Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YJY:D4:D5
Extra
PDB:
ATOM 1 O3' G A 3 9.557 13.097 4.631 1.00 43.06 O
ATOM 2 P C A 4 9.233 11.838 5.580 1.00 39.21 P
ATOM 3 OP1 C A 4 7.817 11.882 6.017 1.00 47.36 O
ATOM 4 OP2 C A 4 9.810 10.607 5.004 1.00 42.78 O
ATOM 5 O5' C A 4 10.160 12.131 6.840 1.00 49.64 O
ATOM 6 C5' C A 4 10.462 11.040 7.686 1.00 50.26 C
ATOM 7 C4' C A 4 11.879 11.138 8.175 1.00 56.81 C
ATOM 8 O4' C A 4 12.146 12.489 8.621 1.00 56.32 O
ATOM 9 C3' C A 4 12.200 10.255 9.364 1.00 55.73 C
ATOM 10 O3' C A 4 12.585 8.965 8.944 1.00 62.87 O
ATOM 11 C2' C A 4 13.301 11.001 10.103 1.00 52.94 C
ATOM 12 O2' C A 4 14.577 10.624 9.608 1.00 49.39 O
ATOM 13 C1' C A 4 13.022 12.463 9.727 1.00 56.35 C
ATOM 14 N1 C A 4 12.423 13.318 10.784 1.00 50.42 N
ATOM 15 C2 C A 4 13.256 14.250 11.413 1.00 44.30 C
ATOM 16 O2 C A 4 14.446 14.308 11.070 1.00 41.30 O
ATOM 17 N3 C A 4 12.732 15.049 12.374 1.00 36.67 N
ATOM 18 C4 C A 4 11.445 14.937 12.697 1.00 38.48 C
ATOM 19 N4 C A 4 10.983 15.747 13.655 1.00 39.80 N
ATOM 20 C5 C A 4 10.581 13.992 12.060 1.00 41.63 C
ATOM 21 C6 C A 4 11.103 13.207 11.112 1.00 40.90 C
ATOM 22 P A A 5 12.306 7.778 9.956 1.00 74.05 P
ATOM 23 OP1 A A 5 12.599 6.501 9.264 1.00 65.43 O
ATOM 24 OP2 A A 5 11.032 8.015 10.676 1.00 59.09 O
ATOM 25 O5' A A 5 13.414 8.080 11.061 1.00 59.62 O
TER
ATOM 1 O3' C B 4 12.585 8.965 8.944 1.00 62.87 O
ATOM 2 P A B 5 12.306 7.778 9.956 1.00 74.05 P
ATOM 3 OP1 A B 5 12.599 6.501 9.264 1.00 65.43 O
ATOM 4 OP2 A B 5 11.032 8.015 10.676 1.00 59.09 O
ATOM 5 O5' A B 5 13.414 8.080 11.061 1.00 59.62 O
ATOM 6 C5' A B 5 14.708 7.537 10.909 1.00 47.11 C
ATOM 7 C4' A B 5 15.168 7.051 12.249 1.00 48.95 C
ATOM 8 O4' A B 5 15.534 8.172 13.082 1.00 42.89 O
ATOM 9 C3' A B 5 14.108 6.314 13.049 1.00 49.63 C
ATOM 10 O3' A B 5 14.104 4.943 12.695 1.00 56.82 O
ATOM 11 C2' A B 5 14.492 6.551 14.504 1.00 49.07 C
ATOM 12 O2' A B 5 15.273 5.464 14.966 1.00 65.31 O
ATOM 13 C1' A B 5 15.412 7.770 14.424 1.00 43.95 C
ATOM 14 N9 A B 5 15.114 8.900 15.325 1.00 40.50 N
ATOM 15 C8 A B 5 13.988 9.644 15.508 1.00 39.51 C
ATOM 16 N7 A B 5 14.140 10.579 16.423 1.00 40.12 N
ATOM 17 C5 A B 5 15.452 10.437 16.861 1.00 37.88 C
ATOM 18 C6 A B 5 16.256 11.111 17.816 1.00 39.84 C
ATOM 19 N6 A B 5 15.843 12.137 18.569 1.00 34.35 N
ATOM 20 N1 A B 5 17.528 10.689 17.984 1.00 42.08 N
ATOM 21 C2 A B 5 17.973 9.668 17.251 1.00 38.33 C
ATOM 22 N3 A B 5 17.317 8.969 16.330 1.00 42.00 N
ATOM 23 C4 A B 5 16.056 9.407 16.184 1.00 40.94 C
ATOM 24 P U B 6 13.064 3.889 13.290 1.00 61.03 P
ATOM 25 OP1 U B 6 12.962 2.793 12.300 1.00 46.25 O
ATOM 26 OP2 U B 6 11.858 4.599 13.777 1.00 60.59 O
ATOM 27 O5' U B 6 13.770 3.348 14.624 1.00 58.92 O
TER
ATOM 2 P C A 4 9.233 11.838 5.580 1.00 39.21 P
ATOM 3 OP1 C A 4 7.817 11.882 6.017 1.00 47.36 O
ATOM 4 OP2 C A 4 9.810 10.607 5.004 1.00 42.78 O
ATOM 5 O5' C A 4 10.160 12.131 6.840 1.00 49.64 O
ATOM 6 C5' C A 4 10.462 11.040 7.686 1.00 50.26 C
ATOM 7 C4' C A 4 11.879 11.138 8.175 1.00 56.81 C
ATOM 8 O4' C A 4 12.146 12.489 8.621 1.00 56.32 O
ATOM 9 C3' C A 4 12.200 10.255 9.364 1.00 55.73 C
ATOM 10 O3' C A 4 12.585 8.965 8.944 1.00 62.87 O
ATOM 11 C2' C A 4 13.301 11.001 10.103 1.00 52.94 C
ATOM 12 O2' C A 4 14.577 10.624 9.608 1.00 49.39 O
ATOM 13 C1' C A 4 13.022 12.463 9.727 1.00 56.35 C
ATOM 14 N1 C A 4 12.423 13.318 10.784 1.00 50.42 N
ATOM 15 C2 C A 4 13.256 14.250 11.413 1.00 44.30 C
ATOM 16 O2 C A 4 14.446 14.308 11.070 1.00 41.30 O
ATOM 17 N3 C A 4 12.732 15.049 12.374 1.00 36.67 N
ATOM 18 C4 C A 4 11.445 14.937 12.697 1.00 38.48 C
ATOM 19 N4 C A 4 10.983 15.747 13.655 1.00 39.80 N
ATOM 20 C5 C A 4 10.581 13.992 12.060 1.00 41.63 C
ATOM 21 C6 C A 4 11.103 13.207 11.112 1.00 40.90 C
ATOM 22 P A A 5 12.306 7.778 9.956 1.00 74.05 P
ATOM 23 OP1 A A 5 12.599 6.501 9.264 1.00 65.43 O
ATOM 24 OP2 A A 5 11.032 8.015 10.676 1.00 59.09 O
ATOM 25 O5' A A 5 13.414 8.080 11.061 1.00 59.62 O
TER
ATOM 1 O3' C B 4 12.585 8.965 8.944 1.00 62.87 O
ATOM 2 P A B 5 12.306 7.778 9.956 1.00 74.05 P
ATOM 3 OP1 A B 5 12.599 6.501 9.264 1.00 65.43 O
ATOM 4 OP2 A B 5 11.032 8.015 10.676 1.00 59.09 O
ATOM 5 O5' A B 5 13.414 8.080 11.061 1.00 59.62 O
ATOM 6 C5' A B 5 14.708 7.537 10.909 1.00 47.11 C
ATOM 7 C4' A B 5 15.168 7.051 12.249 1.00 48.95 C
ATOM 8 O4' A B 5 15.534 8.172 13.082 1.00 42.89 O
ATOM 9 C3' A B 5 14.108 6.314 13.049 1.00 49.63 C
ATOM 10 O3' A B 5 14.104 4.943 12.695 1.00 56.82 O
ATOM 11 C2' A B 5 14.492 6.551 14.504 1.00 49.07 C
ATOM 12 O2' A B 5 15.273 5.464 14.966 1.00 65.31 O
ATOM 13 C1' A B 5 15.412 7.770 14.424 1.00 43.95 C
ATOM 14 N9 A B 5 15.114 8.900 15.325 1.00 40.50 N
ATOM 15 C8 A B 5 13.988 9.644 15.508 1.00 39.51 C
ATOM 16 N7 A B 5 14.140 10.579 16.423 1.00 40.12 N
ATOM 17 C5 A B 5 15.452 10.437 16.861 1.00 37.88 C
ATOM 18 C6 A B 5 16.256 11.111 17.816 1.00 39.84 C
ATOM 19 N6 A B 5 15.843 12.137 18.569 1.00 34.35 N
ATOM 20 N1 A B 5 17.528 10.689 17.984 1.00 42.08 N
ATOM 21 C2 A B 5 17.973 9.668 17.251 1.00 38.33 C
ATOM 22 N3 A B 5 17.317 8.969 16.330 1.00 42.00 N
ATOM 23 C4 A B 5 16.056 9.407 16.184 1.00 40.94 C
ATOM 24 P U B 6 13.064 3.889 13.290 1.00 61.03 P
ATOM 25 OP1 U B 6 12.962 2.793 12.300 1.00 46.25 O
ATOM 26 OP2 U B 6 11.858 4.599 13.777 1.00 60.59 O
ATOM 27 O5' U B 6 13.770 3.348 14.624 1.00 58.92 O
TER
Atoms:
C2: (13.256,14.250,11.413)
OP1: (7.817,11.882,6.017)
OP2: (9.810,10.607,5.004)
C4: (11.445,14.937,12.697)
O5': (10.160,12.131,6.840)
C3': (12.200,10.255,9.364)
C1': (13.022,12.463,9.727)
O4': (12.146,12.489,8.621)
C5': (10.462,11.040,7.686)
P: (9.233,11.838,5.580)
O2: (14.446,14.308,11.070)
C4': (11.879,11.138,8.175)
C2': (13.301,11.001,10.103)
O2': (14.577,10.624,9.608)
N1: (12.423,13.318,10.784)
N3: (12.732,15.049,12.374)
N4: (10.983,15.747,13.655)
C6: (11.103,13.207,11.112)
C5: (10.581,13.992,12.060)
O3': (12.585,8.965,8.944)
OP1: (7.817,11.882,6.017)
OP2: (9.810,10.607,5.004)
C4: (11.445,14.937,12.697)
O5': (10.160,12.131,6.840)
C3': (12.200,10.255,9.364)
C1': (13.022,12.463,9.727)
O4': (12.146,12.489,8.621)
C5': (10.462,11.040,7.686)
P: (9.233,11.838,5.580)
O2: (14.446,14.308,11.070)
C4': (11.879,11.138,8.175)
C2': (13.301,11.001,10.103)
O2': (14.577,10.624,9.608)
N1: (12.423,13.318,10.784)
N3: (12.732,15.049,12.374)
N4: (10.983,15.747,13.655)
C6: (11.103,13.207,11.112)
C5: (10.581,13.992,12.060)
O3': (12.585,8.965,8.944)
OP1: (12.599,6.501,9.264)
OP2: (11.032,8.015,10.676)
C3': (14.108,6.314,13.049)
C1': (15.412,7.770,14.424)
C5': (14.708,7.537,10.909)
O4': (15.534,8.172,13.082)
C8: (13.988,9.644,15.508)
O2': (15.273,5.464,14.966)
C6: (16.256,11.111,17.816)
C5: (15.452,10.437,16.861)
C4: (16.056,9.407,16.184)
P: (12.306,7.778,9.956)
C4': (15.168,7.051,12.249)
C2': (14.492,6.551,14.504)
C2: (17.973,9.668,17.251)
N1: (17.528,10.689,17.984)
N3: (17.317,8.969,16.330)
N6: (15.843,12.137,18.569)
N7: (14.140,10.579,16.423)
N9: (15.114,8.900,15.325)
O5': (13.414,8.080,11.061)
O3': (14.104,4.943,12.695)
OP2: (11.032,8.015,10.676)
C3': (14.108,6.314,13.049)
C1': (15.412,7.770,14.424)
C5': (14.708,7.537,10.909)
O4': (15.534,8.172,13.082)
C8: (13.988,9.644,15.508)
O2': (15.273,5.464,14.966)
C6: (16.256,11.111,17.816)
C5: (15.452,10.437,16.861)
C4: (16.056,9.407,16.184)
P: (12.306,7.778,9.956)
C4': (15.168,7.051,12.249)
C2': (14.492,6.551,14.504)
C2: (17.973,9.668,17.251)
N1: (17.528,10.689,17.984)
N3: (17.317,8.969,16.330)
N6: (15.843,12.137,18.569)
N7: (14.140,10.579,16.423)
N9: (15.114,8.900,15.325)
O5': (13.414,8.080,11.061)
O3': (14.104,4.943,12.695)
Image (generated by PyMOL):