Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J00:X9:X8
Extra
PDB:
ATOM 1 O3' U A 8 -53.267 90.144 91.804 1.00 24.46 O
ATOM 2 P C A 9 -52.796 89.754 90.323 1.00 36.75 P
ATOM 3 OP1 C A 9 -51.371 89.333 90.392 1.00 65.02 O
ATOM 4 OP2 C A 9 -53.198 90.837 89.391 1.00 65.02 O
ATOM 5 O5' C A 9 -53.693 88.486 89.983 1.00 19.70 O
ATOM 6 C5' C A 9 -53.445 87.233 90.625 1.00 19.70 C
ATOM 7 C4' C A 9 -54.394 86.189 90.111 1.00 19.70 C
ATOM 8 O4' C A 9 -55.737 86.526 90.529 1.00 19.70 O
ATOM 9 C3' C A 9 -54.494 86.035 88.600 1.00 19.70 C
ATOM 10 O3' C A 9 -53.480 85.198 88.049 1.00 19.70 O
ATOM 11 C2' C A 9 -55.865 85.407 88.434 1.00 19.70 C
ATOM 12 O2' C A 9 -55.800 84.013 88.665 1.00 19.70 O
ATOM 13 C1' C A 9 -56.661 86.096 89.546 1.00 19.70 C
ATOM 14 N1 C A 9 -57.402 87.271 89.042 1.00 39.43 N
ATOM 15 C2 C A 9 -58.608 87.068 88.354 1.00 39.43 C
ATOM 16 O2 C A 9 -59.058 85.909 88.246 1.00 39.43 O
ATOM 17 N3 C A 9 -59.253 88.135 87.832 1.00 39.43 N
ATOM 18 C4 C A 9 -58.752 89.359 87.988 1.00 39.43 C
ATOM 19 N4 C A 9 -59.403 90.373 87.429 1.00 39.43 N
ATOM 20 C5 C A 9 -57.557 89.598 88.716 1.00 39.43 C
ATOM 21 C6 C A 9 -56.918 88.539 89.219 1.00 39.43 C
ATOM 22 P A A 10 -53.235 85.188 86.456 1.00 47.20 P
ATOM 23 OP1 A A 10 -51.839 84.741 86.210 1.00 63.57 O
ATOM 24 OP2 A A 10 -53.686 86.495 85.911 1.00 63.57 O
ATOM 25 O5' A A 10 -54.238 84.058 85.945 1.00 53.59 O
TER
ATOM 1 O3' U B 7 -54.710 95.762 92.773 1.00 33.20 O
ATOM 2 P U B 8 -54.340 94.831 91.528 1.00 31.23 P
ATOM 3 OP1 U B 8 -52.860 94.822 91.391 1.00 69.56 O
ATOM 4 OP2 U B 8 -55.187 95.212 90.363 1.00 69.56 O
ATOM 5 O5' U B 8 -54.816 93.400 92.024 1.00 24.46 O
ATOM 6 C5' U B 8 -54.264 92.816 93.213 1.00 24.46 C
ATOM 7 C4' U B 8 -54.699 91.384 93.314 1.00 24.46 C
ATOM 8 O4' U B 8 -56.110 91.325 93.646 1.00 24.46 O
ATOM 9 C3' U B 8 -54.584 90.623 92.008 1.00 24.46 C
ATOM 10 O3' U B 8 -53.267 90.144 91.804 1.00 24.46 O
ATOM 11 C2' U B 8 -55.628 89.522 92.158 1.00 24.46 C
ATOM 12 O2' U B 8 -55.166 88.404 92.887 1.00 24.46 O
ATOM 13 C1' U B 8 -56.707 90.225 92.982 1.00 24.46 C
ATOM 14 N1 U B 8 -57.862 90.703 92.204 1.00 32.33 N
ATOM 15 C2 U B 8 -58.973 89.895 92.182 1.00 32.33 C
ATOM 16 O2 U B 8 -58.997 88.814 92.722 1.00 32.33 O
ATOM 17 N3 U B 8 -60.056 90.395 91.502 1.00 32.33 N
ATOM 18 C4 U B 8 -60.133 91.594 90.838 1.00 32.33 C
ATOM 19 O4 U B 8 -61.193 91.920 90.286 1.00 32.33 O
ATOM 20 C5 U B 8 -58.925 92.367 90.876 1.00 32.33 C
ATOM 21 C6 U B 8 -57.856 91.905 91.540 1.00 32.33 C
ATOM 22 P C B 9 -52.796 89.754 90.323 1.00 36.75 P
ATOM 23 OP1 C B 9 -51.371 89.333 90.392 1.00 65.02 O
ATOM 24 OP2 C B 9 -53.198 90.837 89.391 1.00 65.02 O
ATOM 25 O5' C B 9 -53.693 88.486 89.983 1.00 19.70 O
TER
ATOM 2 P C A 9 -52.796 89.754 90.323 1.00 36.75 P
ATOM 3 OP1 C A 9 -51.371 89.333 90.392 1.00 65.02 O
ATOM 4 OP2 C A 9 -53.198 90.837 89.391 1.00 65.02 O
ATOM 5 O5' C A 9 -53.693 88.486 89.983 1.00 19.70 O
ATOM 6 C5' C A 9 -53.445 87.233 90.625 1.00 19.70 C
ATOM 7 C4' C A 9 -54.394 86.189 90.111 1.00 19.70 C
ATOM 8 O4' C A 9 -55.737 86.526 90.529 1.00 19.70 O
ATOM 9 C3' C A 9 -54.494 86.035 88.600 1.00 19.70 C
ATOM 10 O3' C A 9 -53.480 85.198 88.049 1.00 19.70 O
ATOM 11 C2' C A 9 -55.865 85.407 88.434 1.00 19.70 C
ATOM 12 O2' C A 9 -55.800 84.013 88.665 1.00 19.70 O
ATOM 13 C1' C A 9 -56.661 86.096 89.546 1.00 19.70 C
ATOM 14 N1 C A 9 -57.402 87.271 89.042 1.00 39.43 N
ATOM 15 C2 C A 9 -58.608 87.068 88.354 1.00 39.43 C
ATOM 16 O2 C A 9 -59.058 85.909 88.246 1.00 39.43 O
ATOM 17 N3 C A 9 -59.253 88.135 87.832 1.00 39.43 N
ATOM 18 C4 C A 9 -58.752 89.359 87.988 1.00 39.43 C
ATOM 19 N4 C A 9 -59.403 90.373 87.429 1.00 39.43 N
ATOM 20 C5 C A 9 -57.557 89.598 88.716 1.00 39.43 C
ATOM 21 C6 C A 9 -56.918 88.539 89.219 1.00 39.43 C
ATOM 22 P A A 10 -53.235 85.188 86.456 1.00 47.20 P
ATOM 23 OP1 A A 10 -51.839 84.741 86.210 1.00 63.57 O
ATOM 24 OP2 A A 10 -53.686 86.495 85.911 1.00 63.57 O
ATOM 25 O5' A A 10 -54.238 84.058 85.945 1.00 53.59 O
TER
ATOM 1 O3' U B 7 -54.710 95.762 92.773 1.00 33.20 O
ATOM 2 P U B 8 -54.340 94.831 91.528 1.00 31.23 P
ATOM 3 OP1 U B 8 -52.860 94.822 91.391 1.00 69.56 O
ATOM 4 OP2 U B 8 -55.187 95.212 90.363 1.00 69.56 O
ATOM 5 O5' U B 8 -54.816 93.400 92.024 1.00 24.46 O
ATOM 6 C5' U B 8 -54.264 92.816 93.213 1.00 24.46 C
ATOM 7 C4' U B 8 -54.699 91.384 93.314 1.00 24.46 C
ATOM 8 O4' U B 8 -56.110 91.325 93.646 1.00 24.46 O
ATOM 9 C3' U B 8 -54.584 90.623 92.008 1.00 24.46 C
ATOM 10 O3' U B 8 -53.267 90.144 91.804 1.00 24.46 O
ATOM 11 C2' U B 8 -55.628 89.522 92.158 1.00 24.46 C
ATOM 12 O2' U B 8 -55.166 88.404 92.887 1.00 24.46 O
ATOM 13 C1' U B 8 -56.707 90.225 92.982 1.00 24.46 C
ATOM 14 N1 U B 8 -57.862 90.703 92.204 1.00 32.33 N
ATOM 15 C2 U B 8 -58.973 89.895 92.182 1.00 32.33 C
ATOM 16 O2 U B 8 -58.997 88.814 92.722 1.00 32.33 O
ATOM 17 N3 U B 8 -60.056 90.395 91.502 1.00 32.33 N
ATOM 18 C4 U B 8 -60.133 91.594 90.838 1.00 32.33 C
ATOM 19 O4 U B 8 -61.193 91.920 90.286 1.00 32.33 O
ATOM 20 C5 U B 8 -58.925 92.367 90.876 1.00 32.33 C
ATOM 21 C6 U B 8 -57.856 91.905 91.540 1.00 32.33 C
ATOM 22 P C B 9 -52.796 89.754 90.323 1.00 36.75 P
ATOM 23 OP1 C B 9 -51.371 89.333 90.392 1.00 65.02 O
ATOM 24 OP2 C B 9 -53.198 90.837 89.391 1.00 65.02 O
ATOM 25 O5' C B 9 -53.693 88.486 89.983 1.00 19.70 O
TER
Atoms:
C2: (-58.608,87.068,88.354)
OP1: (-51.371,89.333,90.392)
OP2: (-53.198,90.837,89.391)
C4: (-58.752,89.359,87.988)
O5': (-53.693,88.486,89.983)
C3': (-54.494,86.035,88.600)
C1': (-56.661,86.096,89.546)
O4': (-55.737,86.526,90.529)
C5': (-53.445,87.233,90.625)
P: (-52.796,89.754,90.323)
O2: (-59.058,85.909,88.246)
C4': (-54.394,86.189,90.111)
C2': (-55.865,85.407,88.434)
O2': (-55.800,84.013,88.665)
N1: (-57.402,87.271,89.042)
N3: (-59.253,88.135,87.832)
N4: (-59.403,90.373,87.429)
C6: (-56.918,88.539,89.219)
C5: (-57.557,89.598,88.716)
O3': (-53.480,85.198,88.049)
OP1: (-51.371,89.333,90.392)
OP2: (-53.198,90.837,89.391)
C4: (-58.752,89.359,87.988)
O5': (-53.693,88.486,89.983)
C3': (-54.494,86.035,88.600)
C1': (-56.661,86.096,89.546)
O4': (-55.737,86.526,90.529)
C5': (-53.445,87.233,90.625)
P: (-52.796,89.754,90.323)
O2: (-59.058,85.909,88.246)
C4': (-54.394,86.189,90.111)
C2': (-55.865,85.407,88.434)
O2': (-55.800,84.013,88.665)
N1: (-57.402,87.271,89.042)
N3: (-59.253,88.135,87.832)
N4: (-59.403,90.373,87.429)
C6: (-56.918,88.539,89.219)
C5: (-57.557,89.598,88.716)
O3': (-53.480,85.198,88.049)
C4: (-60.133,91.594,90.838)
N3: (-60.056,90.395,91.502)
OP1: (-52.860,94.822,91.391)
OP2: (-55.187,95.212,90.363)
C2: (-58.973,89.895,92.182)
C1': (-56.707,90.225,92.982)
C3': (-54.584,90.623,92.008)
O5': (-54.816,93.400,92.024)
O4': (-56.110,91.325,93.646)
C5': (-54.264,92.816,93.213)
P: (-54.340,94.831,91.528)
C4': (-54.699,91.384,93.314)
C2': (-55.628,89.522,92.158)
O2': (-55.166,88.404,92.887)
N1: (-57.862,90.703,92.204)
O4: (-61.193,91.920,90.286)
O2: (-58.997,88.814,92.722)
C6: (-57.856,91.905,91.540)
C5: (-58.925,92.367,90.876)
O3': (-53.267,90.144,91.804)
N3: (-60.056,90.395,91.502)
OP1: (-52.860,94.822,91.391)
OP2: (-55.187,95.212,90.363)
C2: (-58.973,89.895,92.182)
C1': (-56.707,90.225,92.982)
C3': (-54.584,90.623,92.008)
O5': (-54.816,93.400,92.024)
O4': (-56.110,91.325,93.646)
C5': (-54.264,92.816,93.213)
P: (-54.340,94.831,91.528)
C4': (-54.699,91.384,93.314)
C2': (-55.628,89.522,92.158)
O2': (-55.166,88.404,92.887)
N1: (-57.862,90.703,92.204)
O4: (-61.193,91.920,90.286)
O2: (-58.997,88.814,92.722)
C6: (-57.856,91.905,91.540)
C5: (-58.925,92.367,90.876)
O3': (-53.267,90.144,91.804)
Image (generated by PyMOL):