Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1904:A1905
Extra
PDB:
ATOM 1 O3' G A1903 -107.485 -4.285 -5.485 1.00 37.28 O
ATOM 2 P U A1904 -106.908 -4.492 -6.962 1.00 41.32 P
ATOM 3 OP1 U A1904 -108.063 -4.501 -7.885 1.00 41.32 O
ATOM 4 OP2 U A1904 -106.012 -5.673 -6.925 1.00 41.32 O
ATOM 5 O5' U A1904 -106.063 -3.167 -7.165 1.00 41.32 O
ATOM 6 C5' U A1904 -106.529 -1.944 -6.624 1.00 41.32 C
ATOM 7 C4' U A1904 -105.443 -0.914 -6.584 1.00 41.32 C
ATOM 8 O4' U A1904 -104.510 -1.221 -5.528 1.00 41.32 O
ATOM 9 C3' U A1904 -104.583 -0.831 -7.818 1.00 41.32 C
ATOM 10 O3' U A1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 11 C2' U A1904 -103.318 -0.180 -7.298 1.00 41.32 C
ATOM 12 O2' U A1904 -103.486 1.227 -7.187 1.00 41.32 O
ATOM 13 C1' U A1904 -103.224 -0.772 -5.890 1.00 41.32 C
ATOM 14 N1 U A1904 -102.268 -1.909 -5.807 1.00 41.23 N
ATOM 15 C2 U A1904 -100.939 -1.553 -5.624 1.00 41.23 C
ATOM 16 O2 U A1904 -100.552 -0.397 -5.566 1.00 41.23 O
ATOM 17 N3 U A1904 -100.067 -2.604 -5.536 1.00 41.23 N
ATOM 18 C4 U A1904 -100.378 -3.941 -5.600 1.00 41.23 C
ATOM 19 O4 U A1904 -99.450 -4.734 -5.501 1.00 41.23 O
ATOM 20 C5 U A1904 -101.768 -4.251 -5.775 1.00 41.23 C
ATOM 21 C6 U A1904 -102.648 -3.242 -5.867 1.00 41.23 C
ATOM 22 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 23 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 24 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 25 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
TER
ATOM 1 O3' U B1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 2 P A B1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 3 OP1 A B1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 4 OP2 A B1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 5 O5' A B1905 -103.508 0.089 -10.651 1.00 28.49 O
ATOM 6 C5' A B1905 -103.253 1.459 -10.428 1.00 28.49 C
ATOM 7 C4' A B1905 -102.201 1.975 -11.359 1.00 28.49 C
ATOM 8 O4' A B1905 -100.904 1.750 -10.791 1.00 28.49 O
ATOM 9 C3' A B1905 -102.121 1.313 -12.720 1.00 28.49 C
ATOM 10 O3' A B1905 -103.097 1.813 -13.629 1.00 28.49 O
ATOM 11 C2' A B1905 -100.675 1.588 -13.151 1.00 28.49 C
ATOM 12 O2' A B1905 -100.578 2.803 -13.874 1.00 28.49 O
ATOM 13 C1' A B1905 -99.950 1.760 -11.812 1.00 28.49 C
ATOM 14 N9 A B1905 -98.962 0.708 -11.550 1.00 27.91 N
ATOM 15 C8 A B1905 -98.969 -0.642 -11.765 1.00 27.91 C
ATOM 16 N7 A B1905 -97.855 -1.213 -11.374 1.00 27.91 N
ATOM 17 C5 A B1905 -97.081 -0.176 -10.869 1.00 27.91 C
ATOM 18 C6 A B1905 -95.802 -0.104 -10.297 1.00 27.91 C
ATOM 19 N6 A B1905 -94.984 -1.143 -10.104 1.00 27.91 N
ATOM 20 N1 A B1905 -95.362 1.109 -9.925 1.00 27.91 N
ATOM 21 C2 A B1905 -96.144 2.168 -10.106 1.00 27.91 C
ATOM 22 N3 A B1905 -97.354 2.223 -10.628 1.00 27.91 N
ATOM 23 C4 A B1905 -97.760 1.006 -10.986 1.00 27.91 C
ATOM 24 P A B1906 -103.317 1.105 -15.057 1.00 66.34 P
ATOM 25 OP1 A B1906 -104.778 0.948 -15.242 1.00 66.34 O
ATOM 26 OP2 A B1906 -102.463 -0.102 -15.082 1.00 66.34 O
ATOM 27 O5' A B1906 -102.752 2.179 -16.079 1.00 66.34 O
TER
ATOM 2 P U A1904 -106.908 -4.492 -6.962 1.00 41.32 P
ATOM 3 OP1 U A1904 -108.063 -4.501 -7.885 1.00 41.32 O
ATOM 4 OP2 U A1904 -106.012 -5.673 -6.925 1.00 41.32 O
ATOM 5 O5' U A1904 -106.063 -3.167 -7.165 1.00 41.32 O
ATOM 6 C5' U A1904 -106.529 -1.944 -6.624 1.00 41.32 C
ATOM 7 C4' U A1904 -105.443 -0.914 -6.584 1.00 41.32 C
ATOM 8 O4' U A1904 -104.510 -1.221 -5.528 1.00 41.32 O
ATOM 9 C3' U A1904 -104.583 -0.831 -7.818 1.00 41.32 C
ATOM 10 O3' U A1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 11 C2' U A1904 -103.318 -0.180 -7.298 1.00 41.32 C
ATOM 12 O2' U A1904 -103.486 1.227 -7.187 1.00 41.32 O
ATOM 13 C1' U A1904 -103.224 -0.772 -5.890 1.00 41.32 C
ATOM 14 N1 U A1904 -102.268 -1.909 -5.807 1.00 41.23 N
ATOM 15 C2 U A1904 -100.939 -1.553 -5.624 1.00 41.23 C
ATOM 16 O2 U A1904 -100.552 -0.397 -5.566 1.00 41.23 O
ATOM 17 N3 U A1904 -100.067 -2.604 -5.536 1.00 41.23 N
ATOM 18 C4 U A1904 -100.378 -3.941 -5.600 1.00 41.23 C
ATOM 19 O4 U A1904 -99.450 -4.734 -5.501 1.00 41.23 O
ATOM 20 C5 U A1904 -101.768 -4.251 -5.775 1.00 41.23 C
ATOM 21 C6 U A1904 -102.648 -3.242 -5.867 1.00 41.23 C
ATOM 22 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 23 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 24 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 25 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
TER
ATOM 1 O3' U B1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 2 P A B1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 3 OP1 A B1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 4 OP2 A B1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 5 O5' A B1905 -103.508 0.089 -10.651 1.00 28.49 O
ATOM 6 C5' A B1905 -103.253 1.459 -10.428 1.00 28.49 C
ATOM 7 C4' A B1905 -102.201 1.975 -11.359 1.00 28.49 C
ATOM 8 O4' A B1905 -100.904 1.750 -10.791 1.00 28.49 O
ATOM 9 C3' A B1905 -102.121 1.313 -12.720 1.00 28.49 C
ATOM 10 O3' A B1905 -103.097 1.813 -13.629 1.00 28.49 O
ATOM 11 C2' A B1905 -100.675 1.588 -13.151 1.00 28.49 C
ATOM 12 O2' A B1905 -100.578 2.803 -13.874 1.00 28.49 O
ATOM 13 C1' A B1905 -99.950 1.760 -11.812 1.00 28.49 C
ATOM 14 N9 A B1905 -98.962 0.708 -11.550 1.00 27.91 N
ATOM 15 C8 A B1905 -98.969 -0.642 -11.765 1.00 27.91 C
ATOM 16 N7 A B1905 -97.855 -1.213 -11.374 1.00 27.91 N
ATOM 17 C5 A B1905 -97.081 -0.176 -10.869 1.00 27.91 C
ATOM 18 C6 A B1905 -95.802 -0.104 -10.297 1.00 27.91 C
ATOM 19 N6 A B1905 -94.984 -1.143 -10.104 1.00 27.91 N
ATOM 20 N1 A B1905 -95.362 1.109 -9.925 1.00 27.91 N
ATOM 21 C2 A B1905 -96.144 2.168 -10.106 1.00 27.91 C
ATOM 22 N3 A B1905 -97.354 2.223 -10.628 1.00 27.91 N
ATOM 23 C4 A B1905 -97.760 1.006 -10.986 1.00 27.91 C
ATOM 24 P A B1906 -103.317 1.105 -15.057 1.00 66.34 P
ATOM 25 OP1 A B1906 -104.778 0.948 -15.242 1.00 66.34 O
ATOM 26 OP2 A B1906 -102.463 -0.102 -15.082 1.00 66.34 O
ATOM 27 O5' A B1906 -102.752 2.179 -16.079 1.00 66.34 O
TER
Atoms:
C4: (-100.378,-3.941,-5.600)
N3: (-100.067,-2.604,-5.536)
OP1: (-108.063,-4.501,-7.885)
OP2: (-106.012,-5.673,-6.925)
C2: (-100.939,-1.553,-5.624)
C1': (-103.224,-0.772,-5.890)
C3': (-104.583,-0.831,-7.818)
O5': (-106.063,-3.167,-7.165)
O4': (-104.510,-1.221,-5.528)
C5': (-106.529,-1.944,-6.624)
P: (-106.908,-4.492,-6.962)
C4': (-105.443,-0.914,-6.584)
C2': (-103.318,-0.180,-7.298)
O2': (-103.486,1.227,-7.187)
N1: (-102.268,-1.909,-5.807)
O4: (-99.450,-4.734,-5.501)
O2: (-100.552,-0.397,-5.566)
C6: (-102.648,-3.242,-5.867)
C5: (-101.768,-4.251,-5.775)
O3': (-105.202,-0.108,-8.848)
N3: (-100.067,-2.604,-5.536)
OP1: (-108.063,-4.501,-7.885)
OP2: (-106.012,-5.673,-6.925)
C2: (-100.939,-1.553,-5.624)
C1': (-103.224,-0.772,-5.890)
C3': (-104.583,-0.831,-7.818)
O5': (-106.063,-3.167,-7.165)
O4': (-104.510,-1.221,-5.528)
C5': (-106.529,-1.944,-6.624)
P: (-106.908,-4.492,-6.962)
C4': (-105.443,-0.914,-6.584)
C2': (-103.318,-0.180,-7.298)
O2': (-103.486,1.227,-7.187)
N1: (-102.268,-1.909,-5.807)
O4: (-99.450,-4.734,-5.501)
O2: (-100.552,-0.397,-5.566)
C6: (-102.648,-3.242,-5.867)
C5: (-101.768,-4.251,-5.775)
O3': (-105.202,-0.108,-8.848)
OP1: (-105.973,0.165,-11.203)
OP2: (-104.874,-2.011,-10.392)
C3': (-102.121,1.313,-12.720)
C1': (-99.950,1.760,-11.812)
C5': (-103.253,1.459,-10.428)
O4': (-100.904,1.750,-10.791)
C8: (-98.969,-0.642,-11.765)
O2': (-100.578,2.803,-13.874)
C6: (-95.802,-0.104,-10.297)
C5: (-97.081,-0.176,-10.869)
C4: (-97.760,1.006,-10.986)
P: (-104.946,-0.526,-10.364)
C4': (-102.201,1.975,-11.359)
C2': (-100.675,1.588,-13.151)
C2: (-96.144,2.168,-10.106)
N1: (-95.362,1.109,-9.925)
N3: (-97.354,2.223,-10.628)
N6: (-94.984,-1.143,-10.104)
N7: (-97.855,-1.213,-11.374)
N9: (-98.962,0.708,-11.550)
O5': (-103.508,0.089,-10.651)
O3': (-103.097,1.813,-13.629)
OP2: (-104.874,-2.011,-10.392)
C3': (-102.121,1.313,-12.720)
C1': (-99.950,1.760,-11.812)
C5': (-103.253,1.459,-10.428)
O4': (-100.904,1.750,-10.791)
C8: (-98.969,-0.642,-11.765)
O2': (-100.578,2.803,-13.874)
C6: (-95.802,-0.104,-10.297)
C5: (-97.081,-0.176,-10.869)
C4: (-97.760,1.006,-10.986)
P: (-104.946,-0.526,-10.364)
C4': (-102.201,1.975,-11.359)
C2': (-100.675,1.588,-13.151)
C2: (-96.144,2.168,-10.106)
N1: (-95.362,1.109,-9.925)
N3: (-97.354,2.223,-10.628)
N6: (-94.984,-1.143,-10.104)
N7: (-97.855,-1.213,-11.374)
N9: (-98.962,0.708,-11.550)
O5': (-103.508,0.089,-10.651)
O3': (-103.097,1.813,-13.629)
Image (generated by PyMOL):