Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11970:11969
Extra
PDB:
ATOM 1 O3' U A1969 7.690 -13.083 109.293 1.00 45.55 O
ATOM 2 P C A1970 9.112 -13.813 109.072 1.00 41.98 P
ATOM 3 OP1 C A1970 9.420 -13.762 107.612 1.00 41.59 O
ATOM 4 OP2 C A1970 9.053 -15.145 109.753 1.00 42.17 O
ATOM 5 O5' C A1970 10.114 -12.855 109.859 1.00 42.06 O
ATOM 6 C5' C A1970 10.908 -11.906 109.172 1.00 41.80 C
ATOM 7 C4' C A1970 11.587 -10.957 110.122 1.00 41.98 C
ATOM 8 O4' C A1970 10.795 -10.818 111.334 1.00 42.38 O
ATOM 9 C3' C A1970 12.949 -11.366 110.657 1.00 41.97 C
ATOM 10 O3' C A1970 14.012 -11.233 109.730 1.00 41.62 O
ATOM 11 C2' C A1970 13.083 -10.449 111.849 1.00 42.28 C
ATOM 12 O2' C A1970 13.357 -9.147 111.403 1.00 42.16 O
ATOM 13 C1' C A1970 11.648 -10.480 112.406 1.00 42.58 C
ATOM 14 N1 C A1970 11.518 -11.499 113.445 1.00 42.87 N
ATOM 15 C2 C A1970 12.203 -11.218 114.639 1.00 43.14 C
ATOM 16 O2 C A1970 12.780 -10.130 114.800 1.00 43.15 O
ATOM 17 N3 C A1970 12.196 -12.126 115.621 1.00 43.42 N
ATOM 18 C4 C A1970 11.569 -13.250 115.433 1.00 43.43 C
ATOM 19 N4 C A1970 11.626 -14.047 116.475 1.00 43.73 N
ATOM 20 C5 C A1970 10.878 -13.577 114.233 1.00 43.15 C
ATOM 21 C6 C A1970 10.881 -12.687 113.246 1.00 42.88 C
ATOM 22 P A A1971 15.143 -12.373 109.700 1.00 43.82 P
ATOM 23 OP1 A A1971 15.742 -12.367 108.377 1.00 43.43 O
ATOM 24 OP2 A A1971 14.491 -13.617 110.183 1.00 44.00 O
ATOM 25 O5' A A1971 16.226 -11.891 110.776 1.00 44.00 O
TER
ATOM 1 O3' G B1968 3.448 -15.755 112.245 1.00 48.89 O
ATOM 2 P U B1969 4.814 -16.278 111.601 1.00 46.55 P
ATOM 3 OP1 U B1969 4.459 -17.033 110.407 1.00 46.31 O
ATOM 4 OP2 U B1969 5.580 -16.955 112.668 1.00 46.74 O
ATOM 5 O5' U B1969 5.560 -14.948 111.211 1.00 46.33 O
ATOM 6 C5' U B1969 4.884 -13.861 110.643 1.00 46.27 C
ATOM 7 C4' U B1969 5.732 -12.619 110.697 1.00 46.17 C
ATOM 8 O4' U B1969 5.563 -11.951 111.968 1.00 46.52 O
ATOM 9 C3' U B1969 7.229 -12.805 110.611 1.00 45.95 C
ATOM 10 O3' U B1969 7.690 -13.083 109.293 1.00 45.55 O
ATOM 11 C2' U B1969 7.703 -11.476 111.136 1.00 46.03 C
ATOM 12 O2' U B1969 7.521 -10.492 110.142 1.00 45.81 O
ATOM 13 C1' U B1969 6.701 -11.209 112.255 1.00 46.46 C
ATOM 14 N1 U B1969 7.217 -11.634 113.543 1.00 46.74 N
ATOM 15 C2 U B1969 7.819 -10.657 114.305 1.00 46.89 C
ATOM 16 O2 U B1969 7.895 -9.485 113.966 1.00 46.81 O
ATOM 17 N3 U B1969 8.344 -11.080 115.485 1.00 47.16 N
ATOM 18 C4 U B1969 8.335 -12.369 115.958 1.00 47.29 C
ATOM 19 O4 U B1969 8.857 -12.594 117.049 1.00 47.55 O
ATOM 20 C5 U B1969 7.701 -13.328 115.117 1.00 47.12 C
ATOM 21 C6 U B1969 7.185 -12.932 113.962 1.00 46.85 C
ATOM 22 P C B1970 9.112 -13.813 109.072 1.00 41.98 P
ATOM 23 OP1 C B1970 9.420 -13.762 107.612 1.00 41.59 O
ATOM 24 OP2 C B1970 9.053 -15.145 109.753 1.00 42.17 O
ATOM 25 O5' C B1970 10.114 -12.855 109.859 1.00 42.06 O
TER
ATOM 2 P C A1970 9.112 -13.813 109.072 1.00 41.98 P
ATOM 3 OP1 C A1970 9.420 -13.762 107.612 1.00 41.59 O
ATOM 4 OP2 C A1970 9.053 -15.145 109.753 1.00 42.17 O
ATOM 5 O5' C A1970 10.114 -12.855 109.859 1.00 42.06 O
ATOM 6 C5' C A1970 10.908 -11.906 109.172 1.00 41.80 C
ATOM 7 C4' C A1970 11.587 -10.957 110.122 1.00 41.98 C
ATOM 8 O4' C A1970 10.795 -10.818 111.334 1.00 42.38 O
ATOM 9 C3' C A1970 12.949 -11.366 110.657 1.00 41.97 C
ATOM 10 O3' C A1970 14.012 -11.233 109.730 1.00 41.62 O
ATOM 11 C2' C A1970 13.083 -10.449 111.849 1.00 42.28 C
ATOM 12 O2' C A1970 13.357 -9.147 111.403 1.00 42.16 O
ATOM 13 C1' C A1970 11.648 -10.480 112.406 1.00 42.58 C
ATOM 14 N1 C A1970 11.518 -11.499 113.445 1.00 42.87 N
ATOM 15 C2 C A1970 12.203 -11.218 114.639 1.00 43.14 C
ATOM 16 O2 C A1970 12.780 -10.130 114.800 1.00 43.15 O
ATOM 17 N3 C A1970 12.196 -12.126 115.621 1.00 43.42 N
ATOM 18 C4 C A1970 11.569 -13.250 115.433 1.00 43.43 C
ATOM 19 N4 C A1970 11.626 -14.047 116.475 1.00 43.73 N
ATOM 20 C5 C A1970 10.878 -13.577 114.233 1.00 43.15 C
ATOM 21 C6 C A1970 10.881 -12.687 113.246 1.00 42.88 C
ATOM 22 P A A1971 15.143 -12.373 109.700 1.00 43.82 P
ATOM 23 OP1 A A1971 15.742 -12.367 108.377 1.00 43.43 O
ATOM 24 OP2 A A1971 14.491 -13.617 110.183 1.00 44.00 O
ATOM 25 O5' A A1971 16.226 -11.891 110.776 1.00 44.00 O
TER
ATOM 1 O3' G B1968 3.448 -15.755 112.245 1.00 48.89 O
ATOM 2 P U B1969 4.814 -16.278 111.601 1.00 46.55 P
ATOM 3 OP1 U B1969 4.459 -17.033 110.407 1.00 46.31 O
ATOM 4 OP2 U B1969 5.580 -16.955 112.668 1.00 46.74 O
ATOM 5 O5' U B1969 5.560 -14.948 111.211 1.00 46.33 O
ATOM 6 C5' U B1969 4.884 -13.861 110.643 1.00 46.27 C
ATOM 7 C4' U B1969 5.732 -12.619 110.697 1.00 46.17 C
ATOM 8 O4' U B1969 5.563 -11.951 111.968 1.00 46.52 O
ATOM 9 C3' U B1969 7.229 -12.805 110.611 1.00 45.95 C
ATOM 10 O3' U B1969 7.690 -13.083 109.293 1.00 45.55 O
ATOM 11 C2' U B1969 7.703 -11.476 111.136 1.00 46.03 C
ATOM 12 O2' U B1969 7.521 -10.492 110.142 1.00 45.81 O
ATOM 13 C1' U B1969 6.701 -11.209 112.255 1.00 46.46 C
ATOM 14 N1 U B1969 7.217 -11.634 113.543 1.00 46.74 N
ATOM 15 C2 U B1969 7.819 -10.657 114.305 1.00 46.89 C
ATOM 16 O2 U B1969 7.895 -9.485 113.966 1.00 46.81 O
ATOM 17 N3 U B1969 8.344 -11.080 115.485 1.00 47.16 N
ATOM 18 C4 U B1969 8.335 -12.369 115.958 1.00 47.29 C
ATOM 19 O4 U B1969 8.857 -12.594 117.049 1.00 47.55 O
ATOM 20 C5 U B1969 7.701 -13.328 115.117 1.00 47.12 C
ATOM 21 C6 U B1969 7.185 -12.932 113.962 1.00 46.85 C
ATOM 22 P C B1970 9.112 -13.813 109.072 1.00 41.98 P
ATOM 23 OP1 C B1970 9.420 -13.762 107.612 1.00 41.59 O
ATOM 24 OP2 C B1970 9.053 -15.145 109.753 1.00 42.17 O
ATOM 25 O5' C B1970 10.114 -12.855 109.859 1.00 42.06 O
TER
Atoms:
C2: (12.203,-11.218,114.639)
OP1: (9.420,-13.762,107.612)
OP2: (9.053,-15.145,109.753)
C4: (11.569,-13.250,115.433)
O5': (10.114,-12.855,109.859)
C3': (12.949,-11.366,110.657)
C1': (11.648,-10.480,112.406)
O4': (10.795,-10.818,111.334)
C5': (10.908,-11.906,109.172)
P: (9.112,-13.813,109.072)
O2: (12.780,-10.130,114.800)
C4': (11.587,-10.957,110.122)
C2': (13.083,-10.449,111.849)
O2': (13.357,-9.147,111.403)
N1: (11.518,-11.499,113.445)
N3: (12.196,-12.126,115.621)
N4: (11.626,-14.047,116.475)
C6: (10.881,-12.687,113.246)
C5: (10.878,-13.577,114.233)
O3': (14.012,-11.233,109.730)
OP1: (9.420,-13.762,107.612)
OP2: (9.053,-15.145,109.753)
C4: (11.569,-13.250,115.433)
O5': (10.114,-12.855,109.859)
C3': (12.949,-11.366,110.657)
C1': (11.648,-10.480,112.406)
O4': (10.795,-10.818,111.334)
C5': (10.908,-11.906,109.172)
P: (9.112,-13.813,109.072)
O2: (12.780,-10.130,114.800)
C4': (11.587,-10.957,110.122)
C2': (13.083,-10.449,111.849)
O2': (13.357,-9.147,111.403)
N1: (11.518,-11.499,113.445)
N3: (12.196,-12.126,115.621)
N4: (11.626,-14.047,116.475)
C6: (10.881,-12.687,113.246)
C5: (10.878,-13.577,114.233)
O3': (14.012,-11.233,109.730)
C4: (8.335,-12.369,115.958)
N3: (8.344,-11.080,115.485)
OP1: (4.459,-17.033,110.407)
OP2: (5.580,-16.955,112.668)
C2: (7.819,-10.657,114.305)
C1': (6.701,-11.209,112.255)
C3': (7.229,-12.805,110.611)
O5': (5.560,-14.948,111.211)
O4': (5.563,-11.951,111.968)
C5': (4.884,-13.861,110.643)
P: (4.814,-16.278,111.601)
C4': (5.732,-12.619,110.697)
C2': (7.703,-11.476,111.136)
O2': (7.521,-10.492,110.142)
N1: (7.217,-11.634,113.543)
O4: (8.857,-12.594,117.049)
O2: (7.895,-9.485,113.966)
C6: (7.185,-12.932,113.962)
C5: (7.701,-13.328,115.117)
O3': (7.690,-13.083,109.293)
N3: (8.344,-11.080,115.485)
OP1: (4.459,-17.033,110.407)
OP2: (5.580,-16.955,112.668)
C2: (7.819,-10.657,114.305)
C1': (6.701,-11.209,112.255)
C3': (7.229,-12.805,110.611)
O5': (5.560,-14.948,111.211)
O4': (5.563,-11.951,111.968)
C5': (4.884,-13.861,110.643)
P: (4.814,-16.278,111.601)
C4': (5.732,-12.619,110.697)
C2': (7.703,-11.476,111.136)
O2': (7.521,-10.492,110.142)
N1: (7.217,-11.634,113.543)
O4: (8.857,-12.594,117.049)
O2: (7.895,-9.485,113.966)
C6: (7.185,-12.932,113.962)
C5: (7.701,-13.328,115.117)
O3': (7.690,-13.083,109.293)
Image (generated by PyMOL):