Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0275:0274
Extra
PDB:
ATOM 1 O3' U A 274 68.544 109.669 3.734 1.00 97.03 O
ATOM 2 P C A 275 68.048 111.076 4.324 1.00 97.20 P
ATOM 3 OP1 C A 275 68.359 111.068 5.777 1.00 96.85 O
ATOM 4 OP2 C A 275 66.652 111.310 3.871 1.00 96.49 O
ATOM 5 O5' C A 275 68.996 112.147 3.623 1.00 97.52 O
ATOM 6 C5' C A 275 70.383 112.267 3.998 1.00 99.31 C
ATOM 7 C4' C A 275 71.109 113.178 3.035 1.00101.05 C
ATOM 8 O4' C A 275 71.045 112.606 1.699 1.00101.92 O
ATOM 9 C3' C A 275 70.509 114.563 2.857 1.00101.33 C
ATOM 10 O3' C A 275 70.871 115.468 3.888 1.00102.22 O
ATOM 11 C2' C A 275 71.044 114.964 1.492 1.00100.90 C
ATOM 12 O2' C A 275 72.410 115.332 1.525 1.00100.09 O
ATOM 13 C1' C A 275 70.900 113.644 0.737 1.00101.19 C
ATOM 14 N1 C A 275 69.574 113.507 0.092 1.00101.70 N
ATOM 15 C2 C A 275 69.423 113.905 -1.247 1.00101.62 C
ATOM 16 O2 C A 275 70.408 114.351 -1.862 1.00101.98 O
ATOM 17 N3 C A 275 68.208 113.792 -1.835 1.00101.02 N
ATOM 18 C4 C A 275 67.174 113.302 -1.147 1.00100.68 C
ATOM 19 N4 C A 275 65.997 113.206 -1.771 1.00100.73 N
ATOM 20 C5 C A 275 67.299 112.888 0.209 1.00100.76 C
ATOM 21 C6 C A 275 68.503 113.006 0.784 1.00101.42 C
ATOM 22 P A A 276 69.901 116.705 4.226 1.00103.57 P
ATOM 23 OP1 A A 276 70.409 117.321 5.480 1.00103.67 O
ATOM 24 OP2 A A 276 68.487 116.237 4.156 1.00102.54 O
ATOM 25 O5' A A 276 70.143 117.726 3.024 1.00103.54 O
TER
ATOM 1 O3' A B 273 64.358 106.179 0.766 1.00107.34 O
ATOM 2 P U B 274 64.184 107.648 1.401 1.00104.78 P
ATOM 3 OP1 U B 274 63.554 107.496 2.737 1.00104.70 O
ATOM 4 OP2 U B 274 63.541 108.518 0.380 1.00103.59 O
ATOM 5 O5' U B 274 65.678 108.154 1.620 1.00102.33 O
ATOM 6 C5' U B 274 66.577 107.439 2.488 1.00 99.40 C
ATOM 7 C4' U B 274 68.001 107.855 2.220 1.00 97.40 C
ATOM 8 O4' U B 274 68.320 107.575 0.833 1.00 96.78 O
ATOM 9 C3' U B 274 68.283 109.340 2.377 1.00 96.82 C
ATOM 10 O3' U B 274 68.544 109.669 3.734 1.00 97.03 O
ATOM 11 C2' U B 274 69.497 109.538 1.479 1.00 96.49 C
ATOM 12 O2' U B 274 70.713 109.123 2.068 1.00 95.90 O
ATOM 13 C1' U B 274 69.161 108.597 0.319 1.00 96.12 C
ATOM 14 N1 U B 274 68.463 109.262 -0.796 1.00 94.69 N
ATOM 15 C2 U B 274 69.229 109.979 -1.701 1.00 93.62 C
ATOM 16 O2 U B 274 70.443 110.087 -1.605 1.00 92.36 O
ATOM 17 N3 U B 274 68.518 110.567 -2.720 1.00 93.35 N
ATOM 18 C4 U B 274 67.151 110.518 -2.921 1.00 93.13 C
ATOM 19 O4 U B 274 66.656 111.122 -3.874 1.00 93.07 O
ATOM 20 C5 U B 274 66.433 109.764 -1.946 1.00 93.07 C
ATOM 21 C6 U B 274 67.092 109.177 -0.943 1.00 94.04 C
ATOM 22 P C B 275 68.048 111.076 4.324 1.00 97.20 P
ATOM 23 OP1 C B 275 68.359 111.068 5.777 1.00 96.85 O
ATOM 24 OP2 C B 275 66.652 111.310 3.871 1.00 96.49 O
ATOM 25 O5' C B 275 68.996 112.147 3.623 1.00 97.52 O
TER
ATOM 2 P C A 275 68.048 111.076 4.324 1.00 97.20 P
ATOM 3 OP1 C A 275 68.359 111.068 5.777 1.00 96.85 O
ATOM 4 OP2 C A 275 66.652 111.310 3.871 1.00 96.49 O
ATOM 5 O5' C A 275 68.996 112.147 3.623 1.00 97.52 O
ATOM 6 C5' C A 275 70.383 112.267 3.998 1.00 99.31 C
ATOM 7 C4' C A 275 71.109 113.178 3.035 1.00101.05 C
ATOM 8 O4' C A 275 71.045 112.606 1.699 1.00101.92 O
ATOM 9 C3' C A 275 70.509 114.563 2.857 1.00101.33 C
ATOM 10 O3' C A 275 70.871 115.468 3.888 1.00102.22 O
ATOM 11 C2' C A 275 71.044 114.964 1.492 1.00100.90 C
ATOM 12 O2' C A 275 72.410 115.332 1.525 1.00100.09 O
ATOM 13 C1' C A 275 70.900 113.644 0.737 1.00101.19 C
ATOM 14 N1 C A 275 69.574 113.507 0.092 1.00101.70 N
ATOM 15 C2 C A 275 69.423 113.905 -1.247 1.00101.62 C
ATOM 16 O2 C A 275 70.408 114.351 -1.862 1.00101.98 O
ATOM 17 N3 C A 275 68.208 113.792 -1.835 1.00101.02 N
ATOM 18 C4 C A 275 67.174 113.302 -1.147 1.00100.68 C
ATOM 19 N4 C A 275 65.997 113.206 -1.771 1.00100.73 N
ATOM 20 C5 C A 275 67.299 112.888 0.209 1.00100.76 C
ATOM 21 C6 C A 275 68.503 113.006 0.784 1.00101.42 C
ATOM 22 P A A 276 69.901 116.705 4.226 1.00103.57 P
ATOM 23 OP1 A A 276 70.409 117.321 5.480 1.00103.67 O
ATOM 24 OP2 A A 276 68.487 116.237 4.156 1.00102.54 O
ATOM 25 O5' A A 276 70.143 117.726 3.024 1.00103.54 O
TER
ATOM 1 O3' A B 273 64.358 106.179 0.766 1.00107.34 O
ATOM 2 P U B 274 64.184 107.648 1.401 1.00104.78 P
ATOM 3 OP1 U B 274 63.554 107.496 2.737 1.00104.70 O
ATOM 4 OP2 U B 274 63.541 108.518 0.380 1.00103.59 O
ATOM 5 O5' U B 274 65.678 108.154 1.620 1.00102.33 O
ATOM 6 C5' U B 274 66.577 107.439 2.488 1.00 99.40 C
ATOM 7 C4' U B 274 68.001 107.855 2.220 1.00 97.40 C
ATOM 8 O4' U B 274 68.320 107.575 0.833 1.00 96.78 O
ATOM 9 C3' U B 274 68.283 109.340 2.377 1.00 96.82 C
ATOM 10 O3' U B 274 68.544 109.669 3.734 1.00 97.03 O
ATOM 11 C2' U B 274 69.497 109.538 1.479 1.00 96.49 C
ATOM 12 O2' U B 274 70.713 109.123 2.068 1.00 95.90 O
ATOM 13 C1' U B 274 69.161 108.597 0.319 1.00 96.12 C
ATOM 14 N1 U B 274 68.463 109.262 -0.796 1.00 94.69 N
ATOM 15 C2 U B 274 69.229 109.979 -1.701 1.00 93.62 C
ATOM 16 O2 U B 274 70.443 110.087 -1.605 1.00 92.36 O
ATOM 17 N3 U B 274 68.518 110.567 -2.720 1.00 93.35 N
ATOM 18 C4 U B 274 67.151 110.518 -2.921 1.00 93.13 C
ATOM 19 O4 U B 274 66.656 111.122 -3.874 1.00 93.07 O
ATOM 20 C5 U B 274 66.433 109.764 -1.946 1.00 93.07 C
ATOM 21 C6 U B 274 67.092 109.177 -0.943 1.00 94.04 C
ATOM 22 P C B 275 68.048 111.076 4.324 1.00 97.20 P
ATOM 23 OP1 C B 275 68.359 111.068 5.777 1.00 96.85 O
ATOM 24 OP2 C B 275 66.652 111.310 3.871 1.00 96.49 O
ATOM 25 O5' C B 275 68.996 112.147 3.623 1.00 97.52 O
TER
Atoms:
C2: (69.423,113.905,-1.247)
OP1: (68.359,111.068,5.777)
OP2: (66.652,111.310,3.871)
C4: (67.174,113.302,-1.147)
O5': (68.996,112.147,3.623)
C3': (70.509,114.563,2.857)
C1': (70.900,113.644,0.737)
O4': (71.045,112.606,1.699)
C5': (70.383,112.267,3.998)
P: (68.048,111.076,4.324)
O2: (70.408,114.351,-1.862)
C4': (71.109,113.178,3.035)
C2': (71.044,114.964,1.492)
O2': (72.410,115.332,1.525)
N1: (69.574,113.507,0.092)
N3: (68.208,113.792,-1.835)
N4: (65.997,113.206,-1.771)
C6: (68.503,113.006,0.784)
C5: (67.299,112.888,0.209)
O3': (70.871,115.468,3.888)
OP1: (68.359,111.068,5.777)
OP2: (66.652,111.310,3.871)
C4: (67.174,113.302,-1.147)
O5': (68.996,112.147,3.623)
C3': (70.509,114.563,2.857)
C1': (70.900,113.644,0.737)
O4': (71.045,112.606,1.699)
C5': (70.383,112.267,3.998)
P: (68.048,111.076,4.324)
O2: (70.408,114.351,-1.862)
C4': (71.109,113.178,3.035)
C2': (71.044,114.964,1.492)
O2': (72.410,115.332,1.525)
N1: (69.574,113.507,0.092)
N3: (68.208,113.792,-1.835)
N4: (65.997,113.206,-1.771)
C6: (68.503,113.006,0.784)
C5: (67.299,112.888,0.209)
O3': (70.871,115.468,3.888)
C4: (67.151,110.518,-2.921)
N3: (68.518,110.567,-2.720)
OP1: (63.554,107.496,2.737)
OP2: (63.541,108.518,0.380)
C2: (69.229,109.979,-1.701)
C1': (69.161,108.597,0.319)
C3': (68.283,109.340,2.377)
O5': (65.678,108.154,1.620)
O4': (68.320,107.575,0.833)
C5': (66.577,107.439,2.488)
P: (64.184,107.648,1.401)
C4': (68.001,107.855,2.220)
C2': (69.497,109.538,1.479)
O2': (70.713,109.123,2.068)
N1: (68.463,109.262,-0.796)
O4: (66.656,111.122,-3.874)
O2: (70.443,110.087,-1.605)
C6: (67.092,109.177,-0.943)
C5: (66.433,109.764,-1.946)
O3': (68.544,109.669,3.734)
N3: (68.518,110.567,-2.720)
OP1: (63.554,107.496,2.737)
OP2: (63.541,108.518,0.380)
C2: (69.229,109.979,-1.701)
C1': (69.161,108.597,0.319)
C3': (68.283,109.340,2.377)
O5': (65.678,108.154,1.620)
O4': (68.320,107.575,0.833)
C5': (66.577,107.439,2.488)
P: (64.184,107.648,1.401)
C4': (68.001,107.855,2.220)
C2': (69.497,109.538,1.479)
O2': (70.713,109.123,2.068)
N1: (68.463,109.262,-0.796)
O4: (66.656,111.122,-3.874)
O2: (70.443,110.087,-1.605)
C6: (67.092,109.177,-0.943)
C5: (66.433,109.764,-1.946)
O3': (68.544,109.669,3.734)
Image (generated by PyMOL):