Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12061:12062
Extra
PDB:
ATOM 1 O3' G A2060 -30.054 -20.905 57.499 1.00 91.63 O
ATOM 2 P U A2061 -30.496 -19.507 56.869 1.00 83.91 P
ATOM 3 OP1 U A2061 -31.126 -19.791 55.552 1.00 84.13 O
ATOM 4 OP2 U A2061 -29.307 -18.617 56.914 1.00 83.73 O
ATOM 5 O5' U A2061 -31.599 -19.009 57.905 1.00 83.88 O
ATOM 6 C5' U A2061 -32.647 -19.871 58.316 1.00 84.00 C
ATOM 7 C4' U A2061 -33.477 -19.263 59.425 1.00 83.92 C
ATOM 8 O4' U A2061 -32.725 -19.239 60.670 1.00 83.72 O
ATOM 9 C3' U A2061 -33.893 -17.816 59.249 1.00 83.88 C
ATOM 10 O3' U A2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 11 C2' U A2061 -34.240 -17.419 60.667 1.00 83.75 C
ATOM 12 O2' U A2061 -35.487 -17.976 61.038 1.00 83.87 O
ATOM 13 C1' U A2061 -33.136 -18.130 61.447 1.00 83.61 C
ATOM 14 N1 U A2061 -31.978 -17.248 61.654 1.00 83.41 N
ATOM 15 C2 U A2061 -31.957 -16.429 62.760 1.00 83.24 C
ATOM 16 O2 U A2061 -32.846 -16.445 63.580 1.00 83.25 O
ATOM 17 N3 U A2061 -30.857 -15.616 62.876 1.00 83.07 N
ATOM 18 C4 U A2061 -29.806 -15.563 61.990 1.00 83.06 C
ATOM 19 O4 U A2061 -28.878 -14.814 62.194 1.00 82.89 O
ATOM 20 C5 U A2061 -29.887 -16.424 60.860 1.00 83.24 C
ATOM 21 C6 U A2061 -30.951 -17.222 60.738 1.00 83.41 C
ATOM 22 P A A2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 23 OP1 A A2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 24 OP2 A A2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 25 O5' A A2062 -36.689 -15.871 58.291 1.00 75.88 O
TER
ATOM 1 O3' U B2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 2 P A B2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A B2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A B2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A B2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A B2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A B2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A B2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A B2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A B2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A B2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A B2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A B2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A B2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A B2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A B2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A B2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A B2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A B2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A B2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A B2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A B2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
TER
ATOM 2 P U A2061 -30.496 -19.507 56.869 1.00 83.91 P
ATOM 3 OP1 U A2061 -31.126 -19.791 55.552 1.00 84.13 O
ATOM 4 OP2 U A2061 -29.307 -18.617 56.914 1.00 83.73 O
ATOM 5 O5' U A2061 -31.599 -19.009 57.905 1.00 83.88 O
ATOM 6 C5' U A2061 -32.647 -19.871 58.316 1.00 84.00 C
ATOM 7 C4' U A2061 -33.477 -19.263 59.425 1.00 83.92 C
ATOM 8 O4' U A2061 -32.725 -19.239 60.670 1.00 83.72 O
ATOM 9 C3' U A2061 -33.893 -17.816 59.249 1.00 83.88 C
ATOM 10 O3' U A2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 11 C2' U A2061 -34.240 -17.419 60.667 1.00 83.75 C
ATOM 12 O2' U A2061 -35.487 -17.976 61.038 1.00 83.87 O
ATOM 13 C1' U A2061 -33.136 -18.130 61.447 1.00 83.61 C
ATOM 14 N1 U A2061 -31.978 -17.248 61.654 1.00 83.41 N
ATOM 15 C2 U A2061 -31.957 -16.429 62.760 1.00 83.24 C
ATOM 16 O2 U A2061 -32.846 -16.445 63.580 1.00 83.25 O
ATOM 17 N3 U A2061 -30.857 -15.616 62.876 1.00 83.07 N
ATOM 18 C4 U A2061 -29.806 -15.563 61.990 1.00 83.06 C
ATOM 19 O4 U A2061 -28.878 -14.814 62.194 1.00 82.89 O
ATOM 20 C5 U A2061 -29.887 -16.424 60.860 1.00 83.24 C
ATOM 21 C6 U A2061 -30.951 -17.222 60.738 1.00 83.41 C
ATOM 22 P A A2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 23 OP1 A A2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 24 OP2 A A2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 25 O5' A A2062 -36.689 -15.871 58.291 1.00 75.88 O
TER
ATOM 1 O3' U B2061 -34.954 -17.636 58.342 1.00 84.07 O
ATOM 2 P A B2062 -35.233 -16.178 57.763 1.00 75.81 P
ATOM 3 OP1 A B2062 -35.251 -16.263 56.283 1.00 75.97 O
ATOM 4 OP2 A B2062 -34.261 -15.285 58.409 1.00 75.59 O
ATOM 5 O5' A B2062 -36.689 -15.871 58.291 1.00 75.88 O
ATOM 6 C5' A B2062 -36.904 -15.455 59.617 1.00 75.73 C
ATOM 7 C4' A B2062 -37.980 -14.417 59.686 1.00 75.76 C
ATOM 8 O4' A B2062 -37.804 -13.637 60.882 1.00 75.57 O
ATOM 9 C3' A B2062 -38.001 -13.414 58.542 1.00 75.81 C
ATOM 10 O3' A B2062 -38.835 -13.852 57.490 1.00 76.03 O
ATOM 11 C2' A B2062 -38.512 -12.139 59.193 1.00 75.71 C
ATOM 12 O2' A B2062 -39.938 -12.132 59.223 1.00 75.85 O
ATOM 13 C1' A B2062 -38.000 -12.278 60.622 1.00 75.52 C
ATOM 14 N9 A B2062 -36.721 -11.579 60.855 1.00 75.33 N
ATOM 15 C8 A B2062 -35.677 -11.217 60.044 1.00 75.29 C
ATOM 16 N7 A B2062 -34.703 -10.621 60.703 1.00 75.08 N
ATOM 17 C5 A B2062 -35.155 -10.605 62.025 1.00 74.99 C
ATOM 18 C6 A B2062 -34.635 -10.123 63.248 1.00 74.78 C
ATOM 19 N6 A B2062 -33.457 -9.520 63.357 1.00 74.62 N
ATOM 20 N1 A B2062 -35.367 -10.271 64.381 1.00 74.75 N
ATOM 21 C2 A B2062 -36.564 -10.865 64.310 1.00 74.91 C
ATOM 22 N3 A B2062 -37.149 -11.363 63.230 1.00 75.11 N
ATOM 23 C4 A B2062 -36.390 -11.200 62.122 1.00 75.14 C
ATOM 24 P A B2063 -38.408 -13.698 55.957 1.00119.94 P
ATOM 25 OP1 A B2063 -37.948 -15.028 55.484 1.00120.04 O
ATOM 26 OP2 A B2063 -37.487 -12.556 55.858 1.00119.79 O
ATOM 27 O5' A B2063 -39.782 -13.340 55.294 1.00120.12 O
TER
Atoms:
C4: (-29.806,-15.563,61.990)
N3: (-30.857,-15.616,62.876)
OP1: (-31.126,-19.791,55.552)
OP2: (-29.307,-18.617,56.914)
C2: (-31.957,-16.429,62.760)
C1': (-33.136,-18.130,61.447)
C3': (-33.893,-17.816,59.249)
O5': (-31.599,-19.009,57.905)
O4': (-32.725,-19.239,60.670)
C5': (-32.647,-19.871,58.316)
P: (-30.496,-19.507,56.869)
C4': (-33.477,-19.263,59.425)
C2': (-34.240,-17.419,60.667)
O2': (-35.487,-17.976,61.038)
N1: (-31.978,-17.248,61.654)
O4: (-28.878,-14.814,62.194)
O2: (-32.846,-16.445,63.580)
C6: (-30.951,-17.222,60.738)
C5: (-29.887,-16.424,60.860)
O3': (-34.954,-17.636,58.342)
N3: (-30.857,-15.616,62.876)
OP1: (-31.126,-19.791,55.552)
OP2: (-29.307,-18.617,56.914)
C2: (-31.957,-16.429,62.760)
C1': (-33.136,-18.130,61.447)
C3': (-33.893,-17.816,59.249)
O5': (-31.599,-19.009,57.905)
O4': (-32.725,-19.239,60.670)
C5': (-32.647,-19.871,58.316)
P: (-30.496,-19.507,56.869)
C4': (-33.477,-19.263,59.425)
C2': (-34.240,-17.419,60.667)
O2': (-35.487,-17.976,61.038)
N1: (-31.978,-17.248,61.654)
O4: (-28.878,-14.814,62.194)
O2: (-32.846,-16.445,63.580)
C6: (-30.951,-17.222,60.738)
C5: (-29.887,-16.424,60.860)
O3': (-34.954,-17.636,58.342)
OP1: (-35.251,-16.263,56.283)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
OP2: (-34.261,-15.285,58.409)
C3': (-38.001,-13.414,58.542)
C1': (-38.000,-12.278,60.622)
C5': (-36.904,-15.455,59.617)
O4': (-37.804,-13.637,60.882)
C8: (-35.677,-11.217,60.044)
O2': (-39.938,-12.132,59.223)
C6: (-34.635,-10.123,63.248)
C5: (-35.155,-10.605,62.025)
C4: (-36.390,-11.200,62.122)
P: (-35.233,-16.178,57.763)
C4': (-37.980,-14.417,59.686)
C2': (-38.512,-12.139,59.193)
C2: (-36.564,-10.865,64.310)
N1: (-35.367,-10.271,64.381)
N3: (-37.149,-11.363,63.230)
N6: (-33.457,-9.520,63.357)
N7: (-34.703,-10.621,60.703)
N9: (-36.721,-11.579,60.855)
O5': (-36.689,-15.871,58.291)
O3': (-38.835,-13.852,57.490)
Image (generated by PyMOL):