ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0553:01223

Extra

PDB:
ATOM 1 O3' G A 552 -5.707 94.657 96.696 1.00 58.07 O
ATOM 2 P A A 553 -5.090 93.802 97.909 1.00 57.38 P
ATOM 3 OP1 A A 553 -5.570 92.406 97.763 1.00 56.03 O
ATOM 4 OP2 A A 553 -5.276 94.512 99.205 1.00 55.82 O
ATOM 5 O5' A A 553 -3.542 93.774 97.552 1.00 56.40 O
ATOM 6 C5' A A 553 -3.087 93.089 96.369 1.00 56.14 C
ATOM 7 C4' A A 553 -1.585 93.123 96.287 1.00 53.77 C
ATOM 8 O4' A A 553 -1.145 94.445 95.899 1.00 52.32 O
ATOM 9 C3' A A 553 -0.859 92.857 97.591 1.00 53.10 C
ATOM 10 O3' A A 553 -0.769 91.466 97.867 1.00 53.44 O
ATOM 11 C2' A A 553 0.495 93.486 97.323 1.00 52.40 C
ATOM 12 O2' A A 553 1.290 92.644 96.510 1.00 51.08 O
ATOM 13 C1' A A 553 0.090 94.731 96.529 1.00 52.09 C
ATOM 14 N9 A A 553 -0.078 95.942 97.336 1.00 51.35 N
ATOM 15 C8 A A 553 -1.238 96.435 97.880 1.00 51.36 C
ATOM 16 N7 A A 553 -1.080 97.565 98.528 1.00 52.32 N
ATOM 17 C5 A A 553 0.280 97.830 98.412 1.00 52.71 C
ATOM 18 C6 A A 553 1.090 98.890 98.885 1.00 52.21 C
ATOM 19 N6 A A 553 0.631 99.914 99.599 1.00 52.68 N
ATOM 20 N1 A A 553 2.404 98.855 98.594 1.00 51.71 N
ATOM 21 C2 A A 553 2.870 97.824 97.878 1.00 52.83 C
ATOM 22 N3 A A 553 2.216 96.773 97.379 1.00 52.13 N
ATOM 23 C4 A A 553 0.909 96.836 97.685 1.00 52.13 C
ATOM 24 P A A 554 -0.888 90.944 99.386 1.00 55.93 P
ATOM 25 OP1 A A 554 -1.068 89.462 99.325 1.00 54.95 O
ATOM 26 OP2 A A 554 -1.868 91.781 100.130 1.00 54.39 O
ATOM 27 O5' A A 554 0.539 91.244 100.028 1.00 53.74 O
TER

ATOM 1 O3' C B1222 7.705 89.090 97.727 1.00 42.00 O
ATOM 2 P U B1223 7.369 89.292 96.182 1.00 41.61 P
ATOM 3 OP1 U B1223 6.503 88.172 95.752 1.00 42.61 O
ATOM 4 OP2 U B1223 8.656 89.511 95.498 1.00 41.74 O
ATOM 5 O5' U B1223 6.556 90.662 96.166 1.00 38.53 O
ATOM 6 C5' U B1223 5.235 90.727 96.718 1.00 39.89 C
ATOM 7 C4' U B1223 4.719 92.145 96.709 1.00 41.05 C
ATOM 8 O4' U B1223 5.571 92.985 97.527 1.00 43.26 O
ATOM 9 C3' U B1223 4.709 92.869 95.377 1.00 40.61 C
ATOM 10 O3' U B1223 3.608 92.519 94.573 1.00 43.12 O
ATOM 11 C2' U B1223 4.612 94.314 95.816 1.00 40.40 C
ATOM 12 O2' U B1223 3.315 94.648 96.237 1.00 38.01 O
ATOM 13 C1' U B1223 5.549 94.311 97.019 1.00 43.31 C
ATOM 14 N1 U B1223 6.909 94.700 96.614 1.00 46.63 N
ATOM 15 C2 U B1223 7.199 96.054 96.602 1.00 47.26 C
ATOM 16 O2 U B1223 6.388 96.905 96.922 1.00 46.44 O
ATOM 17 N3 U B1223 8.469 96.373 96.194 1.00 47.41 N
ATOM 18 C4 U B1223 9.456 95.502 95.801 1.00 47.59 C
ATOM 19 O4 U B1223 10.535 95.954 95.424 1.00 48.75 O
ATOM 20 C5 U B1223 9.090 94.116 95.846 1.00 47.09 C
ATOM 21 C6 U B1223 7.862 93.770 96.243 1.00 46.43 C
ATOM 22 P G B1224 3.700 92.712 92.983 1.00 45.22 P
ATOM 23 OP1 G B1224 2.824 91.670 92.386 1.00 44.37 O
ATOM 24 OP2 G B1224 5.134 92.774 92.596 1.00 46.24 O
ATOM 25 O5' G B1224 3.068 94.151 92.726 1.00 43.47 O
TER

Atoms:
OP1: (-5.570,92.406,97.763)
OP2: (-5.276,94.512,99.205)
C3': (-0.859,92.857,97.591)
C1': (0.090,94.731,96.529)
C5': (-3.087,93.089,96.369)
O4': (-1.145,94.445,95.899)
C8: (-1.238,96.435,97.880)
O2': (1.290,92.644,96.510)
C6: (1.090,98.890,98.885)
C5: (0.280,97.830,98.412)
C4: (0.909,96.836,97.685)
P: (-5.090,93.802,97.909)
C4': (-1.585,93.123,96.287)
C2': (0.495,93.486,97.323)
C2: (2.870,97.824,97.878)
N1: (2.404,98.855,98.594)
N3: (2.216,96.773,97.379)
N6: (0.631,99.914,99.599)
N7: (-1.080,97.565,98.528)
N9: (-0.078,95.942,97.336)
O5': (-3.542,93.774,97.552)
O3': (-0.769,91.466,97.867)
C4: (9.456,95.502,95.801)
N3: (8.469,96.373,96.194)
OP1: (6.503,88.172,95.752)
OP2: (8.656,89.511,95.498)
C2: (7.199,96.054,96.602)
C1': (5.549,94.311,97.019)
C3': (4.709,92.869,95.377)
O5': (6.556,90.662,96.166)
O4': (5.571,92.985,97.527)
C5': (5.235,90.727,96.718)
P: (7.369,89.292,96.182)
C4': (4.719,92.145,96.709)
C2': (4.612,94.314,95.816)
O2': (3.315,94.648,96.237)
N1: (6.909,94.700,96.614)
O4: (10.535,95.954,95.424)
O2: (6.388,96.905,96.922)
C6: (7.862,93.770,96.243)
C5: (9.090,94.116,95.846)
O3': (3.608,92.519,94.573)
Image (generated by PyMOL):
PyMOL image
show in jmol