Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YJY:C4:C5
Extra
PDB:
ATOM 1 O3' G A 3 14.757 -19.239 61.193 1.00 34.86 O
ATOM 2 P C A 4 14.852 -17.699 60.767 1.00 32.68 P
ATOM 3 OP1 C A 4 14.345 -17.585 59.388 1.00 38.90 O
ATOM 4 OP2 C A 4 16.157 -17.122 61.159 1.00 40.57 O
ATOM 5 O5' C A 4 13.843 -16.975 61.760 1.00 38.67 O
ATOM 6 C5' C A 4 13.309 -15.746 61.319 1.00 40.23 C
ATOM 7 C4' C A 4 11.870 -15.610 61.724 1.00 40.53 C
ATOM 8 O4' C A 4 11.726 -15.990 63.113 1.00 44.47 O
ATOM 9 C3' C A 4 11.353 -14.190 61.665 1.00 39.60 C
ATOM 10 O3' C A 4 10.940 -13.833 60.364 1.00 39.17 O
ATOM 11 C2' C A 4 10.245 -14.175 62.702 1.00 42.63 C
ATOM 12 O2' C A 4 9.052 -14.723 62.164 1.00 50.99 O
ATOM 13 C1' C A 4 10.818 -15.126 63.754 1.00 40.81 C
ATOM 14 N1 C A 4 11.590 -14.400 64.789 1.00 41.75 N
ATOM 15 C2 C A 4 10.938 -14.083 65.974 1.00 40.94 C
ATOM 16 O2 C A 4 9.764 -14.440 66.093 1.00 38.15 O
ATOM 17 N3 C A 4 11.603 -13.407 66.942 1.00 42.21 N
ATOM 18 C4 C A 4 12.877 -13.060 66.746 1.00 46.79 C
ATOM 19 N4 C A 4 13.496 -12.400 67.741 1.00 39.67 N
ATOM 20 C5 C A 4 13.563 -13.381 65.528 1.00 43.48 C
ATOM 21 C6 C A 4 12.890 -14.041 64.581 1.00 38.17 C
ATOM 22 P A A 5 11.737 -12.625 59.698 1.00 49.28 P
ATOM 23 OP1 A A 5 11.933 -12.991 58.275 1.00 34.85 O
ATOM 24 OP2 A A 5 12.900 -12.277 60.549 1.00 52.98 O
ATOM 25 O5' A A 5 10.757 -11.372 59.884 1.00 35.09 O
TER
ATOM 1 O3' C B 4 10.940 -13.833 60.364 1.00 39.17 O
ATOM 2 P A B 5 11.737 -12.625 59.698 1.00 49.28 P
ATOM 3 OP1 A B 5 11.933 -12.991 58.275 1.00 34.85 O
ATOM 4 OP2 A B 5 12.900 -12.277 60.549 1.00 52.98 O
ATOM 5 O5' A B 5 10.757 -11.372 59.884 1.00 35.09 O
ATOM 6 C5' A B 5 9.421 -11.533 59.442 1.00 38.64 C
ATOM 7 C4' A B 5 8.695 -10.220 59.373 1.00 42.87 C
ATOM 8 O4' A B 5 8.048 -9.940 60.632 1.00 41.78 O
ATOM 9 C3' A B 5 9.555 -9.002 59.095 1.00 48.74 C
ATOM 10 O3' A B 5 9.730 -8.840 57.701 1.00 57.53 O
ATOM 11 C2' A B 5 8.775 -7.855 59.720 1.00 52.13 C
ATOM 12 O2' A B 5 7.875 -7.310 58.762 1.00 63.14 O
ATOM 13 C1' A B 5 7.944 -8.549 60.802 1.00 41.76 C
ATOM 14 N9 A B 5 8.280 -8.221 62.200 1.00 39.09 N
ATOM 15 C8 A B 5 9.418 -8.463 62.905 1.00 32.64 C
ATOM 16 N7 A B 5 9.336 -8.064 64.149 1.00 32.76 N
ATOM 17 C5 A B 5 8.064 -7.535 64.272 1.00 34.43 C
ATOM 18 C6 A B 5 7.345 -6.941 65.336 1.00 36.19 C
ATOM 19 N6 A B 5 7.824 -6.759 66.569 1.00 35.71 N
ATOM 20 N1 A B 5 6.087 -6.532 65.090 1.00 34.41 N
ATOM 21 C2 A B 5 5.582 -6.697 63.866 1.00 34.84 C
ATOM 22 N3 A B 5 6.158 -7.237 62.795 1.00 35.44 N
ATOM 23 C4 A B 5 7.404 -7.636 63.072 1.00 35.56 C
ATOM 24 P U B 6 10.622 -7.667 57.090 1.00 86.31 P
ATOM 25 OP1 U B 6 11.787 -7.403 57.972 1.00 69.50 O
ATOM 26 OP2 U B 6 10.805 -7.986 55.655 1.00 80.50 O
ATOM 27 O5' U B 6 9.671 -6.379 57.088 1.00 67.72 O
TER
ATOM 2 P C A 4 14.852 -17.699 60.767 1.00 32.68 P
ATOM 3 OP1 C A 4 14.345 -17.585 59.388 1.00 38.90 O
ATOM 4 OP2 C A 4 16.157 -17.122 61.159 1.00 40.57 O
ATOM 5 O5' C A 4 13.843 -16.975 61.760 1.00 38.67 O
ATOM 6 C5' C A 4 13.309 -15.746 61.319 1.00 40.23 C
ATOM 7 C4' C A 4 11.870 -15.610 61.724 1.00 40.53 C
ATOM 8 O4' C A 4 11.726 -15.990 63.113 1.00 44.47 O
ATOM 9 C3' C A 4 11.353 -14.190 61.665 1.00 39.60 C
ATOM 10 O3' C A 4 10.940 -13.833 60.364 1.00 39.17 O
ATOM 11 C2' C A 4 10.245 -14.175 62.702 1.00 42.63 C
ATOM 12 O2' C A 4 9.052 -14.723 62.164 1.00 50.99 O
ATOM 13 C1' C A 4 10.818 -15.126 63.754 1.00 40.81 C
ATOM 14 N1 C A 4 11.590 -14.400 64.789 1.00 41.75 N
ATOM 15 C2 C A 4 10.938 -14.083 65.974 1.00 40.94 C
ATOM 16 O2 C A 4 9.764 -14.440 66.093 1.00 38.15 O
ATOM 17 N3 C A 4 11.603 -13.407 66.942 1.00 42.21 N
ATOM 18 C4 C A 4 12.877 -13.060 66.746 1.00 46.79 C
ATOM 19 N4 C A 4 13.496 -12.400 67.741 1.00 39.67 N
ATOM 20 C5 C A 4 13.563 -13.381 65.528 1.00 43.48 C
ATOM 21 C6 C A 4 12.890 -14.041 64.581 1.00 38.17 C
ATOM 22 P A A 5 11.737 -12.625 59.698 1.00 49.28 P
ATOM 23 OP1 A A 5 11.933 -12.991 58.275 1.00 34.85 O
ATOM 24 OP2 A A 5 12.900 -12.277 60.549 1.00 52.98 O
ATOM 25 O5' A A 5 10.757 -11.372 59.884 1.00 35.09 O
TER
ATOM 1 O3' C B 4 10.940 -13.833 60.364 1.00 39.17 O
ATOM 2 P A B 5 11.737 -12.625 59.698 1.00 49.28 P
ATOM 3 OP1 A B 5 11.933 -12.991 58.275 1.00 34.85 O
ATOM 4 OP2 A B 5 12.900 -12.277 60.549 1.00 52.98 O
ATOM 5 O5' A B 5 10.757 -11.372 59.884 1.00 35.09 O
ATOM 6 C5' A B 5 9.421 -11.533 59.442 1.00 38.64 C
ATOM 7 C4' A B 5 8.695 -10.220 59.373 1.00 42.87 C
ATOM 8 O4' A B 5 8.048 -9.940 60.632 1.00 41.78 O
ATOM 9 C3' A B 5 9.555 -9.002 59.095 1.00 48.74 C
ATOM 10 O3' A B 5 9.730 -8.840 57.701 1.00 57.53 O
ATOM 11 C2' A B 5 8.775 -7.855 59.720 1.00 52.13 C
ATOM 12 O2' A B 5 7.875 -7.310 58.762 1.00 63.14 O
ATOM 13 C1' A B 5 7.944 -8.549 60.802 1.00 41.76 C
ATOM 14 N9 A B 5 8.280 -8.221 62.200 1.00 39.09 N
ATOM 15 C8 A B 5 9.418 -8.463 62.905 1.00 32.64 C
ATOM 16 N7 A B 5 9.336 -8.064 64.149 1.00 32.76 N
ATOM 17 C5 A B 5 8.064 -7.535 64.272 1.00 34.43 C
ATOM 18 C6 A B 5 7.345 -6.941 65.336 1.00 36.19 C
ATOM 19 N6 A B 5 7.824 -6.759 66.569 1.00 35.71 N
ATOM 20 N1 A B 5 6.087 -6.532 65.090 1.00 34.41 N
ATOM 21 C2 A B 5 5.582 -6.697 63.866 1.00 34.84 C
ATOM 22 N3 A B 5 6.158 -7.237 62.795 1.00 35.44 N
ATOM 23 C4 A B 5 7.404 -7.636 63.072 1.00 35.56 C
ATOM 24 P U B 6 10.622 -7.667 57.090 1.00 86.31 P
ATOM 25 OP1 U B 6 11.787 -7.403 57.972 1.00 69.50 O
ATOM 26 OP2 U B 6 10.805 -7.986 55.655 1.00 80.50 O
ATOM 27 O5' U B 6 9.671 -6.379 57.088 1.00 67.72 O
TER
Atoms:
C2: (10.938,-14.083,65.974)
OP1: (14.345,-17.585,59.388)
OP2: (16.157,-17.122,61.159)
C4: (12.877,-13.060,66.746)
O5': (13.843,-16.975,61.760)
C3': (11.353,-14.190,61.665)
C1': (10.818,-15.126,63.754)
O4': (11.726,-15.990,63.113)
C5': (13.309,-15.746,61.319)
P: (14.852,-17.699,60.767)
O2: (9.764,-14.440,66.093)
C4': (11.870,-15.610,61.724)
C2': (10.245,-14.175,62.702)
O2': (9.052,-14.723,62.164)
N1: (11.590,-14.400,64.789)
N3: (11.603,-13.407,66.942)
N4: (13.496,-12.400,67.741)
C6: (12.890,-14.041,64.581)
C5: (13.563,-13.381,65.528)
O3': (10.940,-13.833,60.364)
OP1: (14.345,-17.585,59.388)
OP2: (16.157,-17.122,61.159)
C4: (12.877,-13.060,66.746)
O5': (13.843,-16.975,61.760)
C3': (11.353,-14.190,61.665)
C1': (10.818,-15.126,63.754)
O4': (11.726,-15.990,63.113)
C5': (13.309,-15.746,61.319)
P: (14.852,-17.699,60.767)
O2: (9.764,-14.440,66.093)
C4': (11.870,-15.610,61.724)
C2': (10.245,-14.175,62.702)
O2': (9.052,-14.723,62.164)
N1: (11.590,-14.400,64.789)
N3: (11.603,-13.407,66.942)
N4: (13.496,-12.400,67.741)
C6: (12.890,-14.041,64.581)
C5: (13.563,-13.381,65.528)
O3': (10.940,-13.833,60.364)
OP1: (11.933,-12.991,58.275)
OP2: (12.900,-12.277,60.549)
C3': (9.555,-9.002,59.095)
C1': (7.944,-8.549,60.802)
C5': (9.421,-11.533,59.442)
O4': (8.048,-9.940,60.632)
C8: (9.418,-8.463,62.905)
O2': (7.875,-7.310,58.762)
C6: (7.345,-6.941,65.336)
C5: (8.064,-7.535,64.272)
C4: (7.404,-7.636,63.072)
P: (11.737,-12.625,59.698)
C4': (8.695,-10.220,59.373)
C2': (8.775,-7.855,59.720)
C2: (5.582,-6.697,63.866)
N1: (6.087,-6.532,65.090)
N3: (6.158,-7.237,62.795)
N6: (7.824,-6.759,66.569)
N7: (9.336,-8.064,64.149)
N9: (8.280,-8.221,62.200)
O5': (10.757,-11.372,59.884)
O3': (9.730,-8.840,57.701)
OP2: (12.900,-12.277,60.549)
C3': (9.555,-9.002,59.095)
C1': (7.944,-8.549,60.802)
C5': (9.421,-11.533,59.442)
O4': (8.048,-9.940,60.632)
C8: (9.418,-8.463,62.905)
O2': (7.875,-7.310,58.762)
C6: (7.345,-6.941,65.336)
C5: (8.064,-7.535,64.272)
C4: (7.404,-7.636,63.072)
P: (11.737,-12.625,59.698)
C4': (8.695,-10.220,59.373)
C2': (8.775,-7.855,59.720)
C2: (5.582,-6.697,63.866)
N1: (6.087,-6.532,65.090)
N3: (6.158,-7.237,62.795)
N6: (7.824,-6.759,66.569)
N7: (9.336,-8.064,64.149)
N9: (8.280,-8.221,62.200)
O5': (10.757,-11.372,59.884)
O3': (9.730,-8.840,57.701)
Image (generated by PyMOL):