ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ8:0553:01223

Extra

PDB:
ATOM 1 O3' G A 552 -5.919 93.501 97.207 1.00 46.41 O
ATOM 2 P A A 553 -5.404 92.592 98.432 1.00 48.25 P
ATOM 3 OP1 A A 553 -5.962 91.230 98.235 1.00 45.85 O
ATOM 4 OP2 A A 553 -5.602 93.294 99.729 1.00 43.95 O
ATOM 5 O5' A A 553 -3.839 92.473 98.142 1.00 48.44 O
ATOM 6 C5' A A 553 -3.372 91.763 96.967 1.00 46.78 C
ATOM 7 C4' A A 553 -1.879 91.926 96.796 1.00 44.65 C
ATOM 8 O4' A A 553 -1.551 93.280 96.390 1.00 45.41 O
ATOM 9 C3' A A 553 -1.042 91.727 98.044 1.00 44.10 C
ATOM 10 O3' A A 553 -0.880 90.345 98.335 1.00 43.42 O
ATOM 11 C2' A A 553 0.263 92.412 97.661 1.00 41.42 C
ATOM 12 O2' A A 553 1.035 91.600 96.799 1.00 41.02 O
ATOM 13 C1' A A 553 -0.253 93.611 96.862 1.00 40.92 C
ATOM 14 N9 A A 553 -0.333 94.869 97.605 1.00 40.13 N
ATOM 15 C8 A A 553 -1.445 95.475 98.125 1.00 38.69 C
ATOM 16 N7 A A 553 -1.198 96.627 98.706 1.00 40.04 N
ATOM 17 C5 A A 553 0.173 96.788 98.564 1.00 38.31 C
ATOM 18 C6 A A 553 1.056 97.815 98.956 1.00 37.73 C
ATOM 19 N6 A A 553 0.675 98.923 99.593 1.00 38.84 N
ATOM 20 N1 A A 553 2.362 97.666 98.664 1.00 38.08 N
ATOM 21 C2 A A 553 2.751 96.559 98.019 1.00 39.46 C
ATOM 22 N3 A A 553 2.020 95.529 97.592 1.00 40.50 N
ATOM 23 C4 A A 553 0.722 95.707 97.899 1.00 39.77 C
ATOM 24 P A A 554 -0.944 89.850 99.862 1.00 42.20 P
ATOM 25 OP1 A A 554 -1.168 88.370 99.835 1.00 38.87 O
ATOM 26 OP2 A A 554 -1.876 90.738 100.622 1.00 39.30 O
ATOM 27 O5' A A 554 0.515 90.148 100.428 1.00 42.00 O
TER

ATOM 1 O3' C B1222 7.679 87.949 97.814 1.00 42.60 O
ATOM 2 P U B1223 7.347 88.151 96.256 1.00 42.85 P
ATOM 3 OP1 U B1223 6.503 87.008 95.811 1.00 41.95 O
ATOM 4 OP2 U B1223 8.625 88.435 95.539 1.00 43.11 O
ATOM 5 O5' U B1223 6.462 89.472 96.265 1.00 41.35 O
ATOM 6 C5' U B1223 5.175 89.467 96.897 1.00 40.70 C
ATOM 7 C4' U B1223 4.567 90.845 96.878 1.00 40.56 C
ATOM 8 O4' U B1223 5.360 91.742 97.696 1.00 41.52 O
ATOM 9 C3' U B1223 4.510 91.546 95.535 1.00 40.11 C
ATOM 10 O3' U B1223 3.429 91.072 94.744 1.00 44.80 O
ATOM 11 C2' U B1223 4.340 92.999 95.957 1.00 39.75 C
ATOM 12 O2' U B1223 3.034 93.307 96.384 1.00 36.36 O
ATOM 13 C1' U B1223 5.268 93.064 97.172 1.00 39.90 C
ATOM 14 N1 U B1223 6.616 93.547 96.812 1.00 37.83 N
ATOM 15 C2 U B1223 6.802 94.916 96.783 1.00 37.45 C
ATOM 16 O2 U B1223 5.934 95.705 97.105 1.00 36.77 O
ATOM 17 N3 U B1223 8.045 95.327 96.370 1.00 36.79 N
ATOM 18 C4 U B1223 9.108 94.528 96.011 1.00 37.27 C
ATOM 19 O4 U B1223 10.167 95.057 95.652 1.00 37.84 O
ATOM 20 C5 U B1223 8.853 93.119 96.101 1.00 35.18 C
ATOM 21 C6 U B1223 7.648 92.687 96.489 1.00 33.94 C
ATOM 22 P G B1224 3.477 91.241 93.143 1.00 45.25 P
ATOM 23 OP1 G B1224 2.434 90.345 92.580 1.00 43.86 O
ATOM 24 OP2 G B1224 4.886 91.091 92.692 1.00 46.44 O
ATOM 25 O5' G B1224 3.009 92.751 92.921 1.00 43.05 O
TER

Atoms:
OP1: (-5.962,91.230,98.235)
OP2: (-5.602,93.294,99.729)
C3': (-1.042,91.727,98.044)
C1': (-0.253,93.611,96.862)
C5': (-3.372,91.763,96.967)
O4': (-1.551,93.280,96.390)
C8: (-1.445,95.475,98.125)
O2': (1.035,91.600,96.799)
C6: (1.056,97.815,98.956)
C5: (0.173,96.788,98.564)
C4: (0.722,95.707,97.899)
P: (-5.404,92.592,98.432)
C4': (-1.879,91.926,96.796)
C2': (0.263,92.412,97.661)
C2: (2.751,96.559,98.019)
N1: (2.362,97.666,98.664)
N3: (2.020,95.529,97.592)
N6: (0.675,98.923,99.593)
N7: (-1.198,96.627,98.706)
N9: (-0.333,94.869,97.605)
O5': (-3.839,92.473,98.142)
O3': (-0.880,90.345,98.335)
C4: (9.108,94.528,96.011)
N3: (8.045,95.327,96.370)
OP1: (6.503,87.008,95.811)
OP2: (8.625,88.435,95.539)
C2: (6.802,94.916,96.783)
C1': (5.268,93.064,97.172)
C3': (4.510,91.546,95.535)
O5': (6.462,89.472,96.265)
O4': (5.360,91.742,97.696)
C5': (5.175,89.467,96.897)
P: (7.347,88.151,96.256)
C4': (4.567,90.845,96.878)
C2': (4.340,92.999,95.957)
O2': (3.034,93.307,96.384)
N1: (6.616,93.547,96.812)
O4: (10.167,95.057,95.652)
O2: (5.934,95.705,97.105)
C6: (7.648,92.687,96.489)
C5: (8.853,93.119,96.101)
O3': (3.429,91.072,94.744)
Image (generated by PyMOL):
PyMOL image
show in jmol