ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1M90:A553:A1223

Extra

PDB:
ATOM 1 O3' G A 552 -6.053 94.162 96.546 1.00 54.15 O
ATOM 2 P A A 553 -5.492 93.239 97.737 1.00 53.92 P
ATOM 3 OP1 A A 553 -6.040 91.876 97.534 1.00 51.37 O
ATOM 4 OP2 A A 553 -5.662 93.918 99.050 1.00 50.72 O
ATOM 5 O5' A A 553 -3.939 93.130 97.405 1.00 53.27 O
ATOM 6 C5' A A 553 -3.501 92.388 96.252 1.00 52.42 C
ATOM 7 C4' A A 553 -2.001 92.449 96.116 1.00 50.90 C
ATOM 8 O4' A A 553 -1.593 93.770 95.685 1.00 50.41 O
ATOM 9 C3' A A 553 -1.193 92.205 97.378 1.00 49.31 C
ATOM 10 O3' A A 553 -1.081 90.818 97.662 1.00 48.73 O
ATOM 11 C2' A A 553 0.140 92.838 97.013 1.00 48.10 C
ATOM 12 O2' A A 553 0.887 92.016 96.140 1.00 46.56 O
ATOM 13 C1' A A 553 -0.325 94.073 96.238 1.00 47.76 C
ATOM 14 N9 A A 553 -0.472 95.274 97.055 1.00 46.58 N
ATOM 15 C8 A A 553 -1.626 95.800 97.573 1.00 45.84 C
ATOM 16 N7 A A 553 -1.447 96.917 98.230 1.00 47.20 N
ATOM 17 C5 A A 553 -0.080 97.140 98.146 1.00 47.46 C
ATOM 18 C6 A A 553 0.745 98.174 98.632 1.00 48.65 C
ATOM 19 N6 A A 553 0.294 99.230 99.313 1.00 48.30 N
ATOM 20 N1 A A 553 2.068 98.086 98.383 1.00 49.51 N
ATOM 21 C2 A A 553 2.520 97.033 97.687 1.00 48.97 C
ATOM 22 N3 A A 553 1.847 96.012 97.171 1.00 47.47 N
ATOM 23 C4 A A 553 0.534 96.126 97.438 1.00 47.47 C
ATOM 24 P A A 554 -1.207 90.306 99.181 1.00 49.99 P
ATOM 25 OP1 A A 554 -1.359 88.817 99.133 1.00 47.16 O
ATOM 26 OP2 A A 554 -2.232 91.143 99.856 1.00 47.92 O
ATOM 27 O5' A A 554 0.198 90.648 99.859 1.00 50.35 O
TER

ATOM 1 O3' C B1222 7.329 88.441 97.512 1.00 38.41 O
ATOM 2 P U B1223 7.000 88.647 95.960 1.00 39.35 P
ATOM 3 OP1 U B1223 6.141 87.519 95.520 1.00 38.06 O
ATOM 4 OP2 U B1223 8.281 88.892 95.267 1.00 37.63 O
ATOM 5 O5' U B1223 6.162 90.002 95.937 1.00 34.97 O
ATOM 6 C5' U B1223 4.831 90.036 96.447 1.00 36.18 C
ATOM 7 C4' U B1223 4.271 91.438 96.404 1.00 38.33 C
ATOM 8 O4' U B1223 5.021 92.306 97.291 1.00 40.21 O
ATOM 9 C3' U B1223 4.315 92.156 95.072 1.00 38.87 C
ATOM 10 O3' U B1223 3.259 91.750 94.225 1.00 41.29 O
ATOM 11 C2' U B1223 4.184 93.611 95.493 1.00 39.43 C
ATOM 12 O2' U B1223 2.864 93.980 95.806 1.00 38.98 O
ATOM 13 C1' U B1223 5.024 93.627 96.771 1.00 39.89 C
ATOM 14 N1 U B1223 6.410 94.021 96.482 1.00 41.48 N
ATOM 15 C2 U B1223 6.707 95.372 96.510 1.00 42.71 C
ATOM 16 O2 U B1223 5.891 96.223 96.830 1.00 40.77 O
ATOM 17 N3 U B1223 7.996 95.687 96.151 1.00 43.39 N
ATOM 18 C4 U B1223 8.994 94.805 95.786 1.00 43.29 C
ATOM 19 O4 U B1223 10.087 95.244 95.429 1.00 46.17 O
ATOM 20 C5 U B1223 8.618 93.426 95.821 1.00 41.98 C
ATOM 21 C6 U B1223 7.376 93.089 96.161 1.00 40.55 C
ATOM 22 P G B1224 3.381 91.972 92.642 1.00 44.04 P
ATOM 23 OP1 G B1224 2.491 90.967 91.998 1.00 41.94 O
ATOM 24 OP2 G B1224 4.816 92.014 92.276 1.00 47.57 O
ATOM 25 O5' G B1224 2.783 93.428 92.422 1.00 40.66 O
TER

Atoms:
OP1: (-6.040,91.876,97.534)
OP2: (-5.662,93.918,99.050)
C3': (-1.193,92.205,97.378)
C1': (-0.325,94.073,96.238)
C5': (-3.501,92.388,96.252)
O4': (-1.593,93.770,95.685)
C8: (-1.626,95.800,97.573)
O2': (0.887,92.016,96.140)
C6: (0.745,98.174,98.632)
C5: (-0.080,97.140,98.146)
C4: (0.534,96.126,97.438)
P: (-5.492,93.239,97.737)
C4': (-2.001,92.449,96.116)
C2': (0.140,92.838,97.013)
C2: (2.520,97.033,97.687)
N1: (2.068,98.086,98.383)
N3: (1.847,96.012,97.171)
N6: (0.294,99.230,99.313)
N7: (-1.447,96.917,98.230)
N9: (-0.472,95.274,97.055)
O5': (-3.939,93.130,97.405)
O3': (-1.081,90.818,97.662)
C4: (8.994,94.805,95.786)
N3: (7.996,95.687,96.151)
OP1: (6.141,87.519,95.520)
OP2: (8.281,88.892,95.267)
C2: (6.707,95.372,96.510)
C1': (5.024,93.627,96.771)
C3': (4.315,92.156,95.072)
O5': (6.162,90.002,95.937)
O4': (5.021,92.306,97.291)
C5': (4.831,90.036,96.447)
P: (7.000,88.647,95.960)
C4': (4.271,91.438,96.404)
C2': (4.184,93.611,95.493)
O2': (2.864,93.980,95.806)
N1: (6.410,94.021,96.482)
O4: (10.087,95.244,95.429)
O2: (5.891,96.223,96.830)
C6: (7.376,93.089,96.161)
C5: (8.618,93.426,95.821)
O3': (3.259,91.750,94.225)
Image (generated by PyMOL):
PyMOL image
show in jmol