ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1JJ2:0553:01223

Extra

PDB:
ATOM 1 O3' G A 552 -5.785 94.206 96.653 1.00 47.23 O
ATOM 2 P A A 553 -5.313 93.226 97.839 1.00 49.23 P
ATOM 3 OP1 A A 553 -5.930 91.897 97.596 1.00 44.88 O
ATOM 4 OP2 A A 553 -5.489 93.894 99.158 1.00 43.98 O
ATOM 5 O5' A A 553 -3.754 93.056 97.550 1.00 47.59 O
ATOM 6 C5' A A 553 -3.302 92.391 96.348 1.00 44.06 C
ATOM 7 C4' A A 553 -1.797 92.452 96.235 1.00 42.19 C
ATOM 8 O4' A A 553 -1.367 93.767 95.802 1.00 42.20 O
ATOM 9 C3' A A 553 -1.022 92.207 97.515 1.00 40.19 C
ATOM 10 O3' A A 553 -0.921 90.813 97.771 1.00 41.55 O
ATOM 11 C2' A A 553 0.323 92.846 97.195 1.00 38.93 C
ATOM 12 O2' A A 553 1.117 92.018 96.368 1.00 39.14 O
ATOM 13 C1' A A 553 -0.108 94.066 96.378 1.00 37.76 C
ATOM 14 N9 A A 553 -0.238 95.308 97.137 1.00 36.69 N
ATOM 15 C8 A A 553 -1.392 95.884 97.606 1.00 37.32 C
ATOM 16 N7 A A 553 -1.201 97.023 98.227 1.00 38.12 N
ATOM 17 C5 A A 553 0.172 97.208 98.172 1.00 36.86 C
ATOM 18 C6 A A 553 1.012 98.237 98.652 1.00 38.07 C
ATOM 19 N6 A A 553 0.576 99.318 99.307 1.00 37.19 N
ATOM 20 N1 A A 553 2.337 98.114 98.433 1.00 38.70 N
ATOM 21 C2 A A 553 2.781 97.033 97.776 1.00 38.72 C
ATOM 22 N3 A A 553 2.096 96.007 97.276 1.00 38.83 N
ATOM 23 C4 A A 553 0.779 96.156 97.511 1.00 38.05 C
ATOM 24 P A A 554 -0.995 90.268 99.282 1.00 41.80 P
ATOM 25 OP1 A A 554 -1.099 88.780 99.198 1.00 40.32 O
ATOM 26 OP2 A A 554 -2.024 91.046 100.011 1.00 41.56 O
ATOM 27 O5' A A 554 0.416 90.645 99.922 1.00 42.02 O
TER

ATOM 1 O3' C B1222 7.568 88.466 97.616 1.00 35.17 O
ATOM 2 P U B1223 7.255 88.656 96.057 1.00 35.71 P
ATOM 3 OP1 U B1223 6.443 87.501 95.596 1.00 34.65 O
ATOM 4 OP2 U B1223 8.542 88.952 95.383 1.00 35.44 O
ATOM 5 O5' U B1223 6.374 89.982 96.022 1.00 32.92 O
ATOM 6 C5' U B1223 5.058 89.999 96.585 1.00 32.60 C
ATOM 7 C4' U B1223 4.489 91.397 96.564 1.00 33.82 C
ATOM 8 O4' U B1223 5.274 92.267 97.421 1.00 34.97 O
ATOM 9 C3' U B1223 4.496 92.119 95.230 1.00 33.48 C
ATOM 10 O3' U B1223 3.434 91.703 94.390 1.00 37.29 O
ATOM 11 C2' U B1223 4.344 93.565 95.666 1.00 34.86 C
ATOM 12 O2' U B1223 3.020 93.887 96.023 1.00 34.78 O
ATOM 13 C1' U B1223 5.232 93.593 96.913 1.00 34.04 C
ATOM 14 N1 U B1223 6.599 94.015 96.571 1.00 34.24 N
ATOM 15 C2 U B1223 6.858 95.377 96.520 1.00 34.86 C
ATOM 16 O2 U B1223 6.026 96.226 96.805 1.00 32.94 O
ATOM 17 N3 U B1223 8.132 95.707 96.123 1.00 35.09 N
ATOM 18 C4 U B1223 9.149 94.836 95.792 1.00 34.12 C
ATOM 19 O4 U B1223 10.222 95.285 95.396 1.00 34.61 O
ATOM 20 C5 U B1223 8.812 93.450 95.906 1.00 32.46 C
ATOM 21 C6 U B1223 7.586 93.096 96.283 1.00 31.74 C
ATOM 22 P G B1224 3.534 91.924 92.800 1.00 38.69 P
ATOM 23 OP1 G B1224 2.600 90.941 92.191 1.00 39.15 O
ATOM 24 OP2 G B1224 4.959 91.923 92.390 1.00 40.52 O
ATOM 25 O5' G B1224 2.950 93.388 92.577 1.00 36.21 O
TER

Atoms:
OP1: (-5.930,91.897,97.596)
OP2: (-5.489,93.894,99.158)
C3': (-1.022,92.207,97.515)
C1': (-0.108,94.066,96.378)
C5': (-3.302,92.391,96.348)
O4': (-1.367,93.767,95.802)
C8: (-1.392,95.884,97.606)
O2': (1.117,92.018,96.368)
C6: (1.012,98.237,98.652)
C5: (0.172,97.208,98.172)
C4: (0.779,96.156,97.511)
P: (-5.313,93.226,97.839)
C4': (-1.797,92.452,96.235)
C2': (0.323,92.846,97.195)
C2: (2.781,97.033,97.776)
N1: (2.337,98.114,98.433)
N3: (2.096,96.007,97.276)
N6: (0.576,99.318,99.307)
N7: (-1.201,97.023,98.227)
N9: (-0.238,95.308,97.137)
O5': (-3.754,93.056,97.550)
O3': (-0.921,90.813,97.771)
C4: (9.149,94.836,95.792)
N3: (8.132,95.707,96.123)
OP1: (6.443,87.501,95.596)
OP2: (8.542,88.952,95.383)
C2: (6.858,95.377,96.520)
C1': (5.232,93.593,96.913)
C3': (4.496,92.119,95.230)
O5': (6.374,89.982,96.022)
O4': (5.274,92.267,97.421)
C5': (5.058,89.999,96.585)
P: (7.255,88.656,96.057)
C4': (4.489,91.397,96.564)
C2': (4.344,93.565,95.666)
O2': (3.020,93.887,96.023)
N1: (6.599,94.015,96.571)
O4: (10.222,95.285,95.396)
O2: (6.026,96.226,96.805)
C6: (7.586,93.096,96.283)
C5: (8.812,93.450,95.906)
O3': (3.434,91.703,94.390)
Image (generated by PyMOL):
PyMOL image
show in jmol