59.947 1.00 78.02 O
ATOM 26 OP2 A A 54 -46.386 27.870 -57.690 1.00 79.71 O
ATOM 27 O5' A A 54 -45.281 25.866 -58.851 1.00 77.52 O
TER
ATOM 1 O3' G B 100 -38.375 20.781 -60.910 1.00 82.17 O
ATOM 2 P U B 101 -38.239 22.169 -61.696 1.00 75.17 P
ATOM 3 OP1 U B 101 -39.131 22.207 -62.865 1.00 76.43 O
ATOM 4 OP2 U B 101 -36.844 22.404 -62.107 1.00 72.63 O
ATOM 5 O5' U B 101 -38.726 23.293 -60.641 1.00 73.76 O
ATOM 6 C5' U B 101 -39.867 24.133 -60.953 1.00 75.49 C
ATOM 7 C4' U B 101 -39.819 25.396 -60.151 1.00 75.28 C
ATOM 8 O4' U B 101 -39.159 25.195 -58.889 1.00 73.72 O
ATOM 9 C3' U B 101 -38.987 26.532 -60.716 1.00 74.67 C
ATOM 10 O3' U B 101 -39.597 27.143 -61.831 1.00 77.16 O
ATOM 11 C2' U B 101 -38.727 27.453 -59.521 1.00 73.42 C
ATOM 12 O2' U B 101 -39.807 28.344 -59.263 1.00 75.00 O
ATOM 13 C1' U B 101 -38.517 26.391 -58.454 1.00 72.44 C
ATOM 14 N1 U B 101 -37.111 26.037 -58.209 1.00 70.00 N
ATOM 15 C2 U B 101 -36.239 26.924 -57.600 1.00 68.95 C
ATOM 16 O2 U B 101 -36.585 28.028 -57.245 1.00 71.14 O
ATOM 17 N3 U B 101 -34.987 26.441 -57.417 1.00 66.58 N
ATOM 18 C4 U B 101 -34.527 25.197 -57.784 1.00 68.19 C
ATOM 19 O4 U B 101 -33.342 24.922 -57.563 1.00 68.84 O
ATOM 20 C5 U B 101 -35.492 24.335 -58.410 1.00 69.29 C
ATOM 21 C6 U B 101 -36.730 24.774 -58.593 1.00 69.76 C
ATOM 22 P A B 102 -38.693 27.423 -63.086 1.00 77.20 P
ATOM 23 OP1 A B 102 -39.555 27.898 -64.202 1.00 78.82 O
ATOM 24 OP2 A B 102 -37.838 26.220 -63.301 1.00 74.70 O
ATOM 25 O5' A B 102 -37.894 28.676 -62.501 1.00 75.80 O
TER
Atoms:
OP1: (-45.055,34.330,-59.754)
OP2: (-47.563,34.524,-59.072)
C3': (-44.593,29.345,-58.908)
C1': (-42.709,30.822,-59.175)
C5': (-46.264,31.129,-59.085)
O4': (-43.878,31.488,-59.624)
C8: (-42.762,32.411,-57.202)
O2': (-42.330,28.452,-59.343)
C6: (-39.642,32.103,-55.662)
C5: (-40.845,32.121,-56.382)
C4: (-40.921,31.270,-57.479)
P: (-46.275,33.795,-59.095)
C4': (-44.999,30.570,-59.692)
C2': (-43.089,29.439,-58.678)
C2: (-38.856,30.497,-57.167)
N1: (-38.649,31.277,-56.086)
N3: (-39.965,30.429,-57.928)
N6: (-39.456,32.854,-54.583)
N7: (-42.011,32.837,-56.209)
N9: (-42.157,31.485,-58.018)
O5': (-46.630,32.344,-59.696)
O3': (-44.941,28.210,-59.644)
OP2: (-47.563,34.524,-59.072)
C3': (-44.593,29.345,-58.908)
C1': (-42.709,30.822,-59.175)
C5': (-46.264,31.129,-59.085)
O4': (-43.878,31.488,-59.624)
C8: (-42.762,32.411,-57.202)
O2': (-42.330,28.452,-59.343)
C6: (-39.642,32.103,-55.662)
C5: (-40.845,32.121,-56.382)
C4: (-40.921,31.270,-57.479)
P: (-46.275,33.795,-59.095)
C4': (-44.999,30.570,-59.692)
C2': (-43.089,29.439,-58.678)
C2: (-38.856,30.497,-57.167)
N1: (-38.649,31.277,-56.086)
N3: (-39.965,30.429,-57.928)
N6: (-39.456,32.854,-54.583)
N7: (-42.011,32.837,-56.209)
N9: (-42.157,31.485,-58.018)
O5': (-46.630,32.344,-59.696)
O3': (-44.941,28.210,-59.644)
C4: (-34.527,25.197,-57.784)
N3: (-34.987,26.441,-57.417)
OP1: (-39.131,22.207,-62.865)
OP2: (-36.844,22.404,-62.107)
C2: (-36.239,26.924,-57.600)
C1': (-38.517,26.391,-58.454)
C3': (-38.987,26.532,-60.716)
O5': (-38.726,23.293,-60.641)
O4': (-39.159,25.195,-58.889)
C5': (-39.867,24.133,-60.953)
P: (-38.239,22.169,-61.696)
C4': (-39.819,25.396,-60.151)
C2': (-38.727,27.453,-59.521)
O2': (-39.807,28.344,-59.263)
N1: (-37.111,26.037,-58.209)
O4: (-33.342,24.922,-57.563)
O2: (-36.585,28.028,-57.245)
C6: (-36.730,24.774,-58.593)
C5: (-35.492,24.335,-58.410)
O3': (-39.597,27.143,-61.831)
N3: (-34.987,26.441,-57.417)
OP1: (-39.131,22.207,-62.865)
OP2: (-36.844,22.404,-62.107)
C2: (-36.239,26.924,-57.600)
C1': (-38.517,26.391,-58.454)
C3': (-38.987,26.532,-60.716)
O5': (-38.726,23.293,-60.641)
O4': (-39.159,25.195,-58.889)
C5': (-39.867,24.133,-60.953)
P: (-38.239,22.169,-61.696)
C4': (-39.819,25.396,-60.151)
C2': (-38.727,27.453,-59.521)
O2': (-39.807,28.344,-59.263)
N1: (-37.111,26.037,-58.209)
O4: (-33.342,24.922,-57.563)
O2: (-36.585,28.028,-57.245)
C6: (-36.730,24.774,-58.593)
C5: (-35.492,24.335,-58.410)
O3': (-39.597,27.143,-61.831)
Image (generated by PyMOL):