Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01016:02333
Extra
PDB:
ATOM 1 O3' U A1015 62.570 91.856 115.731 1.00 42.15 O
ATOM 2 P A A1016 61.644 91.588 114.448 1.00 42.15 P
ATOM 3 OP1 A A1016 60.685 90.513 114.803 1.00 42.76 O
ATOM 4 OP2 A A1016 62.551 91.404 113.294 1.00 40.43 O
ATOM 5 O5' A A1016 60.822 92.942 114.248 1.00 40.93 O
ATOM 6 C5' A A1016 59.888 93.393 115.251 1.00 41.32 C
ATOM 7 C4' A A1016 59.648 94.883 115.123 1.00 41.55 C
ATOM 8 O4' A A1016 60.929 95.558 115.084 1.00 41.54 O
ATOM 9 C3' A A1016 58.913 95.343 113.873 1.00 41.04 C
ATOM 10 O3' A A1016 57.508 95.325 114.142 1.00 41.72 O
ATOM 11 C2' A A1016 59.426 96.767 113.697 1.00 40.63 C
ATOM 12 O2' A A1016 58.778 97.664 114.569 1.00 40.94 O
ATOM 13 C1' A A1016 60.874 96.638 114.177 1.00 40.04 C
ATOM 14 N9 A A1016 61.895 96.414 113.150 1.00 36.99 N
ATOM 15 C8 A A1016 62.403 95.216 112.704 1.00 34.92 C
ATOM 16 N7 A A1016 63.360 95.345 111.821 1.00 32.18 N
ATOM 17 C5 A A1016 63.489 96.719 111.668 1.00 33.18 C
ATOM 18 C6 A A1016 64.354 97.510 110.883 1.00 32.95 C
ATOM 19 N6 A A1016 65.308 97.009 110.094 1.00 32.95 N
ATOM 20 N1 A A1016 64.208 98.850 110.946 1.00 31.07 N
ATOM 21 C2 A A1016 63.265 99.352 111.753 1.00 33.33 C
ATOM 22 N3 A A1016 62.404 98.715 112.550 1.00 32.89 N
ATOM 23 C4 A A1016 62.574 97.387 112.461 1.00 33.88 C
ATOM 24 P A A1017 56.452 95.022 112.964 1.00 42.92 P
ATOM 25 OP1 A A1017 55.115 94.896 113.596 1.00 43.84 O
ATOM 26 OP2 A A1017 56.957 93.920 112.111 1.00 42.60 O
ATOM 27 O5' A A1017 56.445 96.361 112.106 1.00 43.60 O
TER
ATOM 1 O3' G B2332 54.748 103.784 113.476 1.00 40.29 O
ATOM 2 P U B2333 55.292 103.777 114.990 1.00 40.24 P
ATOM 3 OP1 U B2333 54.248 103.102 115.800 1.00 38.53 O
ATOM 4 OP2 U B2333 55.727 105.148 115.356 1.00 39.50 O
ATOM 5 O5' U B2333 56.598 102.864 114.919 1.00 37.98 O
ATOM 6 C5' U B2333 56.550 101.548 114.343 1.00 36.36 C
ATOM 7 C4' U B2333 57.947 101.022 114.122 1.00 38.68 C
ATOM 8 O4' U B2333 58.632 101.836 113.135 1.00 38.50 O
ATOM 9 C3' U B2333 58.867 101.037 115.331 1.00 37.78 C
ATOM 10 O3' U B2333 58.636 99.874 116.124 1.00 38.45 O
ATOM 11 C2' U B2333 60.247 101.025 114.683 1.00 37.00 C
ATOM 12 O2' U B2333 60.614 99.735 114.233 1.00 38.42 O
ATOM 13 C1' U B2333 60.011 101.893 113.444 1.00 36.30 C
ATOM 14 N1 U B2333 60.400 103.305 113.568 1.00 36.08 N
ATOM 15 C2 U B2333 61.738 103.641 113.342 1.00 37.20 C
ATOM 16 O2 U B2333 62.618 102.812 113.135 1.00 36.04 O
ATOM 17 N3 U B2333 62.009 104.986 113.388 1.00 35.24 N
ATOM 18 C4 U B2333 61.118 106.002 113.658 1.00 35.20 C
ATOM 19 O4 U B2333 61.503 107.165 113.598 1.00 35.80 O
ATOM 20 C5 U B2333 59.775 105.573 113.928 1.00 35.57 C
ATOM 21 C6 U B2333 59.470 104.275 113.873 1.00 34.57 C
ATOM 22 P C B2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 23 OP1 C B2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 24 OP2 C B2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 25 O5' C B2334 60.068 100.200 118.172 1.00 40.18 O
TER
ATOM 2 P A A1016 61.644 91.588 114.448 1.00 42.15 P
ATOM 3 OP1 A A1016 60.685 90.513 114.803 1.00 42.76 O
ATOM 4 OP2 A A1016 62.551 91.404 113.294 1.00 40.43 O
ATOM 5 O5' A A1016 60.822 92.942 114.248 1.00 40.93 O
ATOM 6 C5' A A1016 59.888 93.393 115.251 1.00 41.32 C
ATOM 7 C4' A A1016 59.648 94.883 115.123 1.00 41.55 C
ATOM 8 O4' A A1016 60.929 95.558 115.084 1.00 41.54 O
ATOM 9 C3' A A1016 58.913 95.343 113.873 1.00 41.04 C
ATOM 10 O3' A A1016 57.508 95.325 114.142 1.00 41.72 O
ATOM 11 C2' A A1016 59.426 96.767 113.697 1.00 40.63 C
ATOM 12 O2' A A1016 58.778 97.664 114.569 1.00 40.94 O
ATOM 13 C1' A A1016 60.874 96.638 114.177 1.00 40.04 C
ATOM 14 N9 A A1016 61.895 96.414 113.150 1.00 36.99 N
ATOM 15 C8 A A1016 62.403 95.216 112.704 1.00 34.92 C
ATOM 16 N7 A A1016 63.360 95.345 111.821 1.00 32.18 N
ATOM 17 C5 A A1016 63.489 96.719 111.668 1.00 33.18 C
ATOM 18 C6 A A1016 64.354 97.510 110.883 1.00 32.95 C
ATOM 19 N6 A A1016 65.308 97.009 110.094 1.00 32.95 N
ATOM 20 N1 A A1016 64.208 98.850 110.946 1.00 31.07 N
ATOM 21 C2 A A1016 63.265 99.352 111.753 1.00 33.33 C
ATOM 22 N3 A A1016 62.404 98.715 112.550 1.00 32.89 N
ATOM 23 C4 A A1016 62.574 97.387 112.461 1.00 33.88 C
ATOM 24 P A A1017 56.452 95.022 112.964 1.00 42.92 P
ATOM 25 OP1 A A1017 55.115 94.896 113.596 1.00 43.84 O
ATOM 26 OP2 A A1017 56.957 93.920 112.111 1.00 42.60 O
ATOM 27 O5' A A1017 56.445 96.361 112.106 1.00 43.60 O
TER
ATOM 1 O3' G B2332 54.748 103.784 113.476 1.00 40.29 O
ATOM 2 P U B2333 55.292 103.777 114.990 1.00 40.24 P
ATOM 3 OP1 U B2333 54.248 103.102 115.800 1.00 38.53 O
ATOM 4 OP2 U B2333 55.727 105.148 115.356 1.00 39.50 O
ATOM 5 O5' U B2333 56.598 102.864 114.919 1.00 37.98 O
ATOM 6 C5' U B2333 56.550 101.548 114.343 1.00 36.36 C
ATOM 7 C4' U B2333 57.947 101.022 114.122 1.00 38.68 C
ATOM 8 O4' U B2333 58.632 101.836 113.135 1.00 38.50 O
ATOM 9 C3' U B2333 58.867 101.037 115.331 1.00 37.78 C
ATOM 10 O3' U B2333 58.636 99.874 116.124 1.00 38.45 O
ATOM 11 C2' U B2333 60.247 101.025 114.683 1.00 37.00 C
ATOM 12 O2' U B2333 60.614 99.735 114.233 1.00 38.42 O
ATOM 13 C1' U B2333 60.011 101.893 113.444 1.00 36.30 C
ATOM 14 N1 U B2333 60.400 103.305 113.568 1.00 36.08 N
ATOM 15 C2 U B2333 61.738 103.641 113.342 1.00 37.20 C
ATOM 16 O2 U B2333 62.618 102.812 113.135 1.00 36.04 O
ATOM 17 N3 U B2333 62.009 104.986 113.388 1.00 35.24 N
ATOM 18 C4 U B2333 61.118 106.002 113.658 1.00 35.20 C
ATOM 19 O4 U B2333 61.503 107.165 113.598 1.00 35.80 O
ATOM 20 C5 U B2333 59.775 105.573 113.928 1.00 35.57 C
ATOM 21 C6 U B2333 59.470 104.275 113.873 1.00 34.57 C
ATOM 22 P C B2334 58.555 99.990 117.727 1.00 40.08 P
ATOM 23 OP1 C B2334 58.110 98.660 118.222 1.00 37.35 O
ATOM 24 OP2 C B2334 57.788 101.210 118.093 1.00 36.65 O
ATOM 25 O5' C B2334 60.068 100.200 118.172 1.00 40.18 O
TER
Atoms:
OP1: (60.685,90.513,114.803)
OP2: (62.551,91.404,113.294)
C3': (58.913,95.343,113.873)
C1': (60.874,96.638,114.177)
C5': (59.888,93.393,115.251)
O4': (60.929,95.558,115.084)
C8: (62.403,95.216,112.704)
O2': (58.778,97.664,114.569)
C6: (64.354,97.510,110.883)
C5: (63.489,96.719,111.668)
C4: (62.574,97.387,112.461)
P: (61.644,91.588,114.448)
C4': (59.648,94.883,115.123)
C2': (59.426,96.767,113.697)
C2: (63.265,99.352,111.753)
N1: (64.208,98.850,110.946)
N3: (62.404,98.715,112.550)
N6: (65.308,97.009,110.094)
N7: (63.360,95.345,111.821)
N9: (61.895,96.414,113.150)
O5': (60.822,92.942,114.248)
O3': (57.508,95.325,114.142)
OP2: (62.551,91.404,113.294)
C3': (58.913,95.343,113.873)
C1': (60.874,96.638,114.177)
C5': (59.888,93.393,115.251)
O4': (60.929,95.558,115.084)
C8: (62.403,95.216,112.704)
O2': (58.778,97.664,114.569)
C6: (64.354,97.510,110.883)
C5: (63.489,96.719,111.668)
C4: (62.574,97.387,112.461)
P: (61.644,91.588,114.448)
C4': (59.648,94.883,115.123)
C2': (59.426,96.767,113.697)
C2: (63.265,99.352,111.753)
N1: (64.208,98.850,110.946)
N3: (62.404,98.715,112.550)
N6: (65.308,97.009,110.094)
N7: (63.360,95.345,111.821)
N9: (61.895,96.414,113.150)
O5': (60.822,92.942,114.248)
O3': (57.508,95.325,114.142)
C4: (61.118,106.002,113.658)
N3: (62.009,104.986,113.388)
OP1: (54.248,103.102,115.800)
OP2: (55.727,105.148,115.356)
C2: (61.738,103.641,113.342)
C1': (60.011,101.893,113.444)
C3': (58.867,101.037,115.331)
O5': (56.598,102.864,114.919)
O4': (58.632,101.836,113.135)
C5': (56.550,101.548,114.343)
P: (55.292,103.777,114.990)
C4': (57.947,101.022,114.122)
C2': (60.247,101.025,114.683)
O2': (60.614,99.735,114.233)
N1: (60.400,103.305,113.568)
O4: (61.503,107.165,113.598)
O2: (62.618,102.812,113.135)
C6: (59.470,104.275,113.873)
C5: (59.775,105.573,113.928)
O3': (58.636,99.874,116.124)
N3: (62.009,104.986,113.388)
OP1: (54.248,103.102,115.800)
OP2: (55.727,105.148,115.356)
C2: (61.738,103.641,113.342)
C1': (60.011,101.893,113.444)
C3': (58.867,101.037,115.331)
O5': (56.598,102.864,114.919)
O4': (58.632,101.836,113.135)
C5': (56.550,101.548,114.343)
P: (55.292,103.777,114.990)
C4': (57.947,101.022,114.122)
C2': (60.247,101.025,114.683)
O2': (60.614,99.735,114.233)
N1: (60.400,103.305,113.568)
O4: (61.503,107.165,113.598)
O2: (62.618,102.812,113.135)
C6: (59.470,104.275,113.873)
C5: (59.775,105.573,113.928)
O3': (58.636,99.874,116.124)
Image (generated by PyMOL):