Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
397D:B3:B2
Extra
PDB:
ATOM 1 O3' U A 2 -3.585 3.422 -12.159 1.00 22.20 O
ATOM 2 P C A 3 -2.857 3.710 -13.558 1.00 21.52 P
ATOM 3 OP1 C A 3 -3.711 4.717 -14.239 1.00 24.96 O
ATOM 4 OP2 C A 3 -2.471 2.467 -14.245 1.00 22.49 O
ATOM 5 O5' C A 3 -1.473 4.428 -13.184 1.00 20.38 O
ATOM 6 C5' C A 3 -1.482 5.662 -12.447 1.00 21.19 C
ATOM 7 C4' C A 3 -0.130 5.889 -11.815 1.00 19.13 C
ATOM 8 O4' C A 3 0.193 4.823 -10.883 1.00 18.59 O
ATOM 9 C3' C A 3 1.081 5.886 -12.750 1.00 19.07 C
ATOM 10 O3' C A 3 1.178 7.121 -13.435 1.00 19.52 O
ATOM 11 C2' C A 3 2.219 5.702 -11.729 1.00 17.91 C
ATOM 12 O2' C A 3 2.395 6.863 -10.926 1.00 20.10 O
ATOM 13 C1' C A 3 1.595 4.616 -10.854 1.00 17.19 C
ATOM 14 N1 C A 3 1.851 3.234 -11.301 1.00 15.91 N
ATOM 15 C2 C A 3 3.107 2.695 -11.008 1.00 14.83 C
ATOM 16 O2 C A 3 3.915 3.423 -10.407 1.00 15.99 O
ATOM 17 N3 C A 3 3.411 1.422 -11.386 1.00 14.03 N
ATOM 18 C4 C A 3 2.488 0.716 -12.052 1.00 15.18 C
ATOM 19 N4 C A 3 2.775 -0.533 -12.396 1.00 15.45 N
ATOM 20 C5 C A 3 1.197 1.248 -12.353 1.00 16.76 C
ATOM 21 C6 C A 3 0.930 2.503 -11.990 1.00 16.15 C
ATOM 22 P U A 4 2.065 7.230 -14.767 1.00 20.06 P
ATOM 23 OP1 U A 4 1.799 8.603 -15.260 1.00 22.56 O
ATOM 24 OP2 U A 4 1.860 6.076 -15.654 1.00 22.61 O
ATOM 25 O5' U A 4 3.582 7.100 -14.260 1.00 19.58 O
TER
ATOM 1 O3' C B 1 -5.542 -2.309 -11.563 1.00 18.49 O
ATOM 2 P U B 2 -4.819 -1.442 -12.692 1.00 20.26 P
ATOM 3 OP1 U B 2 -5.880 -0.961 -13.611 1.00 24.12 O
ATOM 4 OP2 U B 2 -3.655 -2.175 -13.243 1.00 20.58 O
ATOM 5 O5' U B 2 -4.198 -0.207 -11.883 1.00 18.49 O
ATOM 6 C5' U B 2 -5.072 0.747 -11.289 1.00 19.21 C
ATOM 7 C4' U B 2 -4.249 1.744 -10.524 1.00 19.13 C
ATOM 8 O4' U B 2 -3.541 1.059 -9.445 1.00 18.34 O
ATOM 9 C3' U B 2 -3.100 2.375 -11.327 1.00 18.44 C
ATOM 10 O3' U B 2 -3.585 3.422 -12.159 1.00 22.20 O
ATOM 11 C2' U B 2 -2.242 2.931 -10.181 1.00 18.65 C
ATOM 12 O2' U B 2 -2.834 4.044 -9.555 1.00 21.52 O
ATOM 13 C1' U B 2 -2.307 1.728 -9.271 1.00 18.39 C
ATOM 14 N1 U B 2 -1.232 0.747 -9.392 1.00 16.74 N
ATOM 15 C2 U B 2 0.007 1.056 -8.850 1.00 16.44 C
ATOM 16 O2 U B 2 0.227 2.135 -8.330 1.00 17.01 O
ATOM 17 N3 U B 2 0.968 0.085 -8.984 1.00 15.70 N
ATOM 18 C4 U B 2 0.826 -1.142 -9.600 1.00 14.93 C
ATOM 19 O4 U B 2 1.789 -1.909 -9.604 1.00 16.59 O
ATOM 20 C5 U B 2 -0.451 -1.343 -10.200 1.00 15.55 C
ATOM 21 C6 U B 2 -1.430 -0.431 -10.076 1.00 16.72 C
ATOM 22 P C B 3 -2.857 3.710 -13.558 1.00 21.52 P
ATOM 23 OP1 C B 3 -3.711 4.717 -14.239 1.00 24.96 O
ATOM 24 OP2 C B 3 -2.471 2.467 -14.245 1.00 22.49 O
ATOM 25 O5' C B 3 -1.473 4.428 -13.184 1.00 20.38 O
TER
ATOM 2 P C A 3 -2.857 3.710 -13.558 1.00 21.52 P
ATOM 3 OP1 C A 3 -3.711 4.717 -14.239 1.00 24.96 O
ATOM 4 OP2 C A 3 -2.471 2.467 -14.245 1.00 22.49 O
ATOM 5 O5' C A 3 -1.473 4.428 -13.184 1.00 20.38 O
ATOM 6 C5' C A 3 -1.482 5.662 -12.447 1.00 21.19 C
ATOM 7 C4' C A 3 -0.130 5.889 -11.815 1.00 19.13 C
ATOM 8 O4' C A 3 0.193 4.823 -10.883 1.00 18.59 O
ATOM 9 C3' C A 3 1.081 5.886 -12.750 1.00 19.07 C
ATOM 10 O3' C A 3 1.178 7.121 -13.435 1.00 19.52 O
ATOM 11 C2' C A 3 2.219 5.702 -11.729 1.00 17.91 C
ATOM 12 O2' C A 3 2.395 6.863 -10.926 1.00 20.10 O
ATOM 13 C1' C A 3 1.595 4.616 -10.854 1.00 17.19 C
ATOM 14 N1 C A 3 1.851 3.234 -11.301 1.00 15.91 N
ATOM 15 C2 C A 3 3.107 2.695 -11.008 1.00 14.83 C
ATOM 16 O2 C A 3 3.915 3.423 -10.407 1.00 15.99 O
ATOM 17 N3 C A 3 3.411 1.422 -11.386 1.00 14.03 N
ATOM 18 C4 C A 3 2.488 0.716 -12.052 1.00 15.18 C
ATOM 19 N4 C A 3 2.775 -0.533 -12.396 1.00 15.45 N
ATOM 20 C5 C A 3 1.197 1.248 -12.353 1.00 16.76 C
ATOM 21 C6 C A 3 0.930 2.503 -11.990 1.00 16.15 C
ATOM 22 P U A 4 2.065 7.230 -14.767 1.00 20.06 P
ATOM 23 OP1 U A 4 1.799 8.603 -15.260 1.00 22.56 O
ATOM 24 OP2 U A 4 1.860 6.076 -15.654 1.00 22.61 O
ATOM 25 O5' U A 4 3.582 7.100 -14.260 1.00 19.58 O
TER
ATOM 1 O3' C B 1 -5.542 -2.309 -11.563 1.00 18.49 O
ATOM 2 P U B 2 -4.819 -1.442 -12.692 1.00 20.26 P
ATOM 3 OP1 U B 2 -5.880 -0.961 -13.611 1.00 24.12 O
ATOM 4 OP2 U B 2 -3.655 -2.175 -13.243 1.00 20.58 O
ATOM 5 O5' U B 2 -4.198 -0.207 -11.883 1.00 18.49 O
ATOM 6 C5' U B 2 -5.072 0.747 -11.289 1.00 19.21 C
ATOM 7 C4' U B 2 -4.249 1.744 -10.524 1.00 19.13 C
ATOM 8 O4' U B 2 -3.541 1.059 -9.445 1.00 18.34 O
ATOM 9 C3' U B 2 -3.100 2.375 -11.327 1.00 18.44 C
ATOM 10 O3' U B 2 -3.585 3.422 -12.159 1.00 22.20 O
ATOM 11 C2' U B 2 -2.242 2.931 -10.181 1.00 18.65 C
ATOM 12 O2' U B 2 -2.834 4.044 -9.555 1.00 21.52 O
ATOM 13 C1' U B 2 -2.307 1.728 -9.271 1.00 18.39 C
ATOM 14 N1 U B 2 -1.232 0.747 -9.392 1.00 16.74 N
ATOM 15 C2 U B 2 0.007 1.056 -8.850 1.00 16.44 C
ATOM 16 O2 U B 2 0.227 2.135 -8.330 1.00 17.01 O
ATOM 17 N3 U B 2 0.968 0.085 -8.984 1.00 15.70 N
ATOM 18 C4 U B 2 0.826 -1.142 -9.600 1.00 14.93 C
ATOM 19 O4 U B 2 1.789 -1.909 -9.604 1.00 16.59 O
ATOM 20 C5 U B 2 -0.451 -1.343 -10.200 1.00 15.55 C
ATOM 21 C6 U B 2 -1.430 -0.431 -10.076 1.00 16.72 C
ATOM 22 P C B 3 -2.857 3.710 -13.558 1.00 21.52 P
ATOM 23 OP1 C B 3 -3.711 4.717 -14.239 1.00 24.96 O
ATOM 24 OP2 C B 3 -2.471 2.467 -14.245 1.00 22.49 O
ATOM 25 O5' C B 3 -1.473 4.428 -13.184 1.00 20.38 O
TER
Atoms:
C2: (3.107,2.695,-11.008)
OP1: (-3.711,4.717,-14.239)
OP2: (-2.471,2.467,-14.245)
C4: (2.488,0.716,-12.052)
O5': (-1.473,4.428,-13.184)
C3': (1.081,5.886,-12.750)
C1': (1.595,4.616,-10.854)
O4': (0.193,4.823,-10.883)
C5': (-1.482,5.662,-12.447)
P: (-2.857,3.710,-13.558)
O2: (3.915,3.423,-10.407)
C4': (-0.130,5.889,-11.815)
C2': (2.219,5.702,-11.729)
O2': (2.395,6.863,-10.926)
N1: (1.851,3.234,-11.301)
N3: (3.411,1.422,-11.386)
N4: (2.775,-0.533,-12.396)
C6: (0.930,2.503,-11.990)
C5: (1.197,1.248,-12.353)
O3': (1.178,7.121,-13.435)
OP1: (-3.711,4.717,-14.239)
OP2: (-2.471,2.467,-14.245)
C4: (2.488,0.716,-12.052)
O5': (-1.473,4.428,-13.184)
C3': (1.081,5.886,-12.750)
C1': (1.595,4.616,-10.854)
O4': (0.193,4.823,-10.883)
C5': (-1.482,5.662,-12.447)
P: (-2.857,3.710,-13.558)
O2: (3.915,3.423,-10.407)
C4': (-0.130,5.889,-11.815)
C2': (2.219,5.702,-11.729)
O2': (2.395,6.863,-10.926)
N1: (1.851,3.234,-11.301)
N3: (3.411,1.422,-11.386)
N4: (2.775,-0.533,-12.396)
C6: (0.930,2.503,-11.990)
C5: (1.197,1.248,-12.353)
O3': (1.178,7.121,-13.435)
C4: (0.826,-1.142,-9.600)
N3: (0.968,0.085,-8.984)
OP1: (-5.880,-0.961,-13.611)
OP2: (-3.655,-2.175,-13.243)
C2: (0.007,1.056,-8.850)
C1': (-2.307,1.728,-9.271)
C3': (-3.100,2.375,-11.327)
O5': (-4.198,-0.207,-11.883)
O4': (-3.541,1.059,-9.445)
C5': (-5.072,0.747,-11.289)
P: (-4.819,-1.442,-12.692)
C4': (-4.249,1.744,-10.524)
C2': (-2.242,2.931,-10.181)
O2': (-2.834,4.044,-9.555)
N1: (-1.232,0.747,-9.392)
O4: (1.789,-1.909,-9.604)
O2: (0.227,2.135,-8.330)
C6: (-1.430,-0.431,-10.076)
C5: (-0.451,-1.343,-10.200)
O3': (-3.585,3.422,-12.159)
N3: (0.968,0.085,-8.984)
OP1: (-5.880,-0.961,-13.611)
OP2: (-3.655,-2.175,-13.243)
C2: (0.007,1.056,-8.850)
C1': (-2.307,1.728,-9.271)
C3': (-3.100,2.375,-11.327)
O5': (-4.198,-0.207,-11.883)
O4': (-3.541,1.059,-9.445)
C5': (-5.072,0.747,-11.289)
P: (-4.819,-1.442,-12.692)
C4': (-4.249,1.744,-10.524)
C2': (-2.242,2.931,-10.181)
O2': (-2.834,4.044,-9.555)
N1: (-1.232,0.747,-9.392)
O4: (1.789,-1.909,-9.604)
O2: (0.227,2.135,-8.330)
C6: (-1.430,-0.431,-10.076)
C5: (-0.451,-1.343,-10.200)
O3': (-3.585,3.422,-12.159)
Image (generated by PyMOL):