Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0522:02030
Extra
PDB:
ATOM 1 O3' U A 521 22.356 135.529 113.068 1.00 39.00 O
ATOM 2 P C A 522 21.569 135.087 111.741 1.00 42.46 P
ATOM 3 OP1 C A 522 20.987 136.309 111.125 1.00 43.21 O
ATOM 4 OP2 C A 522 20.690 133.921 112.041 1.00 38.56 O
ATOM 5 O5' C A 522 22.733 134.591 110.784 1.00 40.65 O
ATOM 6 C5' C A 522 23.319 133.298 110.955 1.00 42.20 C
ATOM 7 C4' C A 522 24.732 133.307 110.450 1.00 42.23 C
ATOM 8 O4' C A 522 25.479 134.322 111.154 1.00 42.68 O
ATOM 9 C3' C A 522 25.496 132.024 110.696 1.00 43.45 C
ATOM 10 O3' C A 522 25.210 131.117 109.635 1.00 43.89 O
ATOM 11 C2' C A 522 26.947 132.496 110.708 1.00 43.50 C
ATOM 12 O2' C A 522 27.481 132.631 109.405 1.00 43.41 O
ATOM 13 C1' C A 522 26.811 133.892 111.327 1.00 41.52 C
ATOM 14 N1 C A 522 27.172 134.074 112.745 1.00 40.05 N
ATOM 15 C2 C A 522 28.224 134.934 113.055 1.00 40.74 C
ATOM 16 O2 C A 522 28.853 135.467 112.131 1.00 41.67 O
ATOM 17 N3 C A 522 28.533 135.164 114.351 1.00 41.49 N
ATOM 18 C4 C A 522 27.840 134.563 115.317 1.00 41.44 C
ATOM 19 N4 C A 522 28.170 134.835 116.584 1.00 42.76 N
ATOM 20 C5 C A 522 26.778 133.660 115.031 1.00 38.89 C
ATOM 21 C6 C A 522 26.482 133.443 113.742 1.00 40.27 C
ATOM 22 P G A 523 25.502 129.550 109.815 1.00 46.53 P
ATOM 23 OP1 G A 523 24.420 128.814 109.117 1.00 47.90 O
ATOM 24 OP2 G A 523 25.777 129.256 111.254 1.00 47.55 O
ATOM 25 O5' G A 523 26.853 129.344 108.999 1.00 46.45 O
TER
ATOM 1 O3' A B2029 32.248 137.734 115.985 1.00 36.47 O
ATOM 2 P C B2030 30.980 138.481 116.625 1.00 38.46 P
ATOM 3 OP1 C B2030 31.478 139.629 117.423 1.00 37.89 O
ATOM 4 OP2 C B2030 30.110 137.455 117.272 1.00 37.09 O
ATOM 5 O5' C B2030 30.213 139.078 115.361 1.00 37.58 O
ATOM 6 C5' C B2030 29.345 138.248 114.566 1.00 36.37 C
ATOM 7 C4' C B2030 28.623 139.081 113.539 1.00 36.48 C
ATOM 8 O4' C B2030 27.798 140.079 114.197 1.00 37.86 O
ATOM 9 C3' C B2030 29.514 139.896 112.625 1.00 36.86 C
ATOM 10 O3' C B2030 30.008 139.099 111.561 1.00 37.87 O
ATOM 11 C2' C B2030 28.565 140.979 112.140 1.00 36.71 C
ATOM 12 O2' C B2030 27.699 140.492 111.140 1.00 38.63 O
ATOM 13 C1' C B2030 27.765 141.263 113.414 1.00 36.38 C
ATOM 14 N1 C B2030 28.329 142.376 114.211 1.00 35.71 N
ATOM 15 C2 C B2030 28.192 143.682 113.732 1.00 33.23 C
ATOM 16 O2 C B2030 27.564 143.873 112.687 1.00 33.77 O
ATOM 17 N3 C B2030 28.739 144.701 114.423 1.00 32.56 N
ATOM 18 C4 C B2030 29.386 144.463 115.565 1.00 33.78 C
ATOM 19 N4 C B2030 29.909 145.507 116.217 1.00 30.69 N
ATOM 20 C5 C B2030 29.524 143.148 116.092 1.00 34.37 C
ATOM 21 C6 C B2030 28.984 142.143 115.390 1.00 36.16 C
ATOM 22 P A B2031 31.385 139.500 110.841 1.00 37.62 P
ATOM 23 OP1 A B2031 31.881 138.284 110.151 1.00 38.90 O
ATOM 24 OP2 A B2031 32.254 140.192 111.822 1.00 38.04 O
ATOM 25 O5' A B2031 30.948 140.573 109.749 1.00 37.90 O
TER
ATOM 2 P C A 522 21.569 135.087 111.741 1.00 42.46 P
ATOM 3 OP1 C A 522 20.987 136.309 111.125 1.00 43.21 O
ATOM 4 OP2 C A 522 20.690 133.921 112.041 1.00 38.56 O
ATOM 5 O5' C A 522 22.733 134.591 110.784 1.00 40.65 O
ATOM 6 C5' C A 522 23.319 133.298 110.955 1.00 42.20 C
ATOM 7 C4' C A 522 24.732 133.307 110.450 1.00 42.23 C
ATOM 8 O4' C A 522 25.479 134.322 111.154 1.00 42.68 O
ATOM 9 C3' C A 522 25.496 132.024 110.696 1.00 43.45 C
ATOM 10 O3' C A 522 25.210 131.117 109.635 1.00 43.89 O
ATOM 11 C2' C A 522 26.947 132.496 110.708 1.00 43.50 C
ATOM 12 O2' C A 522 27.481 132.631 109.405 1.00 43.41 O
ATOM 13 C1' C A 522 26.811 133.892 111.327 1.00 41.52 C
ATOM 14 N1 C A 522 27.172 134.074 112.745 1.00 40.05 N
ATOM 15 C2 C A 522 28.224 134.934 113.055 1.00 40.74 C
ATOM 16 O2 C A 522 28.853 135.467 112.131 1.00 41.67 O
ATOM 17 N3 C A 522 28.533 135.164 114.351 1.00 41.49 N
ATOM 18 C4 C A 522 27.840 134.563 115.317 1.00 41.44 C
ATOM 19 N4 C A 522 28.170 134.835 116.584 1.00 42.76 N
ATOM 20 C5 C A 522 26.778 133.660 115.031 1.00 38.89 C
ATOM 21 C6 C A 522 26.482 133.443 113.742 1.00 40.27 C
ATOM 22 P G A 523 25.502 129.550 109.815 1.00 46.53 P
ATOM 23 OP1 G A 523 24.420 128.814 109.117 1.00 47.90 O
ATOM 24 OP2 G A 523 25.777 129.256 111.254 1.00 47.55 O
ATOM 25 O5' G A 523 26.853 129.344 108.999 1.00 46.45 O
TER
ATOM 1 O3' A B2029 32.248 137.734 115.985 1.00 36.47 O
ATOM 2 P C B2030 30.980 138.481 116.625 1.00 38.46 P
ATOM 3 OP1 C B2030 31.478 139.629 117.423 1.00 37.89 O
ATOM 4 OP2 C B2030 30.110 137.455 117.272 1.00 37.09 O
ATOM 5 O5' C B2030 30.213 139.078 115.361 1.00 37.58 O
ATOM 6 C5' C B2030 29.345 138.248 114.566 1.00 36.37 C
ATOM 7 C4' C B2030 28.623 139.081 113.539 1.00 36.48 C
ATOM 8 O4' C B2030 27.798 140.079 114.197 1.00 37.86 O
ATOM 9 C3' C B2030 29.514 139.896 112.625 1.00 36.86 C
ATOM 10 O3' C B2030 30.008 139.099 111.561 1.00 37.87 O
ATOM 11 C2' C B2030 28.565 140.979 112.140 1.00 36.71 C
ATOM 12 O2' C B2030 27.699 140.492 111.140 1.00 38.63 O
ATOM 13 C1' C B2030 27.765 141.263 113.414 1.00 36.38 C
ATOM 14 N1 C B2030 28.329 142.376 114.211 1.00 35.71 N
ATOM 15 C2 C B2030 28.192 143.682 113.732 1.00 33.23 C
ATOM 16 O2 C B2030 27.564 143.873 112.687 1.00 33.77 O
ATOM 17 N3 C B2030 28.739 144.701 114.423 1.00 32.56 N
ATOM 18 C4 C B2030 29.386 144.463 115.565 1.00 33.78 C
ATOM 19 N4 C B2030 29.909 145.507 116.217 1.00 30.69 N
ATOM 20 C5 C B2030 29.524 143.148 116.092 1.00 34.37 C
ATOM 21 C6 C B2030 28.984 142.143 115.390 1.00 36.16 C
ATOM 22 P A B2031 31.385 139.500 110.841 1.00 37.62 P
ATOM 23 OP1 A B2031 31.881 138.284 110.151 1.00 38.90 O
ATOM 24 OP2 A B2031 32.254 140.192 111.822 1.00 38.04 O
ATOM 25 O5' A B2031 30.948 140.573 109.749 1.00 37.90 O
TER
Atoms:
C2: (28.224,134.934,113.055)
OP1: (20.987,136.309,111.125)
OP2: (20.690,133.921,112.041)
C4: (27.840,134.563,115.317)
O5': (22.733,134.591,110.784)
C3': (25.496,132.024,110.696)
C1': (26.811,133.892,111.327)
O4': (25.479,134.322,111.154)
C5': (23.319,133.298,110.955)
P: (21.569,135.087,111.741)
O2: (28.853,135.467,112.131)
C4': (24.732,133.307,110.450)
C2': (26.947,132.496,110.708)
O2': (27.481,132.631,109.405)
N1: (27.172,134.074,112.745)
N3: (28.533,135.164,114.351)
N4: (28.170,134.835,116.584)
C6: (26.482,133.443,113.742)
C5: (26.778,133.660,115.031)
O3': (25.210,131.117,109.635)
OP1: (20.987,136.309,111.125)
OP2: (20.690,133.921,112.041)
C4: (27.840,134.563,115.317)
O5': (22.733,134.591,110.784)
C3': (25.496,132.024,110.696)
C1': (26.811,133.892,111.327)
O4': (25.479,134.322,111.154)
C5': (23.319,133.298,110.955)
P: (21.569,135.087,111.741)
O2: (28.853,135.467,112.131)
C4': (24.732,133.307,110.450)
C2': (26.947,132.496,110.708)
O2': (27.481,132.631,109.405)
N1: (27.172,134.074,112.745)
N3: (28.533,135.164,114.351)
N4: (28.170,134.835,116.584)
C6: (26.482,133.443,113.742)
C5: (26.778,133.660,115.031)
O3': (25.210,131.117,109.635)
C2: (28.192,143.682,113.732)
OP1: (31.478,139.629,117.423)
OP2: (30.110,137.455,117.272)
C4: (29.386,144.463,115.565)
O5': (30.213,139.078,115.361)
C3': (29.514,139.896,112.625)
C1': (27.765,141.263,113.414)
O4': (27.798,140.079,114.197)
C5': (29.345,138.248,114.566)
P: (30.980,138.481,116.625)
O2: (27.564,143.873,112.687)
C4': (28.623,139.081,113.539)
C2': (28.565,140.979,112.140)
O2': (27.699,140.492,111.140)
N1: (28.329,142.376,114.211)
N3: (28.739,144.701,114.423)
N4: (29.909,145.507,116.217)
C6: (28.984,142.143,115.390)
C5: (29.524,143.148,116.092)
O3': (30.008,139.099,111.561)
OP1: (31.478,139.629,117.423)
OP2: (30.110,137.455,117.272)
C4: (29.386,144.463,115.565)
O5': (30.213,139.078,115.361)
C3': (29.514,139.896,112.625)
C1': (27.765,141.263,113.414)
O4': (27.798,140.079,114.197)
C5': (29.345,138.248,114.566)
P: (30.980,138.481,116.625)
O2: (27.564,143.873,112.687)
C4': (28.623,139.081,113.539)
C2': (28.565,140.979,112.140)
O2': (27.699,140.492,111.140)
N1: (28.329,142.376,114.211)
N3: (28.739,144.701,114.423)
N4: (29.909,145.507,116.217)
C6: (28.984,142.143,115.390)
C5: (29.524,143.148,116.092)
O3': (30.008,139.099,111.561)
Image (generated by PyMOL):